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Gene Dmel\CG9399

General Information
Symbol	Dmel\CG9399	Species	D. melanogaster
Name		Annotation symbol	CG9399
Feature type	protein_coding_gene	FlyBase ID	FBgn0037715
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	85D25-85D25	Sequence location	3R:5,397,633..5,399,927 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9399 (FBgn0037715). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Uncharacterised protein family UPF0041. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult thoracico-abdominal ganglion, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, larval/adult midgut, larval Malpighian tubules, larval salivary gland, larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1638009_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG9399. Gene sequence location is 3R:5397633..5399927.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2011_10	Controlled Vocabulary Terms day 42 of adulthood day 41 of adulthood day 30 of adulthood day 49 of adulthood day 17 of adulthood day 45 of adulthood day 8 of adulthood day 26 of adulthood day 21 of adulthood day 13 of adulthood day 25 of adulthood day 20 of adulthood day 22 of adulthood day 39 of adulthood day 7 of adulthood day 36 of adulthood day 11 of adulthood day 37 of adulthood day 27 of adulthood day 18 of adulthood day 19 of adulthood day 28 of adulthood day 9 of adulthood day 29 of adulthood adult heart day 40 of adulthood day 16 of adulthood day 24 of adulthood day 15 of adulthood day 33 of adulthood day 43 of adulthood day 47 of adulthood day 38 of adulthood day 32 of adulthood day 48 of adulthood day 23 of adulthood day 35 of adulthood day 12 of adulthood day 10 of adulthood day 31 of adulthood day 34 of adulthood day 44 of adulthood day 14 of adulthood day 46 of adulthood
FB2012_01	Sequence features BKN46147 BKN29212
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85D25-85D25   Limits computationally determined from genome sequence between P{EP}CG9393EP3122 and P{EP}CrcEP3006
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9399 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9399-RA FBtr0082110  NM_141656   1145   154 CG9399-RB FBtr0082109  NM_169294   1008   154 CG9399-RC FBtr0302332  NM_001170100   1191   154
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9399-PA   FBpp0081588   16.6   154   10.41     NP_649913   AAF54407 CG9399-PB   FBpp0081587   16.6   154   10.41     NP_731376   AAN13434 CG9399-PC   FBpp0291537   16.6   154   10.41     NP_001163571   ACZ94868
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Uncharacterised protein family UPF0041 (IPR005336)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54407   AE014297 AAN13434   AE014297 ACZ94868   AI063628   AI402327   AI517401   AY071343 AAL48965   AY113593 AAM29598   BI240963   BI581669   BI613374   BI620379   CO279331   CO292513   CO292768   CO303620   CO311488   CO330063   CO339951   CO340007   DU708614   EC064909   EC076976   EC076977   EC198794   EC201122   EC201167   EC203024   EC216284   EC220142   EC237735   EC253299   EC257009   EV582911   EV585246   EV590254   EV590979   EV594084   EV600487   GH748342   GH753782   GH754569   GH755139   GH755648   GH756196   GH771989   GH772298   GH772454   GH782789   GH782954   GH785531   GH789947   GH790668   GH791283   GH796744   GH798925   GH799308   GH799947   GH801386   GH802470   GH802539   GH803338   GH806835   GH807132   GH808897   GH811504   GH812918   GH814605   GH819522   GH819707   GH821144   GH822822   GH826642   GH827178   GH829527   GH833135   GH836759   GH838506   GH841547   GH841971   GH843216   GH843487   GH850974   GH853303   GH853464   GH854664   GH855131   GH855190   GH856783   GH870801   GH872222   GH873915   GH874400   GH876896   GH881087   GH881111   GH882398   GH882668   GH888129   GH888917   GH892364   GH895310   GH896122   GH902186   GH907514   GH909662   GH909984   GH914092   GH914962   GH915255   GH915390   GH918465   GH919133   GH919730   GH920140   GH921149   GH921442   GH922093   GH929545   GH936692   GH937375   GH937676   GH940995
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VHB1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037715    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037715 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037715 expression level Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP    16781 adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2563) embryo 02-04hr  (2695) embryo 04-06hr  (994) embryo 06-08hr  (1044) embryo 08-10hr  (977) embryo 10-12hr  (738) embryo 12-14hr  (794) embryo 14-16hr  (850) embryo 16-18hr  (1121) embryo 18-20hr  (1971) embryo 20-22hr  (4439) embryo 22-24hr  (4023) larva L1  (3874) larva L2  (3304) larva L3 12hr old  (4584) larva L3 puffstage 1-2  (1116) larva L3 puffstage 3-6  (499) larva L3 puffstage 7-9  (291) white prepupae new  (319) white prepupae 12hr  (446) white prepupae 24hr  (291) pupae 2d postWPP  (333) pupae 3d postWPP  (269) pupae 4d postWPP  (16781) adult male 01day  (7954) adult male 05day  (5967) adult male 30day  (3698) adult female 01day  (5826) adult female 05day  (2591) adult female 30day  (2516) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2563) embryo 02-04hr  (2695) embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr  (1971) embryo 20-22hr  (4439) embryo 22-24hr  (4023) larva L1  (3874) larva L2  (3304) larva L3 12hr old  (4584) larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP  (16781) adult male 01day  (7954) adult male 05day  (5967) adult male 30day  (3698) adult female 01day  (5826) adult female 05day  (2591) adult female 30day  (2516) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP  (16781) adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP    16781 adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037715 expression level Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP    16781 adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2563) embryo 02-04hr  (2695) embryo 04-06hr  (994) embryo 06-08hr  (1044) embryo 08-10hr  (977) embryo 10-12hr  (738) embryo 12-14hr  (794) embryo 14-16hr  (850) embryo 16-18hr  (1121) embryo 18-20hr  (1971) embryo 20-22hr  (4439) embryo 22-24hr  (4023) larva L1  (3874) larva L2  (3304) larva L3 12hr old  (4584) larva L3 puffstage 1-2  (1116) larva L3 puffstage 3-6  (499) larva L3 puffstage 7-9  (291) white prepupae new  (319) white prepupae 12hr  (446) white prepupae 24hr  (291) pupae 2d postWPP  (333) pupae 3d postWPP  (269) pupae 4d postWPP  (16781) adult male 01day  (7954) adult male 05day  (5967) adult male 30day  (3698) adult female 01day  (5826) adult female 05day  (2591) adult female 30day  (2516) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2563) embryo 02-04hr  (2695) embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr  1971 embryo 20-22hr  (4439) embryo 22-24hr  (4023) larva L1  (3874) larva L2  (3304) larva L3 12hr old  (4584) larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP  (16781) adult male 01day  (7954) adult male 05day  (5967) adult male 30day  (3698) adult female 01day  (5826) adult female 05day  (2591) adult female 30day  (2516) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP  16781 adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2563 embryo 02-04hr    2695 embryo 04-06hr    994 embryo 06-08hr    1044 embryo 08-10hr    977 embryo 10-12hr    738 embryo 12-14hr    794 embryo 14-16hr    850 embryo 16-18hr    1121 embryo 18-20hr    1971 embryo 20-22hr    4439 embryo 22-24hr    4023 larva L1    3874 larva L2    3304 larva L3 12hr old    4584 larva L3 puffstage 1-2    1116 larva L3 puffstage 3-6    499 larva L3 puffstage 7-9    291 white prepupae new    319 white prepupae 12hr    446 white prepupae 24hr    291 pupae 2d postWPP    333 pupae 3d postWPP    269 pupae 4d postWPP    16781 adult male 01day    7954 adult male 05day    5967 adult male 30day    3698 adult female 01day    5826 adult female 05day    2591 adult female 30day    2516 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037715    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037715 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult thoracico-abdominal ganglion, adult crop, larval/adult hindgut, adult Malpighian tubules, adult heart, adult fat body, adult salivary gland, adult female reproductive system, adult male accessory gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, larval/adult midgut, larval Malpighian tubules, larval salivary gland, larval trachea. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037715 expression level Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop    1020 Adult Midgut    383 Adult Hindgut    1130.6 Adult Malpighian Tubules    1878.9 Adult Fat Body    2232.7 Adult Salivary Gland    1312.1 Adult Heart    1508.725 Adult VirginFemale Spermatheca    1911.5 Adult InseminatedFemale Spermatheca    1718.3 Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass    1582.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut  (672.1) Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass  (676.925) Adult Head  (783) Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion  (759.8) Adult Crop  (1020) Adult Midgut    383 Adult Hindgut  (1130.6) Adult Malpighian Tubules  (1878.9) Adult Fat Body  (2232.7) Adult Salivary Gland  (1312.1) Adult Heart  (1508.725) Adult VirginFemale Spermatheca  (1911.5) Adult InseminatedFemale Spermatheca  (1718.3) Adult Ovary  515.8 Adult Testis    82.2 Adult Male Accessory Gland  (688.7) Adult Carcass  (1582.2) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop  1020 Adult Midgut    383 Adult Hindgut  (1130.6) Adult Malpighian Tubules  (1878.9) Adult Fat Body  (2232.7) Adult Salivary Gland  (1312.1) Adult Heart  (1508.725) Adult VirginFemale Spermatheca  (1911.5) Adult InseminatedFemale Spermatheca  (1718.3) Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass  (1582.2) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop    1020 Adult Midgut    383 Adult Hindgut    1130.6 Adult Malpighian Tubules    1878.9 Adult Fat Body    2232.7 Adult Salivary Gland    1312.1 Adult Heart    1508.725 Adult VirginFemale Spermatheca    1911.5 Adult InseminatedFemale Spermatheca    1718.3 Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass    1582.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037715 expression level Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop    1020 Adult Midgut    383 Adult Hindgut    1130.6 Adult Malpighian Tubules    1878.9 Adult Fat Body    2232.7 Adult Salivary Gland    1312.1 Adult Heart    1508.725 Adult VirginFemale Spermatheca    1911.5 Adult InseminatedFemale Spermatheca    1718.3 Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass    1582.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut  672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass  676.925 Adult Head  783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion  759.8 Adult Crop  (1020) Adult Midgut    383 Adult Hindgut  (1130.6) Adult Malpighian Tubules  (1878.9) Adult Fat Body  (2232.7) Adult Salivary Gland  (1312.1) Adult Heart  (1508.725) Adult VirginFemale Spermatheca  (1911.5) Adult InseminatedFemale Spermatheca  (1718.3) Adult Ovary  515.8 Adult Testis    82.2 Adult Male Accessory Gland  688.7 Adult Carcass  (1582.2) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop  1020 Adult Midgut    383 Adult Hindgut  1130.6 Adult Malpighian Tubules  (1878.9) Adult Fat Body  (2232.7) Adult Salivary Gland  1312.1 Adult Heart  1508.725 Adult VirginFemale Spermatheca  (1911.5) Adult InseminatedFemale Spermatheca  1718.3 Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass  1582.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    137.925 Larval Midgut    324.6 Larval Hindgut    672.1 Larval Malpighian Tubules    424.6 Larval Fat Body    52.3 Larval Salivary Gland    122.4 Larval Trachea    317.975 Larval Carcass    676.925 Adult Head    783 Adult Eye    438.85 Adult Brain    451.6 Adult Thoracic-Abdominal Ganglion    759.8 Adult Crop    1020 Adult Midgut    383 Adult Hindgut    1130.6 Adult Malpighian Tubules    1878.9 Adult Fat Body    2232.7 Adult Salivary Gland    1312.1 Adult Heart    1508.725 Adult VirginFemale Spermatheca    1911.5 Adult InseminatedFemale Spermatheca    1718.3 Adult Ovary    515.8 Adult Testis    82.2 Adult Male Accessory Gland    688.7 Adult Carcass    1582.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    783   NA  Eye    438.85   NA  Brain    451.6   137.925  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    759.8   NA  Crop    1020   324.6  Midgut    383   672.1  Hindgut    1130.6   424.6  Malpighian Tubules    1878.9   52.3  Fat Body    2232.7   122.4  Salivary Gland    1312.1   NA  Heart    1508.725   317.975  Trachea    NA   NA  VirginFemale Spermatheca    1911.5   NA  InseminatedFemale Spermatheca    1718.3   NA  Ovary    515.8   NA  Testis    82.2   NA  Male Accessory Gland    688.7   676.925  Carcass    1582.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_15
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037715 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9399-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG9399LA00183 viable, with Scer\GAL4pnr-MD237 CG9399GD4636 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG9399 Class Mutagen Stocks Known lesion CG9399LA00183 P-element activity 2 -- CG9399A137 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9399 Class Mutagen Stocks Known lesion CG9399GD4636 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9399KK109212 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6153 (Ryder, 2004.4.26) Df(3R)Exel6264 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4636} NA P{KK109212} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{GSV1}C436C436 NA P{Mae-UAS.6.11}CG9399LA00183 NA miscellaneous insertions PBac{5HPw+}CG9399A137 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9399 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66316 DroID - A comprehensive database of gene and protein interactions. • FBgn0037715 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41157
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16532 Dere\GG17356 Dgri\GH19299 Dmoj\GI23515 Dper\GL21494 Dpse\GA26297 Dsec\GM26242 Dsim\GD20782 Dvir\GJ10267 Dwil\GK11250 Dyak\GE24761
Curated drosophilid orthologs
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL009278-PA Aedes aegypti (mosquito) AGAP004906-PA Anopheles gambiae (mosquito) XP_396637.2 Apis mellifera (honey bee) XP_001943803.1 Acyrthosiphon pisum (pea aphid) At4g22310.1 Arabidopsis thaliana (wall cress) 87608 Batrachochytrium dendrobatidis (chytrid fungus) 131136 Branchiostoma floridae (lancelet) 57910 Branchiostoma floridae (lancelet) BGIBMGA010102-PA Bombyx mori (silk worm) CAL0002190 Candida albicans (a form of yeast) CBP02929 Caenorhabditis briggsae (nematode) CE28447 Caenorhabditis elegans (worm) ENSCAFP00000022620 Canis familiaris (dog) ENSCINP00000020117 Ciona intestinalis (sea squirt) JA04582 Caenorhabditis japonica (nematode) CMB099C Cyanidioschyzon merolae (red alga) cn01084 Cryptococcus neoformans (yeast-like fungus) CPIJ013355 Culex pipens (mosquito) ENSCPOP00000003485 Cavia porcellus (guinea pig) 111398 Chlamidomonas reinhardtii (green alga) RP00742 Caenorhabditis remanei (nematode) ENSCSAVP00000013897 Ciona savignyi (sedentary tunicate) 174885 Capitella spl (polychaete worm) 231612 Daphnia pulex (daphnia) ENSDARP00000031014 Danio rerio (zebra fish) ENSECAP00000000030 Equus caballus (horse) ENSGACP00000004283 Gymnopilus aculeatus (mushroom) ENSGALP00000024854 Gallus gallus (chicken) ENSP00000271373 Homo sapiens (human) ISCW019127-PA Ixodes scapularis (deer tick) 229316 Lottia gigantea (owl limpet) ENSMODP00000003391 Monodelphis domestica (gray opossum) ENSMMUP00000013616 Macaca mulatta (rhesus monkey) ENSMUSP00000027853 Mus musculus (house mouse) 128198 Nematostella vectensis (starlet anemone) XP_001604232.1 Nasonia vitripennis (wasp) ENSOANP00000006151 Ornithorynchus anatinus (platypus) ENSORLP00000015989 Oryzias latipes (japanese killifish) LOC_Os07g26700.1 Oryza sativa (asian rice) 8422 Ostreococcus tauri (green alga) PHUM004078-PA Pediculus humanus (human body louse) PP01624 Pristionchus pacificus (nematode) 165416 Physcomitrella patens (moss) ENSPPYP00000000639 Pongo pygmaeus (orangutan) 71227 Phytophthora ramorum (sudden oak death pathogen) 72343 Phytophthora ramorum (sudden oak death pathogen) 72443 Phytophthora ramorum (sudden oak death pathogen) 138818 Phytophthora sojae (root rot pathogen) 568180 Populus trichocarpa (black cottonwood) ENSPTRP00000002735 Pan troglodytes (chimpanzee) ENSRNOP00000004206 Rattus norvegicus (norway rat) 4749368 Sorghum bicolor (sorghum) Smp_099420 Schistosoma mansoni (trematode parasite) SPAC24B11.09 Schizosaccharomyces pombe (fission yeast) XP_001184122.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001204034.1 Strongylocentrotus purpuratus (purple sea urchin) 31849 Trichoplax adhaerens (metazoa) XP_970161.2 Tribolium castaneum (red flour beetle) TP03_0735 Theileria parva (parasitic protozoan) ENSTRUP00000030865 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000054617 Xenopus tropicalis (frog) YALI0C03223g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16385 LH17309 ISCW019127 FBgn0241865 FBgn0241864 FBgn0213262 FBgn0213261 FBgn0197553 FBgn0192246 FBgn0192247 FBgn0181098 FBgn0181097 JGI_V11_231612 FBgn0247671 FBgn0247672 FBgn0159087 FBgn0159088 FBgn0146241 FBgn0037714 FBgn0126765 FBgn0109585 FBgn0109583 FBgn0093554 FBgn0093553 CPIJ005268 CPIJ013355 BGIBMGA010102 ACYPI005090 GB19433 AGAP004906 AAEL009278 PB25953 PHUM335300 GLEAN_04964
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	22220 y1 w*; P{Mae-UAS.6.11}CG9399LA00183 16048 y1 w1118; PBac{5HPw+}CG9399A137
Kyoto	120183 y* w*; P{Mae-UAS.6.11}CG9399LA00183
VDRC	v101455 P{KK109212}VIE-260B v13788 w1118; P{GD4636}v13788 v13789 w1118; P{GD4636}v13789
Genomic Clones ( 1 )
	BACR19N07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 105 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE37932 RH42520
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH03552 GH21387 GH28330 RH19204 RH51521
Other clones	Dmel_dig_002410_0631_0410 Dmel_dig_010947_0710_1459 Dmel_neb_009055_0859_0591 Dmel_neb_011903_0328_3545 Dmel_neb_013212_0694_3317 Dmel_neb_014216_0405_0869 EK134058 EK200343 EK200925 EK224711 EK242238 EK294451 EP09723 EP09853 RP003020643 RP003027850 RP003034489 RP003038456 RP003040186 RP003043004 RP003048854 RP003050532 RP003066874 RP003068864 RP003076514 RP003077170 RP003084246 RP003085096 RP003104622 RP003120099 RP003124540 RP003157419 RP003158375 RP003164775 RP003173613 RP003203477 RP003210372 RP003218740 RP003220254 RP003221720 RP003223410 RP003227669 RP003228751 RP003231250 RP003235693 RP003244585 RP003261228 RP003271980 RP003275674 RP003285929 RP003294021 RP003298244 RP003303300 RP003309578 RP003309788 RP003311255 RP003312680 RP003314377 RP003316239 RP003321791 RP003335890 RP003341408 RP003342706 RP003348607 RP003398725 RP003402054 RP003420432 RP003423215 RP003439290 RP003451296 RP003457111 RP003474702 RP003483031 RP003487080 RP003488527 RP003489941 RP003541498 RP003547660 RP003550379 RP003552325 RP003558635 RP003558824 RP003563211 RP003573537 RP003580181 RP003601008 RP003618081 RP003619368 RP003627158 RP003648141 RP003648491 RP003651885 RP003661005 RP003668679 RP003669993 RP003671523 RP003673385 RP003675318
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037715 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41157
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141656 NM_169294 NM_001170100 RefSeq (Proteins) • NP_649913 NP_731376 NP_001163571 DDBJ / EMBL / GenBank • AAF54407 AAL48965 AAM29598 AAN13434 ACZ94868 AY071343 AY113593 BI240963 BI613374 DU708614 Entrez Gene - A searchable database of RefSeq genes. • 41157 UniProtKB/TrEMBL • Q9VHB1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Uncharacterised protein family UPF0041 (IPR005336)
Linkouts
	BioGRID - A database of protein and genetic interactions • 66316 DroID - A comprehensive database of gene and protein interactions. • FBgn0037715 DRSC - Results from RNAi screens. • FBgn0037715 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037715 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9399-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037715 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41157 InParanoid A subset of ortholog calls from InParanoid. • AAEL009278-PA Aedes aegypti (mosquito) AGAP004906-PA Anopheles gambiae (mosquito) XP_396637.2 Apis mellifera (honey bee) XP_001943803.1 Acyrthosiphon pisum (pea aphid) At4g22310.1 Arabidopsis thaliana (wall cress) 87608 Batrachochytrium dendrobatidis (chytrid fungus) 131136 Branchiostoma floridae (lancelet) 57910 Branchiostoma floridae (lancelet) BGIBMGA010102-PA Bombyx mori (silk worm) CAL0002190 Candida albicans (a form of yeast) CBP02929 Caenorhabditis briggsae (nematode) CE28447 Caenorhabditis elegans (worm) ENSCAFP00000022620 Canis familiaris (dog) ENSCINP00000020117 Ciona intestinalis (sea squirt) JA04582 Caenorhabditis japonica (nematode) CMB099C Cyanidioschyzon merolae (red alga) cn01084 Cryptococcus neoformans (yeast-like fungus) CPIJ013355 Culex pipens (mosquito) ENSCPOP00000003485 Cavia porcellus (guinea pig) 111398 Chlamidomonas reinhardtii (green alga) RP00742 Caenorhabditis remanei (nematode) ENSCSAVP00000013897 Ciona savignyi (sedentary tunicate) 174885 Capitella spl (polychaete worm) 231612 Daphnia pulex (daphnia) ENSDARP00000031014 Danio rerio (zebra fish) ENSECAP00000000030 Equus caballus (horse) ENSGACP00000004283 Gymnopilus aculeatus (mushroom) ENSGALP00000024854 Gallus gallus (chicken) ENSP00000271373 Homo sapiens (human) ISCW019127-PA Ixodes scapularis (deer tick) 229316 Lottia gigantea (owl limpet) ENSMODP00000003391 Monodelphis domestica (gray opossum) ENSMMUP00000013616 Macaca mulatta (rhesus monkey) ENSMUSP00000027853 Mus musculus (house mouse) 128198 Nematostella vectensis (starlet anemone) XP_001604232.1 Nasonia vitripennis (wasp) ENSOANP00000006151 Ornithorynchus anatinus (platypus) ENSORLP00000015989 Oryzias latipes (japanese killifish) LOC_Os07g26700.1 Oryza sativa (asian rice) 8422 Ostreococcus tauri (green alga) PHUM004078-PA Pediculus humanus (human body louse) PP01624 Pristionchus pacificus (nematode) 165416 Physcomitrella patens (moss) ENSPPYP00000000639 Pongo pygmaeus (orangutan) 71227 Phytophthora ramorum (sudden oak death pathogen) 72343 Phytophthora ramorum (sudden oak death pathogen) 72443 Phytophthora ramorum (sudden oak death pathogen) 138818 Phytophthora sojae (root rot pathogen) 568180 Populus trichocarpa (black cottonwood) ENSPTRP00000002735 Pan troglodytes (chimpanzee) ENSRNOP00000004206 Rattus norvegicus (norway rat) 4749368 Sorghum bicolor (sorghum) Smp_099420 Schistosoma mansoni (trematode parasite) SPAC24B11.09 Schizosaccharomyces pombe (fission yeast) XP_001184122.1 Strongylocentrotus purpuratus (purple sea urchin) XP_001204034.1 Strongylocentrotus purpuratus (purple sea urchin) 31849 Trichoplax adhaerens (metazoa) XP_970161.2 Tribolium castaneum (red flour beetle) TP03_0735 Theileria parva (parasitic protozoan) ENSTRUP00000030865 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000054617 Xenopus tropicalis (frog) YALI0C03223g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41157 modMine - Data generated by the modENCODE project. • FBgn0037715 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16385 LH17309 ISCW019127 FBgn0241865 FBgn0241864 FBgn0213262 FBgn0213261 FBgn0197553 FBgn0192246 FBgn0192247 FBgn0181098 FBgn0181097 JGI_V11_231612 FBgn0247671 FBgn0247672 FBgn0159087 FBgn0159088 FBgn0146241 FBgn0037714 FBgn0126765 FBgn0109585 FBgn0109583 FBgn0093554 FBgn0093553 CPIJ005268 CPIJ013355 BGIBMGA010102 ACYPI005090 GB19433 AGAP004906 AAEL009278 PB25953 PHUM335300 GLEAN_04964
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG9399 (Molnar et al., 2006, Keleman et al., 2009.8.5, Pospisilik et al., 2010, Cammarato et al., 2011)
Name Synonym
Secondary FlyBase IDs
References ( 16 )
Research paper	Pospisilik et al., 2010, Cell 140(1): 148--160 Drosophila genome-wide obesity screen reveals hedgehog as a determinant of brown versus white adipose cell fate. [FBrf0212676] Molnar et al., 2006, Genetics 174(3): 1635--1659 A gain-of-function screen identifying genes required for vein formation in the Drosophila melanogaster wing. [FBrf0195387]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission. BDGP TI submission. [FBrf0188739] Merriam, 2005.11.18, Merriam insertions. Merriam insertions. [FBrf0195913] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]