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Gene Dmel\FBX011

General Information
Symbol	Dmel\FBX011	Species	D. melanogaster
Name	FBX011 ortholog	Annotation symbol	CG9461
Feature type	protein_coding_gene	FlyBase ID	FBgn0037760
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	85E9-85E10	Sequence location	3R:5,629,208..5,635,090 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene FBX011 ortholog is referred to in FlyBase by the symbol Dmel\FBX011 (CG9461, FBgn0037760). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: ubiquitin-protein ligase activity; zinc ion binding. There is experimental evidence that it is involved in the biological process: regulation of gene silencing by RNA; siRNA loading onto RISC involved in chromatin silencing by small RNA. 8 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Carbohydrate-binding/sugar hydrolysis domain; F-box domain, cyclin-like; Parallel beta-helix repeat; Parallel beta-helix repeat-2; Pectin lyase fold; Pectin lyase fold/virulence factor; Periplasmic copper-binding protein NosD, beta helix domain; Zinc finger, N-recognin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult brain, larval trachea, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1637743_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of FBX011. Gene sequence location is 3R:5629208..5635090.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 85E9-85E10   Limits computationally determined from genome sequence between P{EP}CrcEP3006 and P{lacW}s2681
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\FBX011 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Tissue-specific extension of 3' UTRs observed during later stages (FBrf0218523, FBrf0219848); all variants may not be annotated
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) FBX011-RA FBtr0082155  NM_141697   4355   1182 FBX011-RB FBtr0334684  NM_001275512   5638   1182
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein FBX011-PA   FBpp0081633   124.6   1182   6.66     NP_649954   AAF54459 FBX011-PB   FBpp0306742   124.6   1182   6.66     NP_001262441   AGB95823
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Periplasmic copper-binding protein NosD, beta helix domain (IPR007742) F-box domain, cyclin-like (IPR001810) Zinc finger, N-recognin (IPR003126) Parallel beta-helix repeat (IPR006626) Carbohydrate-binding/sugar hydrolysis domain (IPR006633) Pectin lyase fold/virulence factor (IPR011050) Parallel beta-helix repeat-2 (IPR022441) Pectin lyase fold (IPR012334)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA567218   AA695775   AE014297 AAF54459   AE014297 AGB95823   AI294504   AI543272   AW941135   BF506578   BG633637   BI162982   BI163368   BI243969   BI366781   BI633040   BP540875   BT010305 AAQ23623   CA806458   CK660615   CL528165   CO185338   CO185753   CO275617   CO282750   CO292195   CO296941   CO297668   CO297696   CO297724   CO305407   CO308593   CO309678   CO315036   CO330886   CO330889   EC053011   EC053385   EC053495   EC053843   EC055064   EC055481   EC055504   EC055531   EC055982   EC062391   EC071310   EC074945   EC075077   EC076909   EC080507   EC081365   EC081818   EC082848   EC085266   EC200158   EC204983   EC204984   EC205802   EC210978   EC211476   EC213163   EC228768   EC253230   GH750023   GH752316   GH752466   GH752586   GH753379   GH756651   GH756990   GH757236   GH759626   GH770139   GH770999   GH771054   GH771782   GH776139   GH776401   GH783002   GH786388   GH788008   GH788917   GH789523   GH796672   GH797576   GH801742   GH801751   GH803837   GH809654   GH809667   GH820728   GH822395   GH823130   GH823305   GH824038   GH829260   GH831221   GH835648   GH836903   GH837673   GH843602   GH847112   GH847946   GH864440   GH867176   GH868381   GH868688   GH869901   GH871153   GH872505   GH872777   GH873457   GH875193   GH876541   GH883849   GH885044   GH888118   GH889442   GH894982   GH897677   GH897829   GH904881   GH904918   GH905558   GH907797   GH912720   GH912967   GH913167   GH914628   GH916662   GH917892   GH918520   GH918989   GH919141   GH923772   GH926174   GH930354   GH931830   GH934332   GH934447
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VH60 Q6NQY0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
cytoplasm inferred from direct assay (Lee et al., 2009) perinuclear region of cytoplasm inferred from direct assay (Lee et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult brain, larval trachea, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    88.975 Larval Midgut    40.7 Larval Hindgut    68.7 Larval Malpighian Tubules    81.7 Larval Fat Body    54.4 Larval Salivary Gland    59.2 Larval Trachea    109.725 Larval Carcass    52.05 Adult Head    35 Adult Eye    67.025 Adult Brain    104.1 Adult Thoracic-Abdominal Ganglion    82.5 Adult Crop    59 Adult Midgut    39.1 Adult Hindgut    62.9 Adult Malpighian Tubules    41.7 Adult Fat Body    44.8 Adult Salivary Gland    43.4 Adult Heart    70.825 Adult VirginFemale Spermatheca    52.3 Adult InseminatedFemale Spermatheca    54.9 Adult Ovary    165.5 Adult Testis    84.7 Adult Male Accessory Gland    40.3 Adult Carcass    35.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    no informative data   NA  Eye    67.025   NA  Brain    104.1   88.975  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    82.5   NA  Crop    59   no informative data  Midgut    no informative data   68.7  Hindgut    62.9   81.7  Malpighian Tubules    no informative data   no informative data  Fat Body    no informative data   no informative data  Salivary Gland    no informative data   NA  Heart    70.825   109.725  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    165.5   NA  Testis    84.7   NA  Male Accessory Gland    no informative data   no informative data  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (49) central nervous system, larvae L3  (60) central nervous system, pupae P8  (40) head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering  (37) carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female  (78) ovary, mated 4-day female  (80) testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (49) central nervous system, larvae L3  (60) central nervous system, pupae P8  (40) head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering  (37) carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female  (78) ovary, mated 4-day female  (80) testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    49 central nervous system, larvae L3    60 central nervous system, pupae P8    40 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    13 head, mated 1-day female    14 head, mated 4-day female    12 head, mated 20-day female    11 head, mated 1-day male    21 head, mated 4-day male    21 head, mated 20-day male    22 salivary gland, larvae L3 wandering    4 salivary gland, white prepupae    20 digestive system, larvae L3 wandering    19 digestive system, 1-day adult    9 digestive system, 4-day adult    13 digestive system, 20-day adult    12 fat body, larvae L3 wandering    5 fat body, white prepupae    20 fat body, pupae P8    18 carcass, larvae L3 wandering    37 carcass, 1-day adult    12 carcass, 4-day adult    12 carcass, 20-day adult    10 ovary, virgin 4-day female    78 ovary, mated 4-day female    80 testis, mated 4-day male    17 accessory gland, mated 4-day male    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr  (30) embryo 08-10hr  (32) embryo 10-12hr  (29) embryo 12-14hr  (27) embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new  (30) white prepupae 12hr  (30) white prepupae 24hr  (29) pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day  (35) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (42) embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr  30 embryo 08-10hr  32 embryo 10-12hr  29 embryo 12-14hr  27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new  30 white prepupae 12hr  30 white prepupae 24hr  29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day  (35) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    42 embryo 02-04hr    9 embryo 04-06hr    18 embryo 06-08hr    30 embryo 08-10hr    32 embryo 10-12hr    29 embryo 12-14hr    27 embryo 14-16hr    23 embryo 16-18hr    20 embryo 18-20hr    17 embryo 20-22hr    10 embryo 22-24hr    11 larva L1    10 larva L2    7 larva L3 12hr old    6 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    18 larva L3 puffstage 7-9    25 white prepupae new    30 white prepupae 12hr    30 white prepupae 24hr    29 pupae 2d postWPP    19 pupae 3d postWPP    10 pupae 4d postWPP    8 adult male 01day    10 adult male 05day    11 adult male 30day    11 adult female 01day    22 adult female 05day    35 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (36) Schneider line 2 Sg4    20 embryonic 1182-4H  (32) embryonic GM2  (40) embryonic Kc167    22 embryonic S1  (27) embryonic S3  26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8  (30) wing disc ML-DmD9  (31) wing disc ML-DmD16-c3  (28) wing disc ML-DmD21    17 wing disc ML-DmD32  (33) haltere disc ML-DmD17-c3  (33) eye-antennal disc ML-DmD11  26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1  (28) CNS ML-DmBG1-c1  (27) CNS ML-DmBG2-c2    17 tumorous blood cells mbn2  26 ovary fGS/OSS  (32) ovary OSC  26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (36) Schneider line 2 Sg4    20 embryonic 1182-4H  32 embryonic GM2  (40) embryonic Kc167    22 embryonic S1  27 embryonic S3  26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8  30 wing disc ML-DmD9  31 wing disc ML-DmD16-c3  28 wing disc ML-DmD21    17 wing disc ML-DmD32  (33) haltere disc ML-DmD17-c3  (33) eye-antennal disc ML-DmD11  26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1  28 CNS ML-DmBG1-c1  27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2  26 ovary fGS/OSS  32 ovary OSC  26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    36 Schneider line 2 Sg4    20 embryonic 1182-4H    32 embryonic GM2    40 embryonic Kc167    22 embryonic S1    27 embryonic S3    26 leg disc CME L1    23 wing disc CME-W2    19 wing disc ML-DmD8    30 wing disc ML-DmD9    31 wing disc ML-DmD16-c3    28 wing disc ML-DmD21    17 wing disc ML-DmD32    33 haltere disc ML-DmD17-c3    33 eye-antennal disc ML-DmD11    26 antennal disc ML-DmD20-c5    17 mixed discs ML-DmD4-c1    28 CNS ML-DmBG1-c1    27 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    26 ovary fGS/OSS    32 ovary OSC    26 ovary OSS    17 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (27) cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult  (60) Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult  (51) Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (58) Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (56) Caffeine 25 mg/ml 48 hrs, 4-day adult  (29) Paraquat 5 mM 48 hrs, 4-day adult  (46) Paraquat 10 mM 48 hrs, 4-day adult  (40) Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult  (60) Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult  (51) Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3  (58) Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (56) Caffeine 25 mg/ml 48 hrs, 4-day adult  29 Paraquat 5 mM 48 hrs, 4-day adult  (46) Paraquat 10 mM 48 hrs, 4-day adult  (40) Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    27 cold shock, 4-day adult    19 heat shock, 4-day adult    25 Cadmium 50 mM 6 hrs, larvae L3    8 Cadmium 50 mM 12 hrs, larvae L3    8 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    60 Copper 0.5 mM 12 hrs, larvae L3    9 Copper 15 mM 48 hrs, 4-day adult    51 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    21 Ethanol 2.5% 3 hrs, larvae L3    58 Ethanol 5% 3 hrs, larvae L3    7 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    56 Caffeine 25 mg/ml 48 hrs, 4-day adult    29 Paraquat 5 mM 48 hrs, 4-day adult    46 Paraquat 10 mM 48 hrs, 4-day adult    40 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • GM01353 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037760 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9461-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for FBX011 Stages(s) 1-3 Stages(s) 4-6
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable FBX011EY09314 viable, with Scer\GAL4pnr-MD237 FBX011GD14222 Sterility Allele fertile FBX011EY09314 Phenotype manifest in Allele
Classical Alleles ( 5 )
For All Classical Alleles Show
Allele of FBX011 Class Mutagen Stocks Known lesion FBX011EY09314 P-element activity 1 -- FBX011MB07449 1 -- FBX011NP2786 1 -- FBX011Q803R ethyl methanesulfonate 0 Yes FBX011Δ37 0 Yes
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of FBX011 Class Mutagen Stocks Known lesion FBX011GD14222 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes FBX011JF01324 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes FBX011KK100670 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6154 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{KK100670} NA P{TRiP.JF01324} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}FBX011EY09314 NA insertion of enhancer trap binary system Mi{ET1}FBX011MB07449 No P{GawB}FBX011NP2786 No
Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )
Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
regulation of gene silencing by RNA inferred from mutant phenotype (Lee et al., 2009) siRNA loading onto RISC involved in chromatin silencing by small RNA inferred from mutant phenotype (Lee et al., 2009)
Cellular Component
CV term Evidence References
cytoplasm inferred from direct assay (Lee et al., 2009) perinuclear region of cytoplasm inferred from direct assay (Lee et al., 2009)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
ubiquitin-protein ligase activity inferred from electronic annotation with InterPro:IPR003126 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR003126 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
FBX011 - CG3708 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions FBX011 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66366 DroID - A comprehensive database of gene and protein interactions. • FBgn0037760 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41209
Orthologs
OrthoDB Orthologs (40) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG615GZX Dipteran inclusive ortholog search EOG6TQMJ4 Insect inclusive ortholog search EOG6RJDWG Arthropod inclusive ortholog search EOG6X69Q7 Metazoa inclusive ortholog search EOG6V4G1F
Orthologs in Drosophila Species (EOG615GZX)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\FBX011     Drosophila simulans   Dsim\GD20755 Y   Drosophila sechellia   Dsec\GM26208 Y   Drosophila erecta   Dere\GG17321 Y   Drosophila yakuba   Dyak\GE24725 Y   Drosophila ananassae   Dana\GF17149 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21805 Y   Drosophila persimilis   Dper\GL23224 Y   Drosophila willistoni   Dwil\GK14511 Y   Drosophila virilis   Dvir\GJ24169 Y   Drosophila mojavensis   Dmoj\GI15642     Drosophila mojavensis   Dmoj\GI23313 Y   Drosophila grimshawi   Dgri\GH18333 Y
Orthologs in non-Drosophila Dipterans (EOG6TQMJ4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004875   Anopheles gambiae Malaria mosquito  Agam\AGAP001731   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002693
Orthologs in non-Dipteran Insects (EOG6RJDWG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC412059   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG002976   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11272   Atta cephalotes Leafcutter ant  Acep\ACEP19283   Camponotus floridanus Florida carpenter ant  Cflo\CFLO19619   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15703   Linepithema humile Argentine ant  Lhum\LH16330   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17578   Solenopsis invicta Red fire ant  Sinv\SINV11036   Acyrthosiphon pisum Pea aphid  Apim\ACYPI006197   Bombyx mori Silkmoth  Bmor\BGIBMGA005003   Pediculus humanus Human body louse  Phum\PHUM334440   Tribolium castaneum Red flour beetle  Tcas\TC010102
Orthologs in non-Insect Arthropods (EOG6X69Q7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\SLC4A1   Ixodes scapularis Deer tick  Isca\ISCW003305
Orthologs in non-Arthropod Metazoa (EOG6V4G1F)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\dre-1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003480gn   Danio rerio Zebrafish  Drer\ENSDARG00000061631   Danio rerio Zebrafish  Drer\fbxo11   Xenopus tropicalis Western clawed frog  Xtro\fbxo11   Gallus gallus Domestic chicken  Ggal\FBXO11   Mus musculus House mouse  Mmus\Fbxo11   Rattus norvegicus Norway rat  Rnor\Fbxo11   Homo sapiens Human  Hsap\FBXO11
Human Orthologs (1)
Gene OMIM HGNC Hsap\FBXO11
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD20755 Drosophila sechellia Dsec\GM26208 Drosophila erecta Dere\GG17321 Drosophila yakuba Dyak\GE24725 Drosophila ananassae Dana\GF17149 Drosophila pseudoobscura pseudoobscura Dpse\GA21805 Drosophila persimilis Dper\GL23224 Drosophila willistoni Dwil\GK14511 Drosophila virilis Dvir\GJ24169 Drosophila mojavensis Dmoj\GI23313 Drosophila grimshawi Dgri\GH18333
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	25641 w1118; Mi{ET1}FBX011MB07449 31484 y1 v1; P{TRiP.JF01324}attP2 16932 y1 w67c23; P{EPgy2}FBX011EY09314
Kyoto	104324 w*; P{GawB}FBX011NP2786 / TM3, Sb1 Ser1
VDRC	v24039 w1118; P{GD14222}v24039 v24041 w1118; P{GD14222}v24041
Genomic Clones ( 1 )
	BACR23O04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 133 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM01353
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT09103 LP07892 LP19340 RE02268 RE02749 RE41793 RE52387 SD09979 SD27006
Other clones	45608 51529 53060 56826 56932 69989 71662 81959 119231 192899 192901 214311.36 CK01.1D.C10 CK01.2B.D8 CK01.34D.G11 CK01.80B.E8 CK01.97C.F1 CK01.128D.A4 CK01.141D.E8 EC053011 EC053385 EC053495 EC053843 EC055064 EC055481 EC055504 EC055531 EC055982 EK008241 EK011606 EK118052 EK161136 EK170317 EK170347 EK170419 EK199427 EK215455 EK218904 EK238833 EK248502 EK258806 EK296355 EK296359 ESG013c.E21_A08 FGA008F07 GM04451 RP003028353 RP003030152 RP003058428 RP003068143 RP003079757 RP003085316 RP003089665 RP003091404 RP003104735 RP003121724 RP003128235 RP003136969 RP003143074 RP003154069 RP003170340 RP003176078 RP003180457 RP003186304 RP003196080 RP003197248 RP003206075 RP003211938 RP003223430 RP003227787 RP003232151 RP003247074 RP003251577 RP003254574 RP003256539 RP003257912 RP003258978 RP003259078 RP003262511 RP003265279 RP003268248 RP003271976 RP003275635 RP003277053 RP003278525 RP003282239 RP003285069 RP003289996 RP003290615 RP003299679 RP003335176 RP003335689 RP003341154 RP003342448 RP003345374 RP003345653 RP003371785 RP003395065 RP003424048 RP003445356 RP003450279 RP003454182 RP003461709 RP003467326 RP003472980 RP003474183 RP003476415 RP003488314 RP003517550 RP003523382 RP003539765 RP003548505 RP003571610 RP003577397 RP003585064 RP003594165 RP003615126 RP003631885 RP003641223 RP003649410 RP003649629 RP003658769 RP003666728
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037760 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41209
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: FBX011 CG9461 (Lee et al., 2009)
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141697 NM_001275512 RefSeq (Proteins) • NP_649954 NP_001262441 DDBJ / EMBL / GenBank • AA567218 AAF54459 AAQ23623 AGB95823 AW941135 BT010305 CL528165 Entrez Gene - A searchable database of RefSeq genes. • 41209 UniProtKB/TrEMBL • Q6NQY0 Q9VH60
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Periplasmic copper-binding protein NosD, beta helix domain (IPR007742) F-box domain, cyclin-like (IPR001810) Zinc finger, N-recognin (IPR003126) Parallel beta-helix repeat (IPR006626) Carbohydrate-binding/sugar hydrolysis domain (IPR006633) Pectin lyase fold/virulence factor (IPR011050) Parallel beta-helix repeat-2 (IPR022441) Pectin lyase fold (IPR012334) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM01353
Linkouts
	BioGRID - A database of protein and genetic interactions • 66366 DroID - A comprehensive database of gene and protein interactions. • FBgn0037760 DRSC - Results from RNAi screens. • FBgn0037760 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037760 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9461-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037760 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41209 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41209 modMine - Data generated by the modENCODE project. • FBgn0037760
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG9461 (Ditzel et al., 2008, Yamamoto et al., 2009.12.23, Lee et al., 2009, Ni et al., 2008, Roberts et al., 2012, Keleman et al., 2009.8.5, Smibert et al., 2012) dFBX011 (Lee et al., 2009) FBX011 (Roberts et al., 2012, Busser et al., 2012)
Name Synonym	FBX011 ortholog
Secondary FlyBase IDs
References ( 30 )
Generate a list of	All references relating to this gene ( 30 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 2 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 3 )
	Busser et al., 2012, PLoS Genet. 8(3): e1002531 A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis. [FBrf0217716] Dui et al., 2012, J. Genet. Genomics 39(8): 397--413 A Systematic Phenotypic Screen of F-box Genes Through a Tissue-specific RNAi-based Approach in Drosophila. [FBrf0219135] Roberts et al., 2012, PLoS ONE 7(2): e31284 Defining Components of the ßcatenin Destruction Complex and Exploring Its Regulation and Mechanisms of Action during Development. [FBrf0217546] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...