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Gene Dmel\CG6689

General Information
Symbol	Dmel\CG6689	Species	D. melanogaster
Name		Annotation symbol	CG6689
Feature type	protein_coding_gene	FlyBase ID	FBgn0037877
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	86D8-86D8	Sequence location	3R:7,043,620..7,045,766 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG6689 (FBgn0037877). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding; nucleic acid binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, AD-type; Zinc finger, C2CH-type; Zinc finger, C2H2; Zinc finger, C2H2-like; Zinc finger, C2H2-type/integrase, DNA-binding. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1628667_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG6689. Gene sequence location is 3R:7043620..7045766.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN32626 HFA16095
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 86D8-86D8   Limits computationally determined from genome sequence between P{EP}EP3340EP3340 and P{PZ}tho1&P{PZ}l(3)0462905275
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG6689 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG6689-RA FBtr0082368  NM_141794   1889   613
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG6689-PA   FBpp0081844   70.4   613   8.31     NP_650051   AAF54607
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2CH-type (IPR006612) Zinc finger, C2H2 (IPR007087) Zinc finger, AD-type (IPR012934) Zinc finger, C2H2-type/integrase, DNA-binding (IPR013087) Zinc finger, C2H2-like (IPR015880)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201317   AA695439   AA803770   AE014297 AAF54607   AI403667   AI455020   AW941179   BI166738   BI167612   BI236562   BT010095 AAQ22564   BT021397 AAX33545   EC056937   FD585727   FD586047   FD586079   FD586703   FD587362   GH739954   GH741317   GH742095   GH742214   GH743210   GH743524   GH744065   GH745417   GH745714   GH746869   GH761667   GH762043   GH762857   GH762869   GH763847   GH764436   GH764998   GH765920   GH766512   GH766881   GH767450   GH768392   GH769143   GH769635
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q7YTZ5 Q9VGR8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0037877    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0037877 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0037877 expression level Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1587) embryo 02-04hr  (1573) embryo 04-06hr  (1281) embryo 06-08hr  (1475) embryo 08-10hr  (1405) embryo 10-12hr  (1342) embryo 12-14hr  (1065) embryo 14-16hr  (1137) embryo 16-18hr  (1276) embryo 18-20hr  (1267) embryo 20-22hr  (834) embryo 22-24hr  (1052) larva L1  (786) larva L2  (560) larva L3 12hr old  (602) larva L3 puffstage 1-2  (491) larva L3 puffstage 3-6  (586) larva L3 puffstage 7-9  (500) white prepupae new  (617) white prepupae 12hr  (557) white prepupae 24hr  (687) pupae 2d postWPP  (667) pupae 3d postWPP  (913) pupae 4d postWPP  (896) adult male 01day  (1037) adult male 05day  (988) adult male 30day  (946) adult female 01day  (1052) adult female 05day  (1095) adult female 30day  (1119) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1587) embryo 02-04hr  (1573) embryo 04-06hr    1281 embryo 06-08hr  1475 embryo 08-10hr  1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0037877 expression level Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1587) embryo 02-04hr  (1573) embryo 04-06hr  (1281) embryo 06-08hr  (1475) embryo 08-10hr  (1405) embryo 10-12hr  (1342) embryo 12-14hr  (1065) embryo 14-16hr  (1137) embryo 16-18hr  (1276) embryo 18-20hr  (1267) embryo 20-22hr  (834) embryo 22-24hr  (1052) larva L1  (786) larva L2  (560) larva L3 12hr old  (602) larva L3 puffstage 1-2  (491) larva L3 puffstage 3-6  (586) larva L3 puffstage 7-9  (500) white prepupae new  (617) white prepupae 12hr  (557) white prepupae 24hr  (687) pupae 2d postWPP  (667) pupae 3d postWPP  (913) pupae 4d postWPP  (896) adult male 01day  (1037) adult male 05day  (988) adult male 30day  (946) adult female 01day  (1052) adult female 05day  (1095) adult female 30day  (1119) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1587 embryo 02-04hr  1573 embryo 04-06hr    1281 embryo 06-08hr  1475 embryo 08-10hr  1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1587 embryo 02-04hr    1573 embryo 04-06hr    1281 embryo 06-08hr    1475 embryo 08-10hr    1405 embryo 10-12hr    1342 embryo 12-14hr    1065 embryo 14-16hr    1137 embryo 16-18hr    1276 embryo 18-20hr    1267 embryo 20-22hr    834 embryo 22-24hr    1052 larva L1    786 larva L2    560 larva L3 12hr old    602 larva L3 puffstage 1-2    491 larva L3 puffstage 3-6    586 larva L3 puffstage 7-9    500 white prepupae new    617 white prepupae 12hr    557 white prepupae 24hr    687 pupae 2d postWPP    667 pupae 3d postWPP    913 pupae 4d postWPP    896 adult male 01day    1037 adult male 05day    988 adult male 30day    946 adult female 01day    1052 adult female 05day    1095 adult female 30day    1119 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0037877    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0037877 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0037877 expression level Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0037877 expression level Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    74.95 Larval Midgut no informative data Larval Hindgut    73.2 Larval Malpighian Tubules    55.1 Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea    77.525 Larval Carcass    82.9 Adult Head    108.7 Adult Eye    134.2 Adult Brain    137.6 Adult Thoracic-Abdominal Ganglion    124.2 Adult Crop    181.9 Adult Midgut    55.2 Adult Hindgut    112.6 Adult Malpighian Tubules    63.1 Adult Fat Body no informative data Adult Salivary Gland    88.6 Adult Heart    73.575 Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca    60.7 Adult Ovary    71.6 Adult Testis no informative data Adult Male Accessory Gland    76.4 Adult Carcass    113.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut no informative data Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body no informative data Larval Salivary Gland no informative data Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca no informative data Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis no informative data Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    108.7   NA  Eye    134.2   NA  Brain    137.6   74.95  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    124.2   NA  Crop    181.9   no informative data  Midgut    55.2   73.2  Hindgut    112.6   55.1  Malpighian Tubules    63.1   no informative data  Fat Body    no informative data   no informative data  Salivary Gland    88.6   NA  Heart    73.575   77.525  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    60.7   NA  Ovary    71.6   NA  Testis    no informative data   NA  Male Accessory Gland    76.4   82.9  Carcass    113.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_01
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037877 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6689-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG6689 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele semi-lethal | pupal stage, with Scer\GAL4pnr-MD237 CG6689GD12003 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG6689 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG6689 Class Mutagen Stocks Known lesion CG6689GD12003 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG6689KK112626 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12003} NA P{KK112626} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
nucleic acid binding inferred from electronic annotation with InterPro:IPR006612, InterPro:IPR013087 (FlyBase Curators et al., 2004-) zinc ion binding inferred from electronic annotation with InterPro:IPR007087, InterPro:IPR012934, InterPro:IPR015880 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nucleus inferred from electronic annotation with InterPro:IPR012934 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG6689 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66479 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037877 DroID - A comprehensive database of gene and protein interactions. • FBgn0037877 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41345
Orthologs
Genome-wide drosophilid orthologs	Dana\GF18255 Dere\GG17237 Dgri\GH19508 Dmoj\GI22985 Dper\GL12036 Dpse\GA19783 Dsec\GM26116 Dsim\GD20676 Dvir\GJ24682 Dwil\GK14008 Dyak\GE24637
Curated drosophilid orthologs	Dpse\GA19783
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0241747 FBgn0216014 FBgn0211759 FBgn0192142 FBgn0180971 FBgn0079779 FBgn0149644 FBgn0145712 FBgn0126973 FBgn0109464 FBgn0095273
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
VDRC	v104062 P{KK112626}VIE-260B v27710 w1118 P{GD12003}v27710 v27711 w1118 P{GD12003}v27711
Genomic Clones ( 1 )
	BACR48M21 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 40 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM02829 LD13921
Other clones	DPiM_LD13921
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH23153 GM14229 LD04254 LD04259 RE06946 RE08034 RE32633
Other clones	CK01.3D.G8 RM03471 RM03671 RM03971 RM04071 RM04171 RP001000200 RP001002140 RP001005663 RP001008389 RP001008629 RP001009402 RP001010490 RP001010500 RP001012393 RP001012962 RP001013671 RP001015854 RP001016210 RP001017659 RP001020734 RP001025502 RP001025879 RP001031090 RP001031971 RP001037938 RP001042248 RP001043097 RP001044250 RP001048935
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0037877 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41345
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141794 RefSeq (Proteins) • NP_650051 DDBJ / EMBL / GenBank • AA695439 AAF54607 AAQ22564 AAX33545 AW941179 BT010095 BT021397 Entrez Gene - A searchable database of RefSeq genes. • 41345 UniProtKB/TrEMBL • Q7YTZ5 Q9VGR8
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, C2CH-type (IPR006612) Zinc finger, C2H2 (IPR007087) Zinc finger, AD-type (IPR012934) Zinc finger, C2H2-type/integrase, DNA-binding (IPR013087) Zinc finger, C2H2-like (IPR015880)
Linkouts
	BioGRID - A database of protein and genetic interactions • 66479 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0037877 DroID - A comprehensive database of gene and protein interactions. • FBgn0037877 DRSC - Results from RNAi screens. • FBgn0037877 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0037877 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6689-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0037877 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41345 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41345 modMine - Data generated by the modENCODE project. • FBgn0037877 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0241747 FBgn0216014 FBgn0211759 FBgn0192142 FBgn0180971 FBgn0079779 FBgn0149644 FBgn0145712 FBgn0126973 FBgn0109464 FBgn0095273
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG6689 (Chung et al., 2002, Keleman et al., 2009.8.5) dmCG6689 (Roussigne et al., 2003)
Name Synonym
Secondary FlyBase IDs
References ( 13 )
Research paper	Chung et al., 2002, EMBO Rpts 3(12): 1158--1162 Genomic expansion and clustering of ZAD-containing C2H2 zinc-finger genes in Drosophila. [FBrf0155739]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Roussigne et al., 2003, Trends Biochem. Sci. 28(2): 66--69 The THAP domain: a novel protein motif with similarity to the DNA-binding domain of P element transposase. [FBrf0156066]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]
Curated genome annotation	Lei, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126680]