Gene Dmel\scpr-B

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General Information

Symbol

Dmel\scpr-B

Species

D. melanogaster

Name

SCP-containing protein B

Annotation symbol

CG17210

Feature type

protein_coding_gene

FlyBase ID

FBgn0037888

Gene Model Status

Current

Stock availability

3 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

86D8-86D8

Sequence location

3R:7,065,763..7,066,713 [-]

Genomic Maps

Select View:

modENCODE GBrowse

Summary Information

Automatically generated summary

See sections below for more information

The gene SCP-containing protein B is referred to in FlyBase by the symbol Dmel\scpr-B (CG17210, FBgn0037888). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Allergen V5/Tpx-1-related; CAP domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of scpr-B. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of scpr-B. Gene sequence location is 3R:7065763..7066713.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2011_10

References

FlyBase Curators, 2010-, Gene Ontology (GO) annotation review.

FB2012_01

Sequence features

HFA15200

Controlled Vocabulary Terms

molecular_function

biological_process

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

86D8-86D8

Limits computationally determined from genome sequence between P{EP}EP3340^EP3340 and P{PZ}tho¹&P{PZ}l(3)04629⁰⁵²⁷⁵

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\scpr-B for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

scpr-B-RA

FBtr0082362

NM_141804

898

262

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

scpr-B-PA

FBpp0081838

29.3

262

6.49

NP_650061

AAF54622

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Allergen V5/Tpx-1-related (IPR001283)

CAP domain (IPR014044)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

High-Throughput Expression Data

Untitled Document detailed view

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0037888

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	max expr for FBgn0037888
	Very low expression bin max
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of no expression detected. Peak expression observed in adult male stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No expression (0 - 0)
	Extremely low expression (1 - 10)
	Very low expression (11 - 100)
	Low expression (101 - 400)
	Moderate expression (401 - 1400)
	Moderately high expression (1401 - 4000)
	High expression (4001 - 10000)
	Very high expression (10001 - 100000)
	Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0037888 expression level
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		20205
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

Linear, scaled to Very low expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		(502)
pupae 4d postWPP		(1570)
adult male 01day		(8642)
adult male 05day		(20205)
adult male 30day		(5901)
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		(1570)
adult male 01day		(8642)
adult male 05day		(20205)
adult male 30day		(5901)
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		(20205)
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		20205
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to maximum FBgn0037888 expression level
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		20205
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

log, scaled to Very low expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		(502)
pupae 4d postWPP		(1570)
adult male 01day		(8642)
adult male 05day		(20205)
adult male 30day		(5901)
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		(8642)
adult male 05day		(20205)
adult male 30day		(5901)
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		20205
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		20
embryo 02-04hr		22
embryo 04-06hr		28
embryo 06-08hr		22
embryo 08-10hr		40
embryo 10-12hr		10
embryo 12-14hr		6
embryo 14-16hr		17
embryo 16-18hr		0
embryo 18-20hr		2
embryo 20-22hr		10
embryo 22-24hr		2
larva L1		31
larva L2		7
larva L3 12hr old		18
larva L3 puffstage 1-2		10
larva L3 puffstage 3-6		2
larva L3 puffstage 7-9		1
white prepupae new		4
white prepupae 12hr		9
white prepupae 24hr		8
pupae 2d postWPP		84
pupae 3d postWPP		502
pupae 4d postWPP		1570
adult male 01day		8642
adult male 05day		20205
adult male 30day		5901
adult female 01day		18
adult female 05day		40
adult female 30day		37
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_00

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0037888

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG5207-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable

scpr-B^e00007

Sterility

Allele

fertile

scpr-B^e00007

Phenotype manifest in

Allele

Classical Alleles ( 2 )

For All Classical Alleles Show

Allele of scpr-B	Class	Mutagen	Stocks	Known lesion
scpr-B^e00007		piggyBac transposase	2	--
scpr-B^f05917			1	--

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of scpr-B	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD5632}

P{GD5633}

P{GD5634}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{RB}scpr-B^e00007

PBac{WH}CG31388^f05917

Gene Ontology: Function, Process & Cellular Component ( 1 unique term )

There is no information supporting a biological process or molecular function term for this gene.

(Based on a review of available data on: 2011-08-18)

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 1 term )

Molecular Function ( 0 terms)

Biological Process ( 0 terms)

Cellular Component

CV term

Evidence

References

extracellular region

inferred from sequence model

(Kovalick and Griffin, 2005)

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Protein-protein

Interacting group

Assay

References

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

scpr-B allele

Gene

References

External Data

Linkouts

BioGRID - A database of protein and genetic interactions

•

66490

DPiM - DPiM, Drosophila Protein interaction Map

•

FBgn0037888

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0037888

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

41357

Orthologs

Genome-wide drosophilid orthologs

Curated drosophilid orthologs

Linkouts

OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.

•

Stocks & Reagents

Stocks Listed in FlyBase ( 3 )

Bloomington

17806

w¹¹¹⁸; PBac{RB}scpr-B^e00007

18917

w¹¹¹⁸; PBac{WH}CG31388^f05917 scpr-B^f05917

Harvard

PBac{RB}scpr-B^e00007

Genomic Clones ( 2 )

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 26 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones