FlyBase Gene Report: Dmel\fabp

General Information

Symbol

Dmel\fabp

Species

D. melanogaster

Name

fatty acid binding protein

Annotation Symbol

CG6783

Feature Type

protein_coding_gene

FlyBase ID

FBgn0037913

Gene Model Status

Current

Stock Availability

7 publicly available

Gene Snapshot

fatty acid binding protein (fabp) encodes a protein involved in long term memory. [Date last reviewed: 2019-03-07]

Other Summaries

Alliance
Auto summary
Interactive Fly

Also Known As

dFabp

Key Links

Genomic Location

Cytogenetic map

86E10-86E10

Sequence location

3R:11,559,896..11,567,054 [-]

Recombination map

3-51

RefSeq locus

NT_033777 REGION:11559896..11567054

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

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Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (4 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables lipid binding

inferred from electronic annotation with InterPro:IPR000463, InterPro:IPR031259

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

Biological Process (1 term)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

involved_in long-term memory

inferred from mutant phenotype

(Gerstner et al., 2011)

Terms Based on Predictions or Assertions (0 terms)

Cellular Component (2 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

located_in cytosol

inferred from high throughput direct assay

(Lye et al., 2014)

located_in nucleoplasm

inferred from high throughput direct assay

(Lye et al., 2014)

Terms Based on Predictions or Assertions (0 terms)

Gene Group (FlyBase)

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\fabp for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

gene_with_dicistronic_mRNA ; SO:0000722

Gene model reviewed during 5.53

Multiphase exon postulated: this gene shares a region of coding sequence with an overlapping gene, but different reading frames are utilized in the overlapping coding region; overlap >20aa.

Sequence Ontology: Class of Gene

gene_with_dicistronic_mRNA

(FlyBase Genome Annotators, 2002-2003)

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

fabp-RA

FBtr0100320

NM_001032010

1051

117

fabp-RB

FBtr0100321

NM_001032009

723

130

fabp-RC

FBtr0100323

NM_001032008

1660

157

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

fabp-PA

FBpp0099725

12.8

117

6.51

NP_001027181

AAF54655

fabp-PB

FBpp0099726

14.5

130

5.29

NP_001027180

AAN13512

fabp-PC

FBpp0099728

17.1

157

5.81

NP_001027179

AAN13511

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\fabp using the Feature Mapper tool.

External Data

Crossreferences

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 13 -- 16

medial-most cell body glial cell

(Kearney et al., 2004)

embryonic stage 11 -- 16

dorsal lateral subperineurial glial cell