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Gene Dmel\CG17202

General Information
Symbol	Dmel\CG17202	Species	D. melanogaster
Name		Annotation symbol	CG17202
Feature type	protein_coding_gene	FlyBase ID	FBgn0038043
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	87B9-87B9	Sequence location	3R:8,248,490..8,249,328 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG17202 (FBgn0038043). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: transcription coactivator activity; cAMP-dependent protein kinase regulator activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: signal transduction; regulation of transcription, DNA-dependent. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Associate of Myc 1; cAMP-dependent protein kinase, regulatory subunit, type I/II alpha/beta. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult midgut, larval hindgut, larval Malpighian tubules, larval fat body, larval salivary gland, larval trachea, adult ovary, adult male reproductive system, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1635603_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG17202. Gene sequence location is 3R:8248490..8249328.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 87B9-87B9   Limits computationally determined from genome sequence between P{PZ}svp07842 and P{lacW}Vha55j2E9
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG17202 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG17202-RA FBtr0082587  NM_141937   777   181
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG17202-PA   FBpp0082059   20.2   181   4.34     NP_650194   AAF54809
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • cAMP-dependent protein kinase, regulatory subunit, type I/II alpha/beta (IPR003117) Associate of Myc 1 (IPR026060)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54809   AY094915 AAM11268   AY232116   BE975036   BE976680   BI582787   BI630668   CZ484476   EC076598
UniProtKB/Swiss-Prot	Q9VG76
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult midgut, larval hindgut, larval Malpighian tubules, larval fat body, larval salivary gland, larval trachea, adult ovary, adult male reproductive system, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    397.25 Larval Midgut    94 Larval Hindgut    106.7 Larval Malpighian Tubules    102 Larval Fat Body    167.5 Larval Salivary Gland    210.9 Larval Trachea    244.275 Larval Carcass    113.675 Adult Head    98.2 Adult Eye    174.35 Adult Brain    191.1 Adult Thoracic-Abdominal Ganglion    134.5 Adult Crop    57.4 Adult Midgut    101.8 Adult Hindgut    83.7 Adult Malpighian Tubules    51.9 Adult Fat Body    76.9 Adult Salivary Gland    92.1 Adult Heart    78.05 Adult VirginFemale Spermatheca    48.2 Adult InseminatedFemale Spermatheca    52.5 Adult Ovary    456.6 Adult Testis    251.2 Adult Male Accessory Gland    317.3 Adult Carcass    61.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    98.2   NA  Eye    174.35   NA  Brain    191.1   397.25  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    134.5   NA  Crop    57.4   94  Midgut    101.8   106.7  Hindgut    83.7   102  Malpighian Tubules    51.9   167.5  Fat Body    76.9   210.9  Salivary Gland    92.1   NA  Heart    78.05   244.275  Trachea    NA   NA  VirginFemale Spermatheca    48.2   NA  InseminatedFemale Spermatheca    52.5   NA  Ovary    456.6   NA  Testis    251.2   NA  Male Accessory Gland    317.3   113.675  Carcass    61.7 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    134 central nervous system, larvae L3    165 central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8    199 carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female    249 ovary, mated 4-day female    244 testis, mated 4-day male    238 accessory gland, mated 4-day male    76 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (134) central nervous system, larvae L3  (165) central nervous system, pupae P8  (52) head, virgin 1-day female  26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female  (29) head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male  (31) head, mated 4-day male  (37) head, mated 20-day male  (45) salivary gland, larvae L3 wandering    23 salivary gland, white prepupae  (41) digestive system, larvae L3 wandering  (59) digestive system, 1-day adult  (35) digestive system, 4-day adult  (43) digestive system, 20-day adult  (36) fat body, larvae L3 wandering  (30) fat body, white prepupae  (75) fat body, pupae P8  (199) carcass, larvae L3 wandering  (87) carcass, 1-day adult    16 carcass, 4-day adult  26 carcass, 20-day adult    25 ovary, virgin 4-day female  (249) ovary, mated 4-day female  (244) testis, mated 4-day male  (238) accessory gland, mated 4-day male  (76) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (134) central nervous system, larvae L3  (165) central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8  (199) carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female  (249) ovary, mated 4-day female  (244) testis, mated 4-day male  (238) accessory gland, mated 4-day male    76 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    134 central nervous system, larvae L3    165 central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8    199 carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female    249 ovary, mated 4-day female    244 testis, mated 4-day male    238 accessory gland, mated 4-day male    76 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    134 central nervous system, larvae L3    165 central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8    199 carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female    249 ovary, mated 4-day female    244 testis, mated 4-day male    238 accessory gland, mated 4-day male    76 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (134) central nervous system, larvae L3  (165) central nervous system, pupae P8  (52) head, virgin 1-day female  26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female  29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male  31 head, mated 4-day male  (37) head, mated 20-day male  (45) salivary gland, larvae L3 wandering    23 salivary gland, white prepupae  (41) digestive system, larvae L3 wandering  (59) digestive system, 1-day adult  (35) digestive system, 4-day adult  (43) digestive system, 20-day adult  (36) fat body, larvae L3 wandering  30 fat body, white prepupae  (75) fat body, pupae P8  (199) carcass, larvae L3 wandering  (87) carcass, 1-day adult    16 carcass, 4-day adult  26 carcass, 20-day adult    25 ovary, virgin 4-day female  (249) ovary, mated 4-day female  (244) testis, mated 4-day male  (238) accessory gland, mated 4-day male  (76) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  134 central nervous system, larvae L3  (165) central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8  (199) carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female  (249) ovary, mated 4-day female  (244) testis, mated 4-day male  (238) accessory gland, mated 4-day male    76 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    134 central nervous system, larvae L3    165 central nervous system, pupae P8    52 head, virgin 1-day female    26 head, virgin 4-day female    21 head, virgin 20-day female    18 head, mated 1-day female    29 head, mated 4-day female    23 head, mated 20-day female    20 head, mated 1-day male    31 head, mated 4-day male    37 head, mated 20-day male    45 salivary gland, larvae L3 wandering    23 salivary gland, white prepupae    41 digestive system, larvae L3 wandering    59 digestive system, 1-day adult    35 digestive system, 4-day adult    43 digestive system, 20-day adult    36 fat body, larvae L3 wandering    30 fat body, white prepupae    75 fat body, pupae P8    199 carcass, larvae L3 wandering    87 carcass, 1-day adult    16 carcass, 4-day adult    26 carcass, 20-day adult    25 ovary, virgin 4-day female    249 ovary, mated 4-day female    244 testis, mated 4-day male    238 accessory gland, mated 4-day male    76 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    141 embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day    116 adult female 30day    129 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (141) embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr  (50) embryo 08-10hr  (47) embryo 10-12hr  (45) embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2  (27) larva L3 12hr old  (28) larva L3 puffstage 1-2  (35) larva L3 puffstage 3-6  (57) larva L3 puffstage 7-9  (63) white prepupae new  (64) white prepupae 12hr  (58) white prepupae 24hr  (69) pupae 2d postWPP  (44) pupae 3d postWPP  26 pupae 4d postWPP    23 adult male 01day  (29) adult male 05day  (45) adult male 30day  (36) adult female 01day  (63) adult female 05day  (116) adult female 30day  (129) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (141) embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day  (116) adult female 30day  (129) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    141 embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day    116 adult female 30day    129 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    141 embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day    116 adult female 30day    129 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (141) embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr  (50) embryo 08-10hr  (47) embryo 10-12hr  (45) embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2  27 larva L3 12hr old  28 larva L3 puffstage 1-2  (35) larva L3 puffstage 3-6  (57) larva L3 puffstage 7-9  (63) white prepupae new  (64) white prepupae 12hr  (58) white prepupae 24hr  (69) pupae 2d postWPP  (44) pupae 3d postWPP  26 pupae 4d postWPP    23 adult male 01day  29 adult male 05day  (45) adult male 30day  (36) adult female 01day  (63) adult female 05day  (116) adult female 30day  (129) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  141 embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day  116 adult female 30day  129 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    141 embryo 02-04hr    11 embryo 04-06hr    24 embryo 06-08hr    50 embryo 08-10hr    47 embryo 10-12hr    45 embryo 12-14hr    25 embryo 14-16hr    23 embryo 16-18hr    19 embryo 18-20hr    23 embryo 20-22hr    18 embryo 22-24hr    14 larva L1    22 larva L2    27 larva L3 12hr old    28 larva L3 puffstage 1-2    35 larva L3 puffstage 3-6    57 larva L3 puffstage 7-9    63 white prepupae new    64 white prepupae 12hr    58 white prepupae 24hr    69 pupae 2d postWPP    44 pupae 3d postWPP    26 pupae 4d postWPP    23 adult male 01day    29 adult male 05day    45 adult male 30day    36 adult female 01day    63 adult female 05day    116 adult female 30day    129 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1    138 embryonic S3    73 leg disc CME L1    121 wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3    105 wing disc ML-DmD21    204 wing disc ML-DmD32    104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11    103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1    112 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS    145 ovary OSC    200 ovary OSS    131 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (81) Schneider line 2 Sg4  (72) embryonic 1182-4H  (57) embryonic GM2  (64) embryonic Kc167    23 embryonic S1  (138) embryonic S3  (73) leg disc CME L1  (121) wing disc CME-W2  (94) wing disc ML-DmD8  (80) wing disc ML-DmD9  (88) wing disc ML-DmD16-c3  (105) wing disc ML-DmD21  (204) wing disc ML-DmD32  (104) haltere disc ML-DmD17-c3  (87) eye-antennal disc ML-DmD11  (103) antennal disc ML-DmD20-c5  (97) mixed discs ML-DmD4-c1  (100) CNS ML-DmBG1-c1  (112) CNS ML-DmBG2-c2  (63) tumorous blood cells mbn2  (49) ovary fGS/OSS  (145) ovary OSC  (200) ovary OSS  (131) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1  (138) embryonic S3    73 leg disc CME L1  (121) wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3  105 wing disc ML-DmD21  (204) wing disc ML-DmD32  104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11  103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1  (112) CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS  (145) ovary OSC  (200) ovary OSS  (131) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1    138 embryonic S3    73 leg disc CME L1    121 wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3    105 wing disc ML-DmD21    204 wing disc ML-DmD32    104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11    103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1    112 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS    145 ovary OSC    200 ovary OSS    131 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1    138 embryonic S3    73 leg disc CME L1    121 wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3    105 wing disc ML-DmD21    204 wing disc ML-DmD32    104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11    103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1    112 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS    145 ovary OSC    200 ovary OSS    131 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (81) Schneider line 2 Sg4  (72) embryonic 1182-4H  (57) embryonic GM2  (64) embryonic Kc167    23 embryonic S1  (138) embryonic S3  (73) leg disc CME L1  (121) wing disc CME-W2  (94) wing disc ML-DmD8  (80) wing disc ML-DmD9  (88) wing disc ML-DmD16-c3  (105) wing disc ML-DmD21  (204) wing disc ML-DmD32  (104) haltere disc ML-DmD17-c3  (87) eye-antennal disc ML-DmD11  (103) antennal disc ML-DmD20-c5  (97) mixed discs ML-DmD4-c1  (100) CNS ML-DmBG1-c1  (112) CNS ML-DmBG2-c2  (63) tumorous blood cells mbn2  (49) ovary fGS/OSS  (145) ovary OSC  (200) ovary OSS  (131) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1  138 embryonic S3    73 leg disc CME L1  121 wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3  105 wing disc ML-DmD21  (204) wing disc ML-DmD32  104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11  103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1  112 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS  (145) ovary OSC  (200) ovary OSS  131 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    81 Schneider line 2 Sg4    72 embryonic 1182-4H    57 embryonic GM2    64 embryonic Kc167    23 embryonic S1    138 embryonic S3    73 leg disc CME L1    121 wing disc CME-W2    94 wing disc ML-DmD8    80 wing disc ML-DmD9    88 wing disc ML-DmD16-c3    105 wing disc ML-DmD21    204 wing disc ML-DmD32    104 haltere disc ML-DmD17-c3    87 eye-antennal disc ML-DmD11    103 antennal disc ML-DmD20-c5    97 mixed discs ML-DmD4-c1    100 CNS ML-DmBG1-c1    112 CNS ML-DmBG2-c2    63 tumorous blood cells mbn2    49 ovary fGS/OSS    145 ovary OSC    200 ovary OSS    131 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult    165 Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult    125 Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    142 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (93) cold shock, 4-day adult  (66) heat shock, 4-day adult  (73) Cadmium 50 mM 6 hrs, larvae L3  (33) Cadmium 50 mM 12 hrs, larvae L3  (45) Cadmium 50 mM 48 hrs, 4-day adult  (69) Cadmium 100 mM 48 hrs, 4-day adult  (165) Copper 0.5 mM 12 hrs, larvae L3  (48) Copper 15 mM 48 hrs, 4-day adult  (125) Zinc 5 mM 12 hrs, larvae L3  (39) Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (142) Ethanol 5% 3 hrs, larvae L3  26 Ethanol 10% 3 hrs, larvae L3  (32) Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  (76) Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult  (99) Rotenone 2 μg 12 hrs, larvae L3  (33) Rotenone 8 μg 12 hrs, larvae L3  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult  (165) Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult  (125) Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3  (142) Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult    165 Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult    125 Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    142 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult    165 Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult    125 Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    142 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (93) cold shock, 4-day adult  (66) heat shock, 4-day adult  (73) Cadmium 50 mM 6 hrs, larvae L3  (33) Cadmium 50 mM 12 hrs, larvae L3  (45) Cadmium 50 mM 48 hrs, 4-day adult  (69) Cadmium 100 mM 48 hrs, 4-day adult  (165) Copper 0.5 mM 12 hrs, larvae L3  (48) Copper 15 mM 48 hrs, 4-day adult  (125) Zinc 5 mM 12 hrs, larvae L3  (39) Zinc 4.5 mM 48 hrs, 4-day adult  (56) Ethanol 2.5% 3 hrs, larvae L3  (142) Ethanol 5% 3 hrs, larvae L3  26 Ethanol 10% 3 hrs, larvae L3  32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  (76) Paraquat 5 mM 48 hrs, 4-day adult  (120) Paraquat 10 mM 48 hrs, 4-day adult  (99) Rotenone 2 μg 12 hrs, larvae L3  (33) Rotenone 8 μg 12 hrs, larvae L3  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult  (165) Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult  125 Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3  142 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult  120 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    93 cold shock, 4-day adult    66 heat shock, 4-day adult    73 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    45 Cadmium 50 mM 48 hrs, 4-day adult    69 Cadmium 100 mM 48 hrs, 4-day adult    165 Copper 0.5 mM 12 hrs, larvae L3    48 Copper 15 mM 48 hrs, 4-day adult    125 Zinc 5 mM 12 hrs, larvae L3    39 Zinc 4.5 mM 48 hrs, 4-day adult    56 Ethanol 2.5% 3 hrs, larvae L3    142 Ethanol 5% 3 hrs, larvae L3    26 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    24 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    76 Paraquat 5 mM 48 hrs, 4-day adult    120 Paraquat 10 mM 48 hrs, 4-day adult    99 Rotenone 2 μg 12 hrs, larvae L3    33 Rotenone 8 μg 12 hrs, larvae L3    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_02 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • RH21090 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038043 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17202-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG17202 Class Mutagen Stocks Known lesion CG17202f01979 piggyBac transposase 2 -- CG17202unspecified 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG17202 Class Mutagen Stocks Known lesion CG17202KK109787 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG17202+tJa in vitro construct - genomic fragment 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6164 (Ryder, 2004.4.26) Df(3R)Exel6165 (Ryder, 2004.4.26) Df(3R)Exel7316 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9311} NA P{KK109787} NA characterization construct P{CG17202+tJa} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG17202f01979 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function
CV term Evidence References
cAMP-dependent protein kinase regulator activity inferred from electronic annotation with InterPro:IPR003117 (FlyBase Curators et al., 2004-) transcription coactivator activity inferred from electronic annotation with InterPro:IPR026060 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
regulation of transcription, DNA-dependent inferred from electronic annotation with InterPro:IPR026060 (FlyBase Curators et al., 2004-) signal transduction inferred from electronic annotation with InterPro:IPR003117 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
nucleus inferred from sequence or structural similarity with UniProtKB:Q99417 (assigned by UniProtKB) (GOA Curators et al., 2007)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG17202 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0038043
Orthologs
OrthoDB Orthologs (16) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6HDTF6 Dipteran inclusive ortholog search EOG6PCB2M Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search EOG6NGF4W Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6HDTF6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG17202     Drosophila simulans   Dsim\GD18831 Y   Drosophila sechellia   Dsec\GM24030 Y   Drosophila erecta   Dere\GG18894 Y   Drosophila yakuba   Dyak\GE26191 Y   Drosophila ananassae   Dana\GF17955 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA14386 Y   Drosophila persimilis   Dper\GL27310 Y   Drosophila willistoni   Dwil\GK14402 Y   Drosophila virilis   Dvir\GJ24470 Y   Drosophila mojavensis   Dmoj\GI24827 Y   Drosophila grimshawi   Dgri\GH13886 Y
Orthologs in non-Drosophila Dipterans (EOG6PCB2M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004436   Anopheles gambiae Malaria mosquito  Agam\AGAP011164   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013350
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (EOG6NGF4W)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW016280
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD18831 Drosophila sechellia Dsec\GM24030 Drosophila erecta Dere\GG18894 Drosophila yakuba Dyak\GE26191 Drosophila ananassae Dana\GF17955 Drosophila pseudoobscura pseudoobscura Dpse\GA14386 Drosophila persimilis Dper\GL27310 Drosophila willistoni Dwil\GK14402 Drosophila virilis Dvir\GJ24470 Drosophila mojavensis Dmoj\GI24827 Drosophila grimshawi Dgri\GH13886
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	18498 w1118; PBac{WH}CG17202f01979/TM6B, Tb1
Harvard	- PBac{WH}CG17202f01979
VDRC	v104805 P{KK109787}VIE-260B
Genomic Clones ( 1 )
	BACR28I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 6 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH21090
Other clones	yak-ad_CG17202
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RH59951
Other clones	106661 bs37h07 bs54e12
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038043 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41526
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG17202 BcDNA:RH21090 (FlyBase, 1996-)
Additional comments	Source for merge of CG17202 BcDNA:RH21090 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141937 RefSeq (Proteins) • NP_650194 DDBJ / EMBL / GenBank • AAF54809 AAM11268 AY094915 BI582787 CZ484476 Entrez Gene - A searchable database of RefSeq genes. • 41526 UniProtKB/Swiss-Prot • Q9VG76
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • cAMP-dependent protein kinase, regulatory subunit, type I/II alpha/beta (IPR003117) Associate of Myc 1 (IPR026060) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RH21090
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0038043 DRSC - Results from RNAi screens. • FBgn0038043 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038043 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17202-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038043 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41526 modMine - Data generated by the modENCODE project. • FBgn0038043
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:RH21090   CG17202 (Geng and MacDonald, 2007, Keleman et al., 2009.8.5, Johnson et al., 2010)
Name Synonym
Secondary FlyBase IDs
	FBgn0062436
References ( 16 )
Research paper	Johnson et al., 2010, PLoS Genet. 6(3): e1000872 PPS, a Large Multidomain Protein, Functions with Sex-Lethal to Regulate Alternative Splicing in Drosophila. [FBrf0210202] Geng and MacDonald, 2007, Fly 1(5): 259--267 Identification of genes that influence gurken expression. [FBrf0205043]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] GOA Curators et al., 2007, Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity. Manual transfer of experimentally-verified manual GO annotation data to orthologs by curator judgment of sequence similarity. [FBrf0212479] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2010-, Gene Ontology (GO) annotation review. Gene Ontology (GO) annotation review. [FBrf0216433] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]
Protein sequence record	Swiss-Prot Project Members, 2002.3.1, UniProtKB: Q9VG76 C-Myc binding protein homolog. [FBrf0151089]