A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\CG7518

General Information
SymbolDmel\CG7518SpeciesD. melanogaster
NameAnnotation symbolCG7518
Feature typeprotein_coding_geneFlyBase IDFBgn0038108
Gene Model StatusCurrent Stock availability 5 publicly available
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map87D7-87D8Sequence location3R:8,823,811..8,834,126 [+]

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Automatically generated summary

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This gene is referred to in FlyBase by the symbol Dmel\CG7518 (FBgn0038108). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval hindgut, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1635116_a_at completely aligns to an exonic region of only a subset of 2 of the 3 FlyBase-annotated transcript isoforms of CG7518. Gene sequence location is 3R:8823811..8834126.

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Description
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FB2013_03
FB2013_02
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
87D7-87D8  
Limits computationally determined from genome sequence between P{lacW}Vha55j2E9 and P{PZ}CtBP03463  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\CG7518 for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0082695 FBtr0336814 FBtr0082721 FBtr0336813 FBtr0306257 FBtr0334512 FBtr0334510 FBtr0334511 FBtr0306256 FBtr0082698 FBtr0082719 FBpp0082163 FBpp0307782 FBpp0082189 FBpp0307783 FBpp0306578 FBpp0306577 FBpp0297366 FBpp0306579 FBpp0297367 FBpp0082166 FBpp0082187 FBti0103007 FBti0053596 FBti0027116 FBti0102765 FBti0034972
Comments on Gene Model
Gene model reviewed during 5.47
Low-frequency RNA-Seq exon junction(s) not annotated.
Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters.
DGC clone GH08916 appears problematic: incomplete CDS
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0306256
  8128
  2460
FBtr0306257
  7578
  2306
FBtr0334510
  8140
  2464
FBtr0334511
  7590
  2310
FBtr0334512
  8273
  2360
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
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Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0297366  
268.0  
2460  
8.44  
FBpp0297367  
252.5  
2306  
8.67  
FBpp0306577  
268.6  
2464  
8.44  
FBpp0306578  
253.1  
2310  
8.67  
FBpp0306579  
258.6  
2360  
8.89  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
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hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, larval/adult central nervous system, adult crop, larval hindgut, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 313.2
Larval Midgut
 
 66.7
Larval Hindgut
 
 111.2
Larval Malpighian Tubules
 
 88.5
Larval Fat Body
 
 60.6
Larval Salivary Gland
 
 100.7
Larval Trachea
 
 131.925
Larval Carcass
 
 148.15
Adult Head
 
 83.8
Adult Eye
 
 128.925
Adult Brain
 
 301.2
Adult Thoracic-Abdominal Ganglion
 
 235.5
Adult Crop
 
 103.2
Adult Midgut
 
 48.3
Adult Hindgut
 
 97.3
Adult Malpighian Tubules
 
 57.4
Adult Fat Body
 
 62.8
Adult Salivary Gland
 
 147.8
Adult Heart
 
 74.1
Adult VirginFemale Spermatheca
 
 53.9
Adult InseminatedFemale Spermatheca
 
 60.7
Adult Ovary
 
 169.6
Adult Testis
 
 33.4
Adult Male Accessory Gland
 
 148.1
Adult Carcass
 
 93.3
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 83.8
 
NA 
Eye
 
 128.925
 
NA 
Brain
 
 301.2
 
313.2 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 235.5
 
NA 
Crop
 
 103.2
 
66.7 
Midgut
 
 48.3
 
111.2 
Hindgut
 
 97.3
 
88.5 
Malpighian Tubules
 
 57.4
 
60.6 
Fat Body
 
 62.8
 
100.7 
Salivary Gland
 
 147.8
 
NA 
Heart
 
 74.1
 
131.925 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 53.9
 
NA 
InseminatedFemale Spermatheca
 
 60.7
 
NA 
Ovary
 
 169.6
 
NA 
Testis
 
 33.4
 
NA 
Male Accessory Gland
 
 148.1
 
148.15 
Carcass
 
 93.3

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 (33)
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 (33)
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 25
central nervous system, larvae L3
 
 33
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 8
head, virgin 4-day female
 
 8
head, virgin 20-day female
 
 8
head, mated 1-day female
 
 7
head, mated 4-day female
 
 6
head, mated 20-day female
 
 8
head, mated 1-day male
 
 12
head, mated 4-day male
 
 11
head, mated 20-day male
 
 10
salivary gland, larvae L3 wandering
 
 0
salivary gland, white prepupae
 
 4
digestive system, larvae L3 wandering
 
 4
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 5
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 4
fat body, white prepupae
 
 8
fat body, pupae P8
 
 7
carcass, larvae L3 wandering
 
 17
carcass, 1-day adult
 
 6
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 26
ovary, mated 4-day female
 
 23
testis, mated 4-day male
 
 12
accessory gland, mated 4-day male
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (45)
embryo 02-04hr
 
 24
embryo 04-06hr
 (27)
embryo 06-08hr
 (27)
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 (30)
adult female 30day
 (30)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (45)
embryo 02-04hr
 
 24
embryo 04-06hr
 27
embryo 06-08hr
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 30
adult female 30day
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 45
embryo 02-04hr
 
 24
embryo 04-06hr
 
 27
embryo 06-08hr
 
 27
embryo 08-10hr
 
 19
embryo 10-12hr
 
 16
embryo 12-14hr
 
 13
embryo 14-16hr
 
 18
embryo 16-18hr
 
 10
embryo 18-20hr
 
 9
embryo 20-22hr
 
 7
embryo 22-24hr
 
 6
larva L1
 
 10
larva L2
 
 7
larva L3 12hr old
 
 7
larva L3 puffstage 1-2
 
 8
larva L3 puffstage 3-6
 
 16
larva L3 puffstage 7-9
 
 15
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 25
pupae 2d postWPP
 
 25
pupae 3d postWPP
 
 10
pupae 4d postWPP
 
 9
adult male 01day
 
 10
adult male 05day
 
 13
adult male 30day
 
 12
adult female 01day
 
 22
adult female 05day
 
 30
adult female 30day
 
 30
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (31)
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 (33)
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 (31)
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 (28)
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 (30)
ovary OSC
 (28)
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 (33)
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 30
ovary OSC
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 31
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 20
embryonic GM2
 
 19
embryonic Kc167
 
 13
embryonic S1
 
 33
embryonic S3
 
 11
leg disc CME L1
 
 22
wing disc CME-W2
 
 18
wing disc ML-DmD8
 
 14
wing disc ML-DmD9
 
 22
wing disc ML-DmD16-c3
 
 21
wing disc ML-DmD21
 
 17
wing disc ML-DmD32
 
 31
haltere disc ML-DmD17-c3
 
 19
eye-antennal disc ML-DmD11
 
 23
antennal disc ML-DmD20-c5
 
 14
mixed discs ML-DmD4-c1
 
 13
CNS ML-DmBG1-c1
 
 28
CNS ML-DmBG2-c2
 
 17
tumorous blood cells mbn2
 
 10
ovary fGS/OSS
 
 30
ovary OSC
 
 28
ovary OSS
 
 13
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 11
cold shock, 4-day adult
 
 7
heat shock, 4-day adult
 
 9
Cadmium 50 mM 6 hrs, larvae L3
 
 4
Cadmium 50 mM 12 hrs, larvae L3
 
 2
Cadmium 50 mM 48 hrs, 4-day adult
 
 9
Cadmium 100 mM 48 hrs, 4-day adult
 
 17
Copper 0.5 mM 12 hrs, larvae L3
 
 4
Copper 15 mM 48 hrs, 4-day adult
 
 7
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 7
Ethanol 2.5% 3 hrs, larvae L3
 
 20
Ethanol 5% 3 hrs, larvae L3
 
 3
Ethanol 10% 3 hrs, larvae L3
 
 3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 14
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 9
Paraquat 5 mM 48 hrs, 4-day adult
 
 16
Paraquat 10 mM 48 hrs, 4-day adult
 
 17
Rotenone 2 μg 12 hrs, larvae L3
 
 2
Rotenone 8 μg 12 hrs, larvae L3
 
 3
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 3 )
For All Classical Alleles Show

Allele of CG7518ClassMutagenStocksKnown lesion
CG7518EY020341 --
CG7518f076041 --
CG7518NP2652
1 --
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG7518ClassMutagenStocksKnown lesion
CG7518GD122622 Yes
CG7518KK1059130 Yes
CG7518NIG.7518R0 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
miscellaneous insertions
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 0 terms )
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
experimental knowledge based
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
CG7518 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (22) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
hideOrthologs in Drosophila Species (EOG6KPTW6)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
 
Y
Drosophila sechellia
 
Y
Y
Drosophila erecta
 
Y
Y
Drosophila yakuba
 
 
Y
Drosophila yakuba
 
Y
Y
Drosophila ananassae
 
 
Y
Drosophila ananassae
 
Y
Y
Drosophila ananassae
 
 
Y
Drosophila pseudoobscura pseudoobscura
 
Y
Y
Drosophila persimilis
 
Y
Y
Drosophila persimilis
 
 
Y
Drosophila willistoni
 
 
Y
Drosophila willistoni
 
Y
Y
Drosophila virilis
 
Y
Y
Drosophila virilis
 
 
Y
Drosophila mojavensis
 
Y
Y
Drosophila grimshawi
 
Y
Y
hideOrthologs in non-Drosophila Dipterans (EOG6QNN4K)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Anopheles gambiae
Malaria mosquito 
Y
Anopheles gambiae
Malaria mosquito 
Y
Culex quinquefasciatus
Southern house mosquito 
Y
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
hide Human Orthologs (0)
Gene
OMIM
HGNC
hideAAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 5 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 33 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 20 )
Research paper
Bhutkar et al., 2007, Genome Res. 17(12): 1880--1887
Genome-scale analysis of positionally relocated genes. [FBrf0202666]
Minidorff et al., 2007, Genetics 176(4): 2247--2263
A Gain-of-Function Screen for Genes That Influence Axon Guidance Identifies the NF-κB Protein Dorsal and Reveals a Requirement for the Kinase Pelle in Drosophila Photoreceptor Axon Targeting. [FBrf0202193]
Supplementary material
Graveley et al., 2011, Nature 471(7339):
Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
Guruharsha et al., 2011, Cell 147(3):
Table S3. [FBrf0218395]
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Minidorff et al., 2007, Genetics 176(4):
Supplemental Table. [FBrf0206126]
Giot et al., 2003, Science 302(5651):
Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project
DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file)
Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Gene Disruption Project members, 2001-, (Computer file)
(Computer file) [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file)
Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis
FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.
Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation.
FlyBase curation. [FBrf0105495]
Stock list
Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.
RNAi stocks available from NIG-FLY. [FBrf0218457]
Website
Fisher et al., 2012, BDGP insitu homepage
BDGP insitu homepage [FBrf0219073]
Curated genome annotation
FamiliarityBreedsContempt, 1999.11, [Automatic annotations performed at the Celera Jamboreee.]
[Automatic annotations performed at the Celera Jamboreee.] [FBrf0126705]