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Gene Dmel\CG9922

General Information
Symbol	Dmel\CG9922	Species	D. melanogaster
Name		Annotation symbol	CG9922
Feature type	protein_coding_gene	FlyBase ID	FBgn0038196
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	88A4-88A4	Sequence location	3R:9,860,738..9,861,887 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9922 (FBgn0038196). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult female reproductive system, adult male reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1625394_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9922. Gene sequence location is 3R:9860738..9861887.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA16579
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 88A4-88A4   Limits computationally determined from genome sequence between P{PZ}flfl01949 and P{lacW}trxj14A6&P{PZ}trx00347
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9922 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9922-RA FBtr0082870  NM_142072   775   124
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9922-PA   FBpp0082333   14.0   124   4.39     NP_650329   AAF55011
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF55011   AI944575   AI946617   AY071481 AAL49103   BE975279   BI142241   BI369030   BI485285   BP540994   BP540995   BP546644   BP559203   BP559204   CO326689   EC200237   EC253121
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VFN9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0038196    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0038196 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages, during early larval stages, at stages throughout the pupal period, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0038196 expression level Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4794) embryo 02-04hr  (1771) embryo 04-06hr  (3677) embryo 06-08hr  (3492) embryo 08-10hr  (3682) embryo 10-12hr  (3883) embryo 12-14hr  (2901) embryo 14-16hr  (1307) embryo 16-18hr  (1978) embryo 18-20hr  (1832) embryo 20-22hr  (2747) embryo 22-24hr  (2673) larva L1  (3599) larva L2  (4487) larva L3 12hr old  (3072) larva L3 puffstage 1-2  (2203) larva L3 puffstage 3-6  (2551) larva L3 puffstage 7-9  (3815) white prepupae new  (4328) white prepupae 12hr  (3396) white prepupae 24hr  (4152) pupae 2d postWPP  (4715) pupae 3d postWPP  (3488) pupae 4d postWPP  (1772) adult male 01day  (3162) adult male 05day  (3679) adult male 30day  (2366) adult female 01day  (2052) adult female 05day  (5255) adult female 30day  (4925) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4794) embryo 02-04hr  (1771) embryo 04-06hr  (3677) embryo 06-08hr  (3492) embryo 08-10hr  (3682) embryo 10-12hr  (3883) embryo 12-14hr  (2901) embryo 14-16hr    1307 embryo 16-18hr  (1978) embryo 18-20hr  (1832) embryo 20-22hr  (2747) embryo 22-24hr  (2673) larva L1  (3599) larva L2  (4487) larva L3 12hr old  (3072) larva L3 puffstage 1-2  (2203) larva L3 puffstage 3-6  (2551) larva L3 puffstage 7-9  (3815) white prepupae new  (4328) white prepupae 12hr  (3396) white prepupae 24hr  (4152) pupae 2d postWPP  (4715) pupae 3d postWPP  (3488) pupae 4d postWPP  (1772) adult male 01day  (3162) adult male 05day  (3679) adult male 30day  (2366) adult female 01day  (2052) adult female 05day  (5255) adult female 30day  (4925) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0038196 expression level Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (4794) embryo 02-04hr  (1771) embryo 04-06hr  (3677) embryo 06-08hr  (3492) embryo 08-10hr  (3682) embryo 10-12hr  (3883) embryo 12-14hr  (2901) embryo 14-16hr  (1307) embryo 16-18hr  (1978) embryo 18-20hr  (1832) embryo 20-22hr  (2747) embryo 22-24hr  (2673) larva L1  (3599) larva L2  (4487) larva L3 12hr old  (3072) larva L3 puffstage 1-2  (2203) larva L3 puffstage 3-6  (2551) larva L3 puffstage 7-9  (3815) white prepupae new  (4328) white prepupae 12hr  (3396) white prepupae 24hr  (4152) pupae 2d postWPP  (4715) pupae 3d postWPP  (3488) pupae 4d postWPP  (1772) adult male 01day  (3162) adult male 05day  (3679) adult male 30day  (2366) adult female 01day  (2052) adult female 05day  (5255) adult female 30day  (4925) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (4794) embryo 02-04hr  1771 embryo 04-06hr  (3677) embryo 06-08hr  (3492) embryo 08-10hr  (3682) embryo 10-12hr  (3883) embryo 12-14hr  (2901) embryo 14-16hr    1307 embryo 16-18hr  1978 embryo 18-20hr  1832 embryo 20-22hr  (2747) embryo 22-24hr  (2673) larva L1  (3599) larva L2  (4487) larva L3 12hr old  (3072) larva L3 puffstage 1-2  2203 larva L3 puffstage 3-6  (2551) larva L3 puffstage 7-9  (3815) white prepupae new  (4328) white prepupae 12hr  (3396) white prepupae 24hr  (4152) pupae 2d postWPP  (4715) pupae 3d postWPP  (3488) pupae 4d postWPP  1772 adult male 01day  (3162) adult male 05day  (3679) adult male 30day  2366 adult female 01day  2052 adult female 05day  (5255) adult female 30day  (4925) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4794 embryo 02-04hr    1771 embryo 04-06hr    3677 embryo 06-08hr    3492 embryo 08-10hr    3682 embryo 10-12hr    3883 embryo 12-14hr    2901 embryo 14-16hr    1307 embryo 16-18hr    1978 embryo 18-20hr    1832 embryo 20-22hr    2747 embryo 22-24hr    2673 larva L1    3599 larva L2    4487 larva L3 12hr old    3072 larva L3 puffstage 1-2    2203 larva L3 puffstage 3-6    2551 larva L3 puffstage 7-9    3815 white prepupae new    4328 white prepupae 12hr    3396 white prepupae 24hr    4152 pupae 2d postWPP    4715 pupae 3d postWPP    3488 pupae 4d postWPP    1772 adult male 01day    3162 adult male 05day    3679 adult male 30day    2366 adult female 01day    2052 adult female 05day    5255 adult female 30day    4925 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0038196    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0038196 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult female reproductive system, adult male reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0038196 expression level Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (675.375) Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland  (822.5) Larval Trachea  (571.15) Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca  (579.2) Adult InseminatedFemale Spermatheca  (678.1) Adult Ovary  (962.4) Adult Testis  (948.8) Adult Male Accessory Gland  (562.8) Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0038196 expression level Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland  (822.5) Larval Trachea  571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca  579.2 Adult InseminatedFemale Spermatheca  678.1 Adult Ovary  (962.4) Adult Testis  (948.8) Adult Male Accessory Gland  562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    675.375 Larval Midgut    256.7 Larval Hindgut    392.4 Larval Malpighian Tubules    351.1 Larval Fat Body    441.6 Larval Salivary Gland    822.5 Larval Trachea    571.15 Larval Carcass    448.5 Adult Head    217 Adult Eye    130.375 Adult Brain    144.6 Adult Thoracic-Abdominal Ganglion    189.6 Adult Crop    344.2 Adult Midgut    314.8 Adult Hindgut    187.1 Adult Malpighian Tubules    189.7 Adult Fat Body    429.2 Adult Salivary Gland    200.5 Adult Heart    308.725 Adult VirginFemale Spermatheca    579.2 Adult InseminatedFemale Spermatheca    678.1 Adult Ovary    962.4 Adult Testis    948.8 Adult Male Accessory Gland    562.8 Adult Carcass    273.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    217   NA  Eye    130.375   NA  Brain    144.6   675.375  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    189.6   NA  Crop    344.2   256.7  Midgut    314.8   392.4  Hindgut    187.1   351.1  Malpighian Tubules    189.7   441.6  Fat Body    429.2   822.5  Salivary Gland    200.5   NA  Heart    308.725   571.15  Trachea    NA   NA  VirginFemale Spermatheca    579.2   NA  InseminatedFemale Spermatheca    678.1   NA  Ovary    962.4   NA  Testis    948.8   NA  Male Accessory Gland    562.8   448.5  Carcass    273.7 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038196 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9922-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG9922GD12573 Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG9922 Class Mutagen Stocks Known lesion CG9922f01835 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9922 Class Mutagen Stocks Known lesion CG9922GD12573 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9922KK108952 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel7359 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD12573} NA P{KK108952} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG9922f01835 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9922 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 66785 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038196 DroID - A comprehensive database of gene and protein interactions. • FBgn0038196 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41708
Orthologs
Genome-wide drosophilid orthologs	Dana\GF18795 Dere\GG21566 Dgri\GH18410 Dmoj\GI10786 Dper\GL23316 Dpse\GA22126 Dsec\GM25892 Dsim\GD20462 Dvir\GJ14384 Dwil\GK22479 Dyak\GE10068
Curated drosophilid orthologs	Dpse\GA22126
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AGAP004606-PA Anopheles gambiae (mosquito) XP_624932.1 Apis mellifera (honey bee) XP_001947497.1 Acyrthosiphon pisum (pea aphid) XP_001949435.1 Acyrthosiphon pisum (pea aphid) At3g06610.1 Arabidopsis thaliana (wall cress) 272794 Branchiostoma floridae (lancelet) 279446 Branchiostoma floridae (lancelet) XP_001898632.1 Brugia malayi (roundworm nematode) BGIBMGA012474-PA Bombyx mori (silk worm) ENSBTAP00000022876 Bos taurus (bovine) CN16635 Caenorhabditis brenneri (small nematode) CBP17318 Caenorhabditis briggsae (nematode) CE17660 Caenorhabditis elegans (worm) ENSCAFP00000019727 Canis familiaris (dog) JA03520 Caenorhabditis japonica (nematode) CMP291C Cyanidioschyzon merolae (red alga) CPIJ008278 Culex pipens (mosquito) ENSCPOP00000001970 Cavia porcellus (guinea pig) RP37053 Caenorhabditis remanei (nematode) ENSCSAVP00000018951 Ciona savignyi (sedentary tunicate) 167406 Capitella spl (polychaete worm) 304277 Daphnia pulex (daphnia) ENSDARP00000077781 Danio rerio (zebra fish) ENSECAP00000006925 Equus caballus (horse) ENSGACP00000023024 Gymnopilus aculeatus (mushroom) 67931 Hypsipyla robusta (cedar shoot borer) ENSP00000386290 Homo sapiens (human) 118654 Lottia gigantea (owl limpet) ENSMODP00000019389 Monodelphis domestica (gray opossum) ENSMMUP00000029976 Macaca mulatta (rhesus monkey) ENSMUSP00000106242 Mus musculus (house mouse) 89885 Nematostella vectensis (starlet anemone) XP_001604022.1 Nasonia vitripennis (wasp) ENSORLP00000024792 Oryzias latipes (japanese killifish) LOC_Os03g61680.1 Oryza sativa (asian rice) PHUM008436-PA Pediculus humanus (human body louse) 196224 Physcomitrella patens (moss) ENSPPYP00000007280 Pongo pygmaeus (orangutan) 95453 Phytophthora ramorum (sudden oak death pathogen) 132789 Phytophthora sojae (root rot pathogen) 822212 Populus trichocarpa (black cottonwood) ENSPTRP00000011968 Pan troglodytes (chimpanzee) ENSRNOP00000021091 Rattus norvegicus (norway rat) 5047788 Sorghum bicolor (sorghum) Smp_054560 Schistosoma mansoni (trematode parasite) XP_001179186.1 Strongylocentrotus purpuratus (purple sea urchin) 23390 Trichoplax adhaerens (metazoa) XP_974638.1 Tribolium castaneum (red flour beetle) ENSTNIP00000021961 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000036921 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000033788 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12077 NV15500 LH12049 FBgn0227950 FBgn0224456 FBgn0201597 FBgn0191933 FBgn0180748 JGI_V11_304277 FBgn0082106 FBgn0160906 FBgn0133549 FBgn0125878 FBgn0113744 FBgn0095812 CPIJ008278 BGIBMGA012474 ACYPI004139 ACYPI001568 GB15343 AGAP004606 PHUM306680 GLEAN_03305
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	18479 w1118; PBac{WH}CG9922f01835/TM6B, Tb1
Harvard	- PBac{WH}CG9922f01835
VDRC	v105294 P{KK108952}VIE-260B v35465 w1118; P{GD12573}v35465 v35467 w1118; P{GD12573}v35467
Genomic Clones ( 1 )
	BACR10E03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 13 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE55111
Other clones	DPiM_RE55111
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE68586 SD16289
Other clones	57977 214321.29 bs02b07 bs28g09 bs40h06 EP04446 FGA009F10 FGH108F02 FGM319E07
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038196 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41708
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9922 BcDNA:RE55111 (FlyBase, 1996-) Source for merge of: CG9922 NEST:bs28g09 (Rana, 2004.7.8)
Additional comments	Source for merge of CG9922 BcDNA:RE55111 was TrEMBL update (date:020807). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142072 RefSeq (Proteins) • NP_650329 DDBJ / EMBL / GenBank • AAF55011 AAL49103 AI944575 AI946617 AY071481 BI369030 Entrez Gene - A searchable database of RefSeq genes. • 41708 UniProtKB/TrEMBL • Q9VFN9
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 66785 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038196 DroID - A comprehensive database of gene and protein interactions. • FBgn0038196 DRSC - Results from RNAi screens. • FBgn0038196 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038196 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9922-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038196 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 41708 InParanoid A subset of ortholog calls from InParanoid. • AGAP004606-PA Anopheles gambiae (mosquito) XP_624932.1 Apis mellifera (honey bee) XP_001947497.1 Acyrthosiphon pisum (pea aphid) XP_001949435.1 Acyrthosiphon pisum (pea aphid) At3g06610.1 Arabidopsis thaliana (wall cress) 272794 Branchiostoma floridae (lancelet) 279446 Branchiostoma floridae (lancelet) XP_001898632.1 Brugia malayi (roundworm nematode) BGIBMGA012474-PA Bombyx mori (silk worm) ENSBTAP00000022876 Bos taurus (bovine) CN16635 Caenorhabditis brenneri (small nematode) CBP17318 Caenorhabditis briggsae (nematode) CE17660 Caenorhabditis elegans (worm) ENSCAFP00000019727 Canis familiaris (dog) JA03520 Caenorhabditis japonica (nematode) CMP291C Cyanidioschyzon merolae (red alga) CPIJ008278 Culex pipens (mosquito) ENSCPOP00000001970 Cavia porcellus (guinea pig) RP37053 Caenorhabditis remanei (nematode) ENSCSAVP00000018951 Ciona savignyi (sedentary tunicate) 167406 Capitella spl (polychaete worm) 304277 Daphnia pulex (daphnia) ENSDARP00000077781 Danio rerio (zebra fish) ENSECAP00000006925 Equus caballus (horse) ENSGACP00000023024 Gymnopilus aculeatus (mushroom) 67931 Hypsipyla robusta (cedar shoot borer) ENSP00000386290 Homo sapiens (human) 118654 Lottia gigantea (owl limpet) ENSMODP00000019389 Monodelphis domestica (gray opossum) ENSMMUP00000029976 Macaca mulatta (rhesus monkey) ENSMUSP00000106242 Mus musculus (house mouse) 89885 Nematostella vectensis (starlet anemone) XP_001604022.1 Nasonia vitripennis (wasp) ENSORLP00000024792 Oryzias latipes (japanese killifish) LOC_Os03g61680.1 Oryza sativa (asian rice) PHUM008436-PA Pediculus humanus (human body louse) 196224 Physcomitrella patens (moss) ENSPPYP00000007280 Pongo pygmaeus (orangutan) 95453 Phytophthora ramorum (sudden oak death pathogen) 132789 Phytophthora sojae (root rot pathogen) 822212 Populus trichocarpa (black cottonwood) ENSPTRP00000011968 Pan troglodytes (chimpanzee) ENSRNOP00000021091 Rattus norvegicus (norway rat) 5047788 Sorghum bicolor (sorghum) Smp_054560 Schistosoma mansoni (trematode parasite) XP_001179186.1 Strongylocentrotus purpuratus (purple sea urchin) 23390 Trichoplax adhaerens (metazoa) XP_974638.1 Tribolium castaneum (red flour beetle) ENSTNIP00000021961 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000036921 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000033788 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 41708 modMine - Data generated by the modENCODE project. • FBgn0038196 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12077 NV15500 LH12049 FBgn0227950 FBgn0224456 FBgn0201597 FBgn0191933 FBgn0180748 JGI_V11_304277 FBgn0082106 FBgn0160906 FBgn0133549 FBgn0125878 FBgn0113744 FBgn0095812 CPIJ008278 BGIBMGA012474 ACYPI004139 ACYPI001568 GB15343 AGAP004606 PHUM306680 GLEAN_03305
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	BcDNA:RE55111   CG9922 (Keleman et al., 2009.8.5, Saj et al., 2010, Adryan et al., 2007) NEST:bs28g09
Name Synonym
Secondary FlyBase IDs
	FBgn0045152 FBgn0047091
References ( 14 )
Research paper	Blanco et al., 2010, BMC Dev. Biol. 10: 94 Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812] Saj et al., 2010, Dev. Cell 18(5): 862--876 A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network. [FBrf0210834] Adryan et al., 2007, Genome Biol. 8(8): R167 Genomic mapping of Suppressor of Hairy-wing binding sites in Drosophila. [FBrf0205349]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Rana, 2004.7.8, BLAST analysis. BLAST analysis. [FBrf0178762] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]