FB2019_05, released Oct 15, 2019

Gene: Dmel\CG6654

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General Information
Symbol
Dmel\CG6654
Species
D. melanogaster
Name
Annotation Symbol
CG6654
Feature Type
protein_coding_gene
FlyBase ID
FBgn0038301
Gene Model Status
Current
Stock Availability
4 publicly available
Gene Snapshot
In progress.Contributions welcome.
Other Summaries
Key Links
Genomic Location
Cytogenetic map
88E3-88E3
Sequence location
3R:15,211,277..15,213,658 [-]
Recombination map
3-56
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Molecular Function (GO)
[Detailed GO annotations]
Experimental Evidence
-
Predictions / Assertions
DNA binding; zinc ion binding
Summaries
Gene Group (FlyBase)
C2H2 ZINC FINGER TRANSCRIPTION FACTORS -
Zinc finger C2H2 transcription factors are sequence-specific DNA binding proteins that regulate transcription. They possess DNA-binding domains that are formed from repeated Cys2His2 zinc finger motifs. (Adapted from PMID:1835093, FBrf0220103 and FBrf0155739).
Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the GBrowse view of Dmel\CG6654 or the JBrowse view of Dmel\CG6654 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model
Gene model reviewed during 5.40
Gene model reviewed during 5.48
Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
CG6654-RA
FBtr0083139
NM_142172
2262
639
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
CG6654-PA
FBpp0082593
71.9
639
7.36
NP_650429
AAF55141
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CG6654 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Gene Ontology (3 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
DNA binding
inferred from electronic annotation with InterPro:IPR016177
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
zinc ion binding
inferred from electronic annotation with InterPro:IPR012934
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Biological Process (0 terms)
There is no information supporting a Biological Process term for this gene. (Based on a review of available data on: 2017-10-10 )
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (0 terms)
Cellular Component (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
nucleus
inferred from electronic annotation with InterPro:IPR012934
(assigned by InterPro )
(FlyBase Curators et al., 2004-)
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\CG6654 in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 1-3
  • Stages(s) 4-6
  • Stages(s) 7-8
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 0 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of CG6654
Transgenic constructs containing regulatory region of CG6654
Deletions and Duplications ( 0 )
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Phenotype manifest in
Allele
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v7.1)
Homo sapiens (Human) (56)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\FEZF1
1 of 15
Yes
No
Hsap\GZF1
1 of 15
Yes
Yes
Hsap\HIC2
1 of 15
Yes
Yes
Hsap\INSM1
1 of 15
Yes
No
Hsap\INSM2
1 of 15
Yes
No
Hsap\MYNN
1 of 15
Yes
No
Hsap\ZBTB3
1 of 15
Yes
Yes
Hsap\ZBTB5
1 of 15
Yes
Yes
Hsap\ZBTB6
1 of 15
Yes
Yes
Hsap\ZBTB12
1 of 15
Yes
No
Hsap\ZBTB14
1 of 15
Yes
Yes
Hsap\ZBTB18
1 of 15
Yes
Yes
Hsap\ZBTB22
1 of 15
Yes
Yes
Hsap\ZBTB24
1 of 15
Yes
No
 
Hsap\ZBTB26
1 of 15
Yes
Yes
Hsap\ZBTB32
1 of 15
Yes
Yes
Hsap\ZBTB33
1 of 15
Yes
Yes
Hsap\ZBTB34
1 of 15
Yes
Yes
Hsap\ZBTB37
1 of 15
Yes
No
Hsap\ZBTB38
1 of 15
Yes
No
Hsap\ZBTB39
1 of 15
Yes
Yes
Hsap\ZBTB41
1 of 15
Yes
Yes
Hsap\ZBTB42
1 of 15
Yes
Yes
Hsap\ZBTB43
1 of 15
Yes
Yes
Hsap\ZBTB45
1 of 15
Yes
Yes
Hsap\ZBTB48
1 of 15
Yes
Yes
Hsap\ZFAT
1 of 15
Yes
Yes
Hsap\ZNF7
1 of 15
Yes
Yes
Hsap\ZNF131
1 of 15
Yes
Yes
Hsap\ZNF134
1 of 15
Yes
Yes
Hsap\ZNF212
1 of 15
Yes
Yes
Hsap\ZNF223
1 of 15
Yes
Yes
Hsap\ZNF236
1 of 15
Yes
No
Hsap\ZNF263
1 of 15
Yes
Yes
Hsap\ZNF282
1 of 15
Yes
Yes
Hsap\ZNF354B
1 of 15
Yes
No
Hsap\ZNF398
1 of 15
Yes
Yes
Hsap\ZNF445
1 of 15
Yes
Yes
Hsap\ZNF471
1 of 15
Yes
Yes
Hsap\ZNF493
1 of 15
Yes
Yes
Hsap\ZNF517
1 of 15
Yes
Yes
Hsap\ZNF571
1 of 15
Yes
Yes
Hsap\ZNF584
1 of 15
Yes
Yes
Hsap\ZNF621
1 of 15
Yes
Yes
Hsap\ZNF665
1 of 15
Yes
Yes
Hsap\ZNF668
1 of 15
Yes
Yes
Hsap\ZNF679
1 of 15
Yes
Yes
Hsap\ZNF696
1 of 15
Yes
Yes
Hsap\ZNF746
1 of 15
Yes
Yes
Hsap\ZNF777
1 of 15
Yes
Yes
Hsap\ZNF783
1 of 15
Yes
Yes
Hsap\ZNF785
1 of 15
Yes
Yes
Hsap\ZNF829
1 of 15
Yes
Yes
Hsap\ZNF844
1 of 15
Yes
Yes
Hsap\ZNF846
1 of 15
Yes
Yes
Hsap\ZSCAN32
1 of 15
Yes
Yes
Model Organism Orthologs (via DIOPT v7.1)
Mus musculus (laboratory mouse) (37)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Fezf1
1 of 15
Yes
No
 
Mmus\Gzf1
1 of 15
Yes
Yes
Mmus\Hic2
1 of 15
Yes
Yes
Mmus\Insm1
1 of 15
Yes
No
Mmus\Insm2
1 of 15
Yes
No
Mmus\Mynn
1 of 15
Yes
No
Mmus\Mzf1
1 of 15
Yes
No
Mmus\Plagl1
1 of 15
Yes
Yes
Mmus\Zbtb2
1 of 15
Yes
Yes
Mmus\Zbtb6
1 of 15
Yes
Yes
Mmus\Zbtb9
1 of 15
Yes
Yes
Mmus\Zbtb12
1 of 15
Yes
Yes
Mmus\Zbtb14
1 of 15
Yes
Yes
Mmus\Zbtb18
1 of 15
Yes
Yes
Mmus\Zbtb22
1 of 15
Yes
Yes
Mmus\Zbtb26
1 of 15
Yes
Yes
Mmus\Zbtb32
1 of 15
Yes
Yes
Mmus\Zbtb33
1 of 15
Yes
Yes
Mmus\Zbtb34
1 of 15
Yes
Yes
Mmus\Zbtb37
1 of 15
Yes
No
Mmus\Zbtb38
1 of 15
Yes
No
Mmus\Zbtb39
1 of 15
Yes
Yes
Mmus\Zbtb42
1 of 15
Yes
Yes
Mmus\Zbtb43
1 of 15
Yes
Yes
Mmus\Zbtb45
1 of 15
Yes
Yes
Mmus\Zfp114
1 of 15
Yes
No
Mmus\Zfp282
1 of 15
Yes
Yes
Mmus\Zfp354c
1 of 15
Yes
Yes
Mmus\Zfp651
1 of 15
Yes
Yes
Mmus\Zfp661
1 of 15
Yes
Yes
Mmus\Zfp746
1 of 15
Yes
Yes
Mmus\Zfp777
1 of 15
Yes
Yes
Mmus\Zfp790
1 of 15
Yes
Yes
Mmus\Zfp791
1 of 15
Yes
Yes
Mmus\Zfp865
1 of 15
Yes
Yes
Mmus\Zfp872
1 of 15
Yes
No
Mmus\Zkscan4
1 of 15
Yes
Yes
Rattus norvegicus (Norway rat) (35)
Rnor\Fezf1
1 of 13
Yes
No
Rnor\Gzf1
1 of 13
Yes
Yes
Rnor\Hic2
1 of 13
Yes
Yes
Rnor\Insm2
1 of 13
Yes
No
Rnor\LOC100910807
1 of 13
Yes
Yes
Rnor\LOC102554913
1 of 13
Yes
Yes
Rnor\Zbtb2
1 of 13
Yes
Yes
Rnor\Zbtb6
1 of 13
Yes
Yes
Rnor\Zbtb9
1 of 13
Yes
Yes
Rnor\Zbtb12
1 of 13
Yes
Yes
Rnor\Zbtb18
1 of 13
Yes
Yes
Rnor\Zbtb22
1 of 13
Yes
Yes
Rnor\Zbtb26
1 of 13
Yes
Yes
Rnor\Zbtb34
1 of 13
Yes
Yes
Rnor\Zbtb37
1 of 13
Yes
Yes
Rnor\Zbtb38
1 of 13
Yes
No
Rnor\Zbtb39
1 of 13
Yes
Yes
Rnor\Zbtb42
1 of 13
Yes
Yes
Rnor\Zbtb43
1 of 13
Yes
Yes
Rnor\Zbtb45
1 of 13
Yes
Yes
Rnor\Zbtb48
1 of 13
Yes
Yes
Rnor\Zfat
1 of 13
Yes
Yes
Rnor\Zfp78
1 of 13
Yes
Yes
Rnor\Zfp161
1 of 13
Yes
Yes
Rnor\Zfp282
1 of 13
Yes
Yes
Rnor\Zfp354c
1 of 13
Yes
Yes
Rnor\Zfp483
1 of 13
Yes
Yes
Rnor\Zfp532
1 of 13
Yes
Yes
Rnor\Zfp574
1 of 13
Yes
Yes
Rnor\Zfp612
1 of 13
Yes
No
Rnor\Zfp689
1 of 13
Yes
Yes
Rnor\Zfp777
1 of 13
Yes
Yes
Rnor\Zfp867
1 of 13
Yes
No
Rnor\Zscan22
1 of 13
Yes
Yes
Rnor\Zscan25
1 of 13
Yes
Yes
Xenopus tropicalis (Western clawed frog) (13)
Xtro\e4f1
1 of 12
Yes
Yes
Xtro\gzf1
1 of 12
Yes
Yes
Xtro\hic1
1 of 12
Yes
Yes
Xtro\hic2
1 of 12
Yes
Yes
Xtro\insm2
1 of 12
Yes
No
Xtro\zbtb7c
1 of 12
Yes
Yes
Xtro\zbtb9
1 of 12
Yes
Yes
Xtro\zbtb14
1 of 12
Yes
Yes
Xtro\zbtb26
1 of 12
Yes
Yes
Xtro\zbtb34
1 of 12
Yes
Yes
Xtro\zbtb37
1 of 12
Yes
Yes
Xtro\zbtb43
1 of 12
Yes
Yes
Xtro\znf238.2
1 of 12
Yes
Yes
Danio rerio (Zebrafish) (22)
Drer\bcl6a
1 of 15
Yes
No
Drer\fezf1
1 of 15
Yes
No
Drer\hic1l
1 of 15
Yes
Yes
Drer\hic2
1 of 15
Yes
Yes
Drer\insm1a
1 of 15
Yes
No
Drer\insm1b
1 of 15
Yes
No
Drer\si:ch73-299h12.2
1 of 15
Yes
Yes
Drer\si:ch211-236k19.4
1 of 15
Yes
Yes
Drer\zbtb8a
1 of 15
Yes
Yes
Drer\zbtb12.1
1 of 15
Yes
Yes
Drer\zbtb12.2
1 of 15
Yes
Yes
Drer\zbtb14
1 of 15
Yes
Yes
Drer\zbtb20
1 of 15
Yes
Yes
Drer\zbtb21
1 of 15
Yes
Yes
Drer\zbtb22a
1 of 15
Yes
Yes
Drer\zbtb22b
1 of 15
Yes
Yes
Drer\zbtb34
1 of 15
Yes
Yes
Drer\zbtb37
1 of 15
Yes
Yes
Drer\zbtb43
1 of 15
Yes
Yes
Drer\zbtb48
1 of 15
Yes
No
Drer\zgc:76872
1 of 15
Yes
Yes
Drer\zgc:163077
1 of 15
Yes
Yes
Caenorhabditis elegans (Nematode, roundworm) (8)
Cele\fezf-1
2 of 15
Yes
No
Cele\hinf-1
1 of 15
No
No
Cele\klf-3
1 of 15
No
No
Cele\lsl-1
1 of 15
No
Yes
Cele\M03D4.4
1 of 15
No
Yes
Cele\Y55F3AM.14
1 of 15
No
No
Cele\Y111B2A.10
1 of 15
No
Yes
Cele\ztf-23
1 of 15
No
Yes
Arabidopsis thaliana (thale-cress) (2)
Atha\AT3G29340
1 of 9
Yes
No
Atha\TFIIIA
1 of 9
Yes
No
Saccharomyces cerevisiae (Brewer's yeast) (1)
Scer\AZF1
1 of 15
Yes
No
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\ace2
1 of 12
Yes
Yes
Orthologs in Drosophila Species (via OrthoDB v9.1) ( EOG091906QK )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly
Dmel\CG6654
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00009993
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00009997
Drosophila simulans
Dsim\GD20376
Drosophila sechellia
Dsec\GM25799
Drosophila erecta
Dere\GG20836
Drosophila yakuba
Dyak\GE26404
Drosophila ananassae
Dana\GF17156
Drosophila pseudoobscura pseudoobscura
Dpse\GA19755
Drosophila persimilis
Dper\GL21685
Drosophila willistoni
Dwil\GK28331
Drosophila virilis
Dvir\GJ10213
Drosophila mojavensis
Dmoj\GI10361
Drosophila grimshawi
Dgri\GH18613
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091501GF )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17021978
Glossina morsitans
Tsetse fly
Gmor\GMOY005130
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_10120
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0BPD )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA003260
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0BN0 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR000852
Strigamia maritima
European centipede
Smar\SMAR000634
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G02KC )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z434
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z265
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z146
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_021686gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Rt19
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z330
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z403
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z475
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z398
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z437
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z114
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Spz12_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z423
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z420
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z416
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z192
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Unk_50
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z479
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Zfp509L
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z417_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z317
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Prdm9
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z52
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z27
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z427
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z378
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z379
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z66
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z200
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z431
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z158
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z339
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z359
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z443
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Unk_48
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z331
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z282
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z481
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z337
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z445
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z440
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z83
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z61
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Spz12
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z139
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z352
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z347
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z307
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z457
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z23
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_021634gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Prdm7
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z124
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z472
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z314
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z484
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z458
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z371
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z288
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z135
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z491
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z338
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z79
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z480_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z70
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z412
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_013902gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z300
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_016789gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z295
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z200_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z392
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z347_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z159
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z36
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z347_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z464
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z136
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Unk_49
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z56
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z379_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z122
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z327
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z356
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z411
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z316
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z14
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z422
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z417
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z346
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z308
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z444
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z76
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Z460
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000003072
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000000609
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000024509
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000005713
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000020618
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000001021
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000022017
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000024222
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000000034
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000018801
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000020535
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000003470
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000020664
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000014980
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000021732
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000005006
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000021875
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000023719
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000020018
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000004359
Gallus gallus
Domestic chicken
Ggal\LOC777158
Gallus gallus
Domestic chicken
Ggal\ZNF250
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027978
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027267
Gallus gallus
Domestic chicken
Ggal\ZFP92
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000014558
Gallus gallus
Domestic chicken
Ggal\ZBTB17
Gallus gallus
Domestic chicken
Ggal\ZBTB48
Gallus gallus
Domestic chicken
Ggal\PRDM15
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000028293
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000029178
Gallus gallus
Domestic chicken
Ggal\MRPL50
Gallus gallus
Domestic chicken
Ggal\ZNF319
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027509
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000001212
Gallus gallus
Domestic chicken
Ggal\Gga.18103
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000026664
Gallus gallus
Domestic chicken
Ggal\LOC100859488
Gallus gallus
Domestic chicken
Ggal\LOC429800
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000026587
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000010880
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027546
Gallus gallus
Domestic chicken
Ggal\ZFP3
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000018597
Gallus gallus
Domestic chicken
Ggal\LOC768645
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000005661
Gallus gallus
Domestic chicken
Ggal\ZBTB24
Gallus gallus
Domestic chicken
Ggal\MYNN
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000028129
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000000915
Gallus gallus
Domestic chicken
Ggal\LOC100859034
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000026350
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027097
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000028367
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027204
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000013355
Gallus gallus
Domestic chicken
Ggal\ZBTB11
Gallus gallus
Domestic chicken
Ggal\Gga.49772
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000018772
Gallus gallus
Domestic chicken
Ggal\GZF1
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000022295
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000022172
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000027646
Gallus gallus
Domestic chicken
Ggal\ZBTB41
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000026774
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v7.1)
Drosophila melanogaster (Fruit fly) (58)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
CG2202
2 of 10
CG11247
2 of 10
CG11696
2 of 10
CG15436
2 of 10
CG17359
2 of 10
CG17568
2 of 10
CG17612
2 of 10
CG31388
2 of 10
Zif
2 of 10
CG1792
1 of 10
CG2129
1 of 10
CG3407
1 of 10
CG4318
1 of 10
CG4424
1 of 10
CG4854
1 of 10
CG4936
1 of 10
CG5245
1 of 10
CG6813
1 of 10
CG7963
1 of 10
CG8159
1 of 10
CG8301
1 of 10
CG8319
1 of 10
CG8944
1 of 10
CG9215
1 of 10
CG10147
1 of 10
CG10321
1 of 10
CG10631
1 of 10
CG11695
1 of 10
CG11902
1 of 10
CG12391
1 of 10
CG14655
1 of 10
CG14667
1 of 10
CG14710
1 of 10
CG14711
1 of 10
CG17328
1 of 10
CG17802
1 of 10
CG17806
1 of 10
CG18262
1 of 10
CG18764
1 of 10
CG31365
1 of 10
CG31441
1 of 10
CG33213
1 of 10
CTCF
1 of 10
dwg
1 of 10
Kr-h1
1 of 10
Kr
1 of 10
M1BP
1 of 10
Meics
1 of 10
nom
1 of 10
Odj
1 of 10
ouib
1 of 10
pita
1 of 10
prg
1 of 10
ranshi
1 of 10
sens
1 of 10
su(Hw)
1 of 10
topi
1 of 10
trem
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Comments on Models/Modifiers Based on Experimental Evidence ( 0 )
     
    Disease Associations of Human Orthologs (via DIOPT v7.1 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    Summary of Genetic Interactions
    esyN Network Diagram
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Linkouts
    BioGRID - A database of protein and genetic interactions.
    DroID - A comprehensive database of gene and protein interactions.
    InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Pathways
    Gene Group - Pathway Membership (FlyBase)
    External Data
    Linkouts
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    3R
    Recombination map
    3-56
    Cytogenetic map
    88E3-88E3
    Sequence location
    3R:15,211,277..15,213,658 [-]
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    88E3-88E3
    Limits computationally determined from genome sequence between P{EP}CG33967EP666 and P{lacW}Hsc70-4L3929
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location
    3-56
    (FlyBase, 2016)
    3-55.8
    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (4)
    Genomic Clones (13)
     

    Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

    cDNA Clones (16)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequences
    BDGP DGC clones
    Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    Antibody Information
    Laboratory Generated Antibodies
     
    Commercially Available Antibodies
     
    Other Information
    Relationship to Other Genes
    Source for database identify of
    Source for database merge of
    Additional comments
    Other Comments
    Origin and Etymology
    Discoverer
    Etymology
    Identification
    External Crossreferences and Linkouts ( 30 )
    Sequence Crossreferences
    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
    GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
    RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
    UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
    Other crossreferences
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    InterPro - A database of protein families, domains and functional sites
    KEGG Genes - Molecular building blocks of life in the genomic space.
    modMine - A data warehouse for the modENCODE project
    Linkouts
    BioGRID - A database of protein and genetic interactions.
    DPiM - Drosophila Protein interaction map
    DroID - A comprehensive database of gene and protein interactions.
    DRSC - Results frm RNAi screens
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyMine - An integrated database for Drosophila genomics
    InterologFinder - Protein-protein interactions (PPI) from both known and predicted PPI data sets.
    MIST (protein-protein) - An integrated Molecular Interaction Database
    Synonyms and Secondary IDs (1)
    Reported As
    Symbol Synonym
    CG6654
    (Shokri et al., 2019, Bischof et al., 2018, Hu et al., 2017.6.13, Schertel et al., 2015, Keleman et al., 2009.8.5, Perkins et al., 2009)
    Name Synonyms
    Secondary FlyBase IDs
      Datasets (0)
      Study focus (0)
      Experimental Role
      Project
      Project Type
      Title
      References (23)