FlyBase Gene Report: Dmel\CG6654

General Information

Symbol

Dmel\CG6654

Species

D. melanogaster

Name

Annotation Symbol

CG6654

Feature Type

protein_coding_gene

FlyBase ID

FBgn0038301

Gene Model Status

Current

Stock Availability

6 publicly available

Gene Summary

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

88E3-88E3

Sequence location

3R:15,211,277..15,213,658 [-]

Recombination map

3-56

RefSeq locus

NT_033777 REGION:15211277..15213658

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (5 terms)

Molecular Function (3 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

enables DNA-binding transcription factor activity

inferred from biological aspect of ancestor with PANTHER:PTN002811104

(assigned by GO_Central )

(Gaudet et al., 2011)

enables RNA polymerase II cis-regulatory region sequence-specific DNA binding

inferred from biological aspect of ancestor with PANTHER:PTN002811104

(assigned by GO_Central )

(Gaudet et al., 2011)

enables zinc ion binding

inferred from electronic annotation with InterPro:IPR012934

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

Biological Process (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in regulation of transcription by RNA polymerase II

inferred from biological aspect of ancestor with PANTHER:PTN002811104

(assigned by GO_Central )

(Gaudet et al., 2011)

Cellular Component (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

located_in nucleus

inferred from electronic annotation with InterPro:IPR012934

(assigned by InterPro )

(FlyBase Curators et al., 2004-)

Gene Group (FlyBase)

C2H2 ZINC FINGER TRANSCRIPTION FACTORS

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Group (FlyBase)

C2H2 ZINC FINGER TRANSCRIPTION FACTORS -: Zinc finger C2H2 transcription factors are sequence-specific DNA binding proteins that regulate transcription. They possess DNA-binding domains that are formed from repeated Cys₂His₂ zinc finger motifs. (Adapted from PMID:1835093, FBrf0220103 and FBrf0155739).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\CG6654 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Comments on Gene Model

Gene model reviewed during 5.40

Gene model reviewed during 5.48

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

CG6654-RA

FBtr0083139

NM_142172

2262

639

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

CG6654-PA

FBpp0082593

71.9

639

7.36

NP_650429

AAF55141

Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Q9VFB9

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\CG6654 using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG6654_1

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

anlage in statu nascendi

(Fisher et al., 2012)

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

organism | faint | ubiquitous

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic brain

(Fisher et al., 2012)

embryonic/larval nervous system

(Fisher et al., 2012)

organism | faint | ubiquitous

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\CG6654 in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\CG6654

View exonic expression by tissue for Dmel\CG6654

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0038301

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

FBgn0038301

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

CG6654-RA

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG6654

Flygut - An atlas of the Drosophila adult midgut

FBgn0038301

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\CG6654

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 7-8
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 0 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 8 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of CG6654

Transgenic constructs containing regulatory region of CG6654

Aberrations (Deficiencies and Duplications) ( 0 )

Inferred from experimentation ( 0 )

Inferred from location ( 0 )

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Download All OrthoDB Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (360)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\ZNF7

2 of 15

Yes

Hsap\ZNF354B

2 of 15

Yes

Hsap\ZNF471

2 of 15

Yes

Hsap\ZNF493

2 of 15

Yes

Hsap\ZNF571

2 of 15

Yes

Hsap\ZNF665

2 of 15

Yes

Hsap\ZNF829

2 of 15

Yes

Hsap\ZNF846

2 of 15

Yes

Hsap\E4F1

1 of 15

Yes

Hsap\ERV3-1-ZNF117

1 of 15

Yes

Hsap\GTF3A

1 of 15

Hsap\GZF1

1 of 15

Yes

Hsap\HIC2

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\RBAK-RBAKDN

1 of 15

Yes

Hsap\SNAI1

1 of 15

Hsap\ZBTB3

1 of 15

Yes

Hsap\ZBTB5

1 of 15

Yes

Hsap\ZBTB6

1 of 15

Yes

Hsap\ZBTB12

1 of 15

Hsap\ZBTB14

1 of 15

Yes

Hsap\ZBTB18

1 of 15

Yes

Hsap\ZBTB22

1 of 15

Yes

Hsap\ZBTB24

1 of 15

Hsap\ZBTB26

1 of 15

Yes

Hsap\ZBTB32

1 of 15

Yes

Hsap\ZBTB33

1 of 15

Yes

Hsap\ZBTB34

1 of 15

Yes

Hsap\ZBTB37

1 of 15

Hsap\ZBTB38

1 of 15

Hsap\ZBTB39

1 of 15

Yes

Hsap\ZBTB41

1 of 15

Yes

Hsap\ZBTB42

1 of 15

Yes

Hsap\ZBTB43

1 of 15

Yes

Hsap\ZBTB45

1 of 15

Yes

Hsap\ZBTB47

1 of 15

Yes

Hsap\ZBTB48

1 of 15

Yes

Hsap\ZFAT

1 of 15

Yes

Hsap\ZFP2

1 of 15

Hsap\ZFP3

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF10

1 of 15

Hsap\ZNF12

1 of 15

Hsap\ZNF14

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF33B

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF44

1 of 15

Yes

Hsap\ZNF45

1 of 15

Hsap\ZNF57

1 of 15

Yes

Hsap\ZNF66

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF81

1 of 15

Hsap\ZNF83

1 of 15

Yes

Hsap\ZNF84

1 of 15

Hsap\ZNF85

1 of 15

Hsap\ZNF90

1 of 15

Yes

Hsap\ZNF91

1 of 15

Hsap\ZNF92

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF107

1 of 15

Hsap\ZNF112

1 of 15

Yes

Hsap\ZNF131

1 of 15

Yes

Hsap\ZNF132

1 of 15

Hsap\ZNF133

1 of 15

Hsap\ZNF134

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF154

1 of 15

Hsap\ZNF155

1 of 15

Hsap\ZNF157

1 of 15

Yes

Hsap\ZNF160

1 of 15

Hsap\ZNF169

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF214

1 of 15

Hsap\ZNF221

1 of 15

Yes

Hsap\ZNF223

1 of 15

Yes

Hsap\ZNF224

1 of 15

Yes

Hsap\ZNF225

1 of 15

Yes

Hsap\ZNF226

1 of 15

Hsap\ZNF227

1 of 15

Hsap\ZNF229

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF254

1 of 15

Hsap\ZNF256

1 of 15

Hsap\ZNF257

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF268

1 of 15

Yes

Hsap\ZNF273

1 of 15

Yes

Hsap\ZNF282

1 of 15

Yes

Hsap\ZNF283

1 of 15

Hsap\ZNF284

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF324

1 of 15

Yes

Hsap\ZNF329

1 of 15

Hsap\ZNF331

1 of 15

Yes

Hsap\ZNF333

1 of 15

Hsap\ZNF334

1 of 15

Hsap\ZNF337

1 of 15

Yes

Hsap\ZNF345

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF383

1 of 15

Hsap\ZNF398

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF431

1 of 15

Yes

Hsap\ZNF432

1 of 15

Yes

Hsap\ZNF433

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF442

1 of 15

Yes

Hsap\ZNF443

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF470

1 of 15

Hsap\ZNF473

1 of 15

Hsap\ZNF479

1 of 15

Yes

Hsap\ZNF480

1 of 15

Hsap\ZNF483

1 of 15

Hsap\ZNF484

1 of 15

Yes

Hsap\ZNF485

1 of 15

Yes

Hsap\ZNF486

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF506

1 of 15

Yes

Hsap\ZNF510

1 of 15

Yes

Hsap\ZNF513

1 of 15

Yes

Hsap\ZNF517

1 of 15

Yes

Hsap\ZNF519

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF585A

1 of 15

Hsap\ZNF585B

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF605

1 of 15

Hsap\ZNF606

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF627

1 of 15

Yes

Hsap\ZNF629

1 of 15

Yes

Hsap\ZNF630

1 of 15

Hsap\ZNF649

1 of 15

Yes

Hsap\ZNF652

1 of 15

Yes

Hsap\ZNF658B

1 of 15

Yes

Hsap\ZNF658

1 of 15

Hsap\ZNF660-ZNF197

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF680

1 of 15

Hsap\ZNF681

1 of 15

Hsap\ZNF682

1 of 15

Yes

Hsap\ZNF692

1 of 15

Yes

Hsap\ZNF695

1 of 15

Yes

Hsap\ZNF696

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF714

1 of 15

Yes

Hsap\ZNF716

1 of 15

Yes

Hsap\ZNF717

1 of 15

Hsap\ZNF718

1 of 15

Yes

Hsap\ZNF721

1 of 15

Hsap\ZNF723

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF732

1 of 15

Yes

Hsap\ZNF737

1 of 15

Hsap\ZNF746

1 of 15

Yes

Hsap\ZNF749

1 of 15

Hsap\ZNF765

1 of 15

Hsap\ZNF765-ZNF761

1 of 15

Yes

Hsap\ZNF766

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF778

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF785

1 of 15

Yes

Hsap\ZNF790

1 of 15

Hsap\ZNF791

1 of 15

Yes

Hsap\ZNF792

1 of 15

Hsap\ZNF799

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF816

1 of 15

Hsap\ZNF823

1 of 15

Yes

Hsap\ZNF835

1 of 15

Hsap\ZNF836

1 of 15

Hsap\ZNF840P

1 of 15

Yes

Hsap\ZNF841

1 of 15

Hsap\ZNF844

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZNF878

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

Hsap\ZSCAN32

1 of 15

Hsap\ZUP1

1 of 15

Yes

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (254)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Mzf1

2 of 15

Yes

Mmus\Zfp114

2 of 15

Yes

Mmus\Zfp354c

2 of 15

Yes

Mmus\Zfp651

2 of 15

Yes

Mmus\Zfp652

2 of 15

Yes

Mmus\Zfp661

2 of 15

Yes

Mmus\Zfp790

2 of 15

Yes

Mmus\Zfp791

2 of 15

Yes

Mmus\Zfp872

2 of 15

Yes

Mmus\2010315B03Rik

1 of 15

Yes

Mmus\2410141K09Rik

1 of 15

Yes

Mmus\2610008E11Rik

1 of 15

Yes

Mmus\4930522L14Rik

1 of 15

Mmus\AI854703

1 of 15

Yes

Mmus\AI987944

1 of 15

Yes

Mmus\AU041133

1 of 15

Mmus\AW146154

1 of 15

Yes

Mmus\BC024063

1 of 15

Mmus\E4f1

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Yes

1 of 15

1 of 15

1 of 15

1 of 15