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Gene Dmel\CG17556

General Information
Symbol	Dmel\CG17556	Species	D. melanogaster
Name		Annotation symbol	CG17556
Feature type	protein_coding_gene	FlyBase ID	FBgn0038462
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	89E6-89E6	Sequence location	3R:12,820,258..12,821,810 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG17556 (FBgn0038462). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Tetratricopeptide repeat-containing; Tetratricopeptide-like helical. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, adult heart, adult fat body, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval fat body, larval/adult salivary gland, larval trachea, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623943_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG17556. Gene sequence location is 3R:12820258..12821810.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 89E6-89E6   Limits computationally determined from genome sequence between P{EP}MESK4EP1015 and P{EP}CG5208EP562&P{EP}DadEP3196
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG17556 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG17556-RA FBtr0083375  NM_142324   1253   282
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG17556-PA   FBpp0082818   32.8   282   7.06     NP_650581   AAF55370
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat-containing (IPR013026)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141719   AA264307   AA440610   AA696604   AA735452   AA816886   AE014297 AAF55370   AI062153   AY070646 AAL48117   AY075510 AAL68318   BF503280   BI170602   BI230664   BI352178   BI356821   BI375006   BI569913   BI589669   BI617824   BI635934   BI640366   BI641071   BT100172   BT120319   CO155869   CO181929   CO188249   CO188427   EC197375   GH749528   GH758486   GH770123   GH782262   GH809070   GH811156   GH811528   GH814899   GH815256   GH827535   GH832967   GH834162   GH851059   GH868585   GH876557   GH883956   GH900775   GH906300   GH912936   GH917804   GH922906   GH925219   GH925964   GH927401   GH931638   GH933655   GH935766   GH939832
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8SXY3 Q8SZM8 Q9VEQ1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0038462    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0038462 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0038462 expression level Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2620) embryo 02-04hr  (4379) embryo 04-06hr  (1363) embryo 06-08hr  (1671) embryo 08-10hr  (2435) embryo 10-12hr  (2144) embryo 12-14hr  (1422) embryo 14-16hr  (1346) embryo 16-18hr  (1256) embryo 18-20hr  (680) embryo 20-22hr  (1296) embryo 22-24hr  (770) larva L1  (983) larva L2  (1177) larva L3 12hr old  (1139) larva L3 puffstage 1-2  (837) larva L3 puffstage 3-6  (1056) larva L3 puffstage 7-9  (1296) white prepupae new  (1288) white prepupae 12hr  (1551) white prepupae 24hr  (1297) pupae 2d postWPP  (1175) pupae 3d postWPP  (724) pupae 4d postWPP  (647) adult male 01day  (982) adult male 05day  (1946) adult male 30day  (559) adult female 01day  (873) adult female 05day  (1989) adult female 30day  (2140) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2620) embryo 02-04hr  (4379) embryo 04-06hr    1363 embryo 06-08hr  (1671) embryo 08-10hr  (2435) embryo 10-12hr  (2144) embryo 12-14hr  1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr  (1551) white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day  (1946) adult male 30day    559 adult female 01day    873 adult female 05day  (1989) adult female 30day  (2140) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0038462 expression level Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2620) embryo 02-04hr  (4379) embryo 04-06hr  (1363) embryo 06-08hr  (1671) embryo 08-10hr  (2435) embryo 10-12hr  (2144) embryo 12-14hr  (1422) embryo 14-16hr  (1346) embryo 16-18hr  (1256) embryo 18-20hr  (680) embryo 20-22hr  (1296) embryo 22-24hr  (770) larva L1  (983) larva L2  (1177) larva L3 12hr old  (1139) larva L3 puffstage 1-2  (837) larva L3 puffstage 3-6  (1056) larva L3 puffstage 7-9  (1296) white prepupae new  (1288) white prepupae 12hr  (1551) white prepupae 24hr  (1297) pupae 2d postWPP  (1175) pupae 3d postWPP  (724) pupae 4d postWPP  (647) adult male 01day  (982) adult male 05day  (1946) adult male 30day  (559) adult female 01day  (873) adult female 05day  (1989) adult female 30day  (2140) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2620) embryo 02-04hr  (4379) embryo 04-06hr    1363 embryo 06-08hr  1671 embryo 08-10hr  2435 embryo 10-12hr  2144 embryo 12-14hr  1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr  1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day  1946 adult male 30day    559 adult female 01day    873 adult female 05day  1989 adult female 30day  2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2620 embryo 02-04hr    4379 embryo 04-06hr    1363 embryo 06-08hr    1671 embryo 08-10hr    2435 embryo 10-12hr    2144 embryo 12-14hr    1422 embryo 14-16hr    1346 embryo 16-18hr    1256 embryo 18-20hr    680 embryo 20-22hr    1296 embryo 22-24hr    770 larva L1    983 larva L2    1177 larva L3 12hr old    1139 larva L3 puffstage 1-2    837 larva L3 puffstage 3-6    1056 larva L3 puffstage 7-9    1296 white prepupae new    1288 white prepupae 12hr    1551 white prepupae 24hr    1297 pupae 2d postWPP    1175 pupae 3d postWPP    724 pupae 4d postWPP    647 adult male 01day    982 adult male 05day    1946 adult male 30day    559 adult female 01day    873 adult female 05day    1989 adult female 30day    2140 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0038462    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0038462 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, adult heart, adult fat body, adult female reproductive system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, larval fat body, larval/adult salivary gland, larval trachea, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0038462 expression level Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca    1187.8 Adult InseminatedFemale Spermatheca    1180.7 Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules  514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop  532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules  (580.4) Adult Fat Body  (930.6) Adult Salivary Gland    201.6 Adult Heart  (690.2) Adult VirginFemale Spermatheca  (1187.8) Adult InseminatedFemale Spermatheca  (1180.7) Adult Ovary  (618.5) Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca  (1187.8) Adult InseminatedFemale Spermatheca  (1180.7) Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca    1187.8 Adult InseminatedFemale Spermatheca    1180.7 Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0038462 expression level Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca    1187.8 Adult InseminatedFemale Spermatheca    1180.7 Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules  514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop  532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules  580.4 Adult Fat Body  (930.6) Adult Salivary Gland    201.6 Adult Heart  690.2 Adult VirginFemale Spermatheca  (1187.8) Adult InseminatedFemale Spermatheca  (1180.7) Adult Ovary  618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca  1187.8 Adult InseminatedFemale Spermatheca  1180.7 Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    443.475 Larval Midgut    269.7 Larval Hindgut    297.1 Larval Malpighian Tubules    514.9 Larval Fat Body    348.8 Larval Salivary Gland    340.7 Larval Trachea    198.95 Larval Carcass    344.95 Adult Head    280.7 Adult Eye    220.075 Adult Brain    348.1 Adult Thoracic-Abdominal Ganglion    483.8 Adult Crop    532.2 Adult Midgut    286.8 Adult Hindgut    305 Adult Malpighian Tubules    580.4 Adult Fat Body    930.6 Adult Salivary Gland    201.6 Adult Heart    690.2 Adult VirginFemale Spermatheca    1187.8 Adult InseminatedFemale Spermatheca    1180.7 Adult Ovary    618.5 Adult Testis    256 Adult Male Accessory Gland    347.8 Adult Carcass    489.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    280.7   NA  Eye    220.075   NA  Brain    348.1   443.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    483.8   NA  Crop    532.2   269.7  Midgut    286.8   297.1  Hindgut    305   514.9  Malpighian Tubules    580.4   348.8  Fat Body    930.6   340.7  Salivary Gland    201.6   NA  Heart    690.2   198.95  Trachea    NA   NA  VirginFemale Spermatheca    1187.8   NA  InseminatedFemale Spermatheca    1180.7   NA  Ovary    618.5   NA  Testis    256   NA  Male Accessory Gland    347.8   344.95  Carcass    489.7 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038462 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17556-RA;CG17556-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG17556 Class Mutagen Stocks Known lesion CG17556KG10475 1 --
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG17556 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD9413} NA P{GD11041} NA P{GD17384} NA P{GD17694} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{SUPor-P}CG17556KG10475 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
microtubule associated complex inferred from direct assay (Hughes et al., 2008)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
binding inferred from electronic annotation with InterPro:IPR011990 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG17556 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67087 DroID - A comprehensive database of gene and protein interactions. • FBgn0038462 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42046
Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs	Dpse\GA14552
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL011813-PA Aedes aegypti (mosquito) AGAP001136-PA Anopheles gambiae (mosquito) XP_395349.1 Apis mellifera (honey bee) At5g28220.1 Arabidopsis thaliana (wall cress) 119220 Branchiostoma floridae (lancelet) XP_001892328.1 Brugia malayi (roundworm nematode) BGIBMGA013589-PA Bombyx mori (silk worm) ENSBTAP00000013197 Bos taurus (bovine) CN23960 Caenorhabditis brenneri (small nematode) CBP30373 Caenorhabditis briggsae (nematode) CE19639 Caenorhabditis elegans (worm) ENSCAFP00000001022 Canis familiaris (dog) Chro.40479 Cryptosporidium hominis (obligate parasite) ENSCINP00000007148 Ciona intestinalis (sea squirt) JA16410 Caenorhabditis japonica (nematode) cn01594 Cryptococcus neoformans (yeast-like fungus) cgd4_4200 Cryptosporidium parvum (protozoan parasite) CPIJ012308 Culex pipens (mosquito) ENSCPOP00000010407 Cavia porcellus (guinea pig) RP08610 Caenorhabditis remanei (nematode) ENSCSAVP00000005296 Ciona savignyi (sedentary tunicate) 108309 Capitella spl (polychaete worm) DDB0169127 Dictyostelium discoideum (amoeba) DEHA2G24596g Debaryomyces Hansenii (yeast) 301475 Daphnia pulex (daphnia) ENSDARP00000006378 Danio rerio (zebra fish) ENSECAP00000008336 Equus caballus (horse) ENSGACP00000007094 Gymnopilus aculeatus (mushroom) ENSGALP00000025890 Gallus gallus (chicken) 73211 Hypsipyla robusta (cedar shoot borer) ENSP00000220853 Homo sapiens (human) ISCW007306-PA Ixodes scapularis (deer tick) KLLA0E06117g Kluyveromyces lactis (yeast) 205044 Lottia gigantea (owl limpet) ENSMODP00000006099 Monodelphis domestica (gray opossum) ENSMMUP00000025307 Macaca mulatta (rhesus monkey) ENSMUSP00000022962 Mus musculus (house mouse) 110221 Nematostella vectensis (starlet anemone) XP_001603293.1 Nasonia vitripennis (wasp) ENSOANP00000002239 Ornithorynchus anatinus (platypus) ENSORLP00000025638 Oryzias latipes (japanese killifish) LOC_Os02g03470.1 Oryza sativa (asian rice) 37309 Ostreococcus tauri (green alga) PF14_0098 Plasmodium falciparum (protozoal parasite) PHUM001033-PA Pediculus humanus (human body louse) PP28860 Pristionchus pacificus (nematode) 15911 Physcomitrella patens (moss) ENSPPYP00000010286 Pongo pygmaeus (orangutan) ENSPPYP00000021116 Pongo pygmaeus (orangutan) 96479 Phytophthora ramorum (sudden oak death pathogen) 155492 Phytophthora sojae (root rot pathogen) 742055 Populus trichocarpa (black cottonwood) ENSPTRP00000035068 Pan troglodytes (chimpanzee) PVX_085950 Plasmodium vivax (protozoal parasite) ENSRNOP00000006890 Rattus norvegicus (norway rat) 4866962 Sorghum bicolor (sorghum) YJR088C Saccharomyces cerevisiae (budding yeast) Smp_172220 Schistosoma mansoni (trematode parasite) SPBC15C4.01c Schizosaccharomyces pombe (fission yeast) XP_786507.2 Strongylocentrotus purpuratus (purple sea urchin) 28044 Trichoplax adhaerens (metazoa) XP_966972.1 Tribolium castaneum (red flour beetle) Tc00.1047053506513.100 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508919.20 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000018514 Tetraodon nigroviridis (green spotted pufferfish) 32843 Thalassiosira pseudonana (marine diatom) ENSTRUP00000011151 Takifugu rubripes (pufferfish Takifugu) 288.m00019 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000007770 Xenopus tropicalis (frog) YALI0C23188g Yarrowia lipolytica (nonconventional yeast) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16769 NV14746 LH17411 ISCW007306 FBgn0243158 FBgn0243156 FBgn0214766 FBgn0197874 FBgn0191737 FBgn0191738 FBgn0178986 FBgn0176936 FBgn0170314 JGI_V11_301475 FBgn0074580 FBgn0160585 FBgn0146473 FBgn0038461 FBgn0125537 FBgn0109031 FBgn0109032 FBgn0103370 FBgn0094935 CPIJ012308 BGIBMGA013589 GB17471 AGAP001136 AAEL011813 PHUM473020 GLEAN_01201
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	15266 y1; ry506 P{SUPor-P}CG17556KG10475/TM3, Sb1 Ser1
Genomic Clones ( 1 )
	BACR03M20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 54 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH23451 LD10670 RE62710 RH03140
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT19234 GH01252 GM08003 GM18207 LD07527 LD15445 LD21339 RE12118 RE14384 RE43051 RH02113 RH48274 SD17476 SD23196 SD24183
Other clones	CK01.130D.A6 CK02706 EC17257 EK038737 EK040126 EN06906 LD20071 RP003029893 RP003031778 RP003066829 RP003077218 RP003086143 RP003103870 RP003104856 RP003106751 RP003156286 RP003160229 RP003203067 RP003251824 RP003261864 RP003295622 RP003318340 RP003322281 RP003330998 RP003346953 RP003361410 RP003382999 RP003398971 RP003404284 RP003429775 RP003477024 RP003483809 RP003516774 RP003537981 RP003636898
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038462 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42046
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142324 RefSeq (Proteins) • NP_650581 DDBJ / EMBL / GenBank • AAF55370 AAL48117 AAL68318 AY070646 AY075510 BI375006 BI589669 Entrez Gene - A searchable database of RefSeq genes. • 42046 UniProtKB/TrEMBL • Q8SXY3 Q8SZM8 Q9VEQ1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Tetratricopeptide-like helical (IPR011990) Tetratricopeptide repeat-containing (IPR013026)
Linkouts
	BioGRID - A database of protein and genetic interactions • 67087 DroID - A comprehensive database of gene and protein interactions. • FBgn0038462 DRSC - Results from RNAi screens. • FBgn0038462 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038462 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG17556-RA;CG17556-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038462 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42046 InParanoid A subset of ortholog calls from InParanoid. • AAEL011813-PA Aedes aegypti (mosquito) AGAP001136-PA Anopheles gambiae (mosquito) XP_395349.1 Apis mellifera (honey bee) At5g28220.1 Arabidopsis thaliana (wall cress) 119220 Branchiostoma floridae (lancelet) XP_001892328.1 Brugia malayi (roundworm nematode) BGIBMGA013589-PA Bombyx mori (silk worm) ENSBTAP00000013197 Bos taurus (bovine) CN23960 Caenorhabditis brenneri (small nematode) CBP30373 Caenorhabditis briggsae (nematode) CE19639 Caenorhabditis elegans (worm) ENSCAFP00000001022 Canis familiaris (dog) Chro.40479 Cryptosporidium hominis (obligate parasite) ENSCINP00000007148 Ciona intestinalis (sea squirt) JA16410 Caenorhabditis japonica (nematode) cn01594 Cryptococcus neoformans (yeast-like fungus) cgd4_4200 Cryptosporidium parvum (protozoan parasite) CPIJ012308 Culex pipens (mosquito) ENSCPOP00000010407 Cavia porcellus (guinea pig) RP08610 Caenorhabditis remanei (nematode) ENSCSAVP00000005296 Ciona savignyi (sedentary tunicate) 108309 Capitella spl (polychaete worm) DDB0169127 Dictyostelium discoideum (amoeba) DEHA2G24596g Debaryomyces Hansenii (yeast) 301475 Daphnia pulex (daphnia) ENSDARP00000006378 Danio rerio (zebra fish) ENSECAP00000008336 Equus caballus (horse) ENSGACP00000007094 Gymnopilus aculeatus (mushroom) ENSGALP00000025890 Gallus gallus (chicken) 73211 Hypsipyla robusta (cedar shoot borer) ENSP00000220853 Homo sapiens (human) ISCW007306-PA Ixodes scapularis (deer tick) KLLA0E06117g Kluyveromyces lactis (yeast) 205044 Lottia gigantea (owl limpet) ENSMODP00000006099 Monodelphis domestica (gray opossum) ENSMMUP00000025307 Macaca mulatta (rhesus monkey) ENSMUSP00000022962 Mus musculus (house mouse) 110221 Nematostella vectensis (starlet anemone) XP_001603293.1 Nasonia vitripennis (wasp) ENSOANP00000002239 Ornithorynchus anatinus (platypus) ENSORLP00000025638 Oryzias latipes (japanese killifish) LOC_Os02g03470.1 Oryza sativa (asian rice) 37309 Ostreococcus tauri (green alga) PF14_0098 Plasmodium falciparum (protozoal parasite) PHUM001033-PA Pediculus humanus (human body louse) PP28860 Pristionchus pacificus (nematode) 15911 Physcomitrella patens (moss) ENSPPYP00000010286 Pongo pygmaeus (orangutan) ENSPPYP00000021116 Pongo pygmaeus (orangutan) 96479 Phytophthora ramorum (sudden oak death pathogen) 155492 Phytophthora sojae (root rot pathogen) 742055 Populus trichocarpa (black cottonwood) ENSPTRP00000035068 Pan troglodytes (chimpanzee) PVX_085950 Plasmodium vivax (protozoal parasite) ENSRNOP00000006890 Rattus norvegicus (norway rat) 4866962 Sorghum bicolor (sorghum) YJR088C Saccharomyces cerevisiae (budding yeast) Smp_172220 Schistosoma mansoni (trematode parasite) SPBC15C4.01c Schizosaccharomyces pombe (fission yeast) XP_786507.2 Strongylocentrotus purpuratus (purple sea urchin) 28044 Trichoplax adhaerens (metazoa) XP_966972.1 Tribolium castaneum (red flour beetle) Tc00.1047053506513.100 Trypanosoma cruzi (parasitic trypanosome) Tc00.1047053508919.20 Trypanosoma cruzi (parasitic trypanosome) ENSTNIP00000018514 Tetraodon nigroviridis (green spotted pufferfish) 32843 Thalassiosira pseudonana (marine diatom) ENSTRUP00000011151 Takifugu rubripes (pufferfish Takifugu) 288.m00019 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000007770 Xenopus tropicalis (frog) YALI0C23188g Yarrowia lipolytica (nonconventional yeast) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42046 modMine - Data generated by the modENCODE project. • FBgn0038462 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB16769 NV14746 LH17411 ISCW007306 FBgn0243158 FBgn0243156 FBgn0214766 FBgn0197874 FBgn0191737 FBgn0191738 FBgn0178986 FBgn0176936 FBgn0170314 JGI_V11_301475 FBgn0074580 FBgn0160585 FBgn0146473 FBgn0038461 FBgn0125537 FBgn0109031 FBgn0109032 FBgn0103370 FBgn0094935 CPIJ012308 BGIBMGA013589 GB17471 AGAP001136 AAEL011813 PHUM473020 GLEAN_01201
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG17556 (Hollien and Weissman, 2006, Hughes et al., 2008)
Name Synonym
Secondary FlyBase IDs
References ( 10 )
Research paper	Hughes et al., 2008, PLoS Biol. 6(4): e98 A microtubule interactome: complexes with roles in cell cycle and mitosis. [FBrf0204649]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Hollien and Weissman, 2006, Science 313(5783): [FBrf0199122] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]