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Gene Dmel\CG3995

General Information
Symbol	Dmel\CG3995	Species	D. melanogaster
Name		Annotation symbol	CG3995
Feature type	protein_coding_gene	FlyBase ID	FBgn0038472
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	89E10-89E10	Sequence location	3R:12,867,618..12,868,826 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG3995 (FBgn0038472). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: DNA binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, BED-type predicted. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1628096_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG3995. Gene sequence location is 3R:12867618..12868826.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN26187 HFA15532
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 89E10-89E10   Limits computationally determined from genome sequence between P{EP}MESK4EP1015 and P{EP}CG5208EP562&P{EP}DadEP3196
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG3995 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG3995-RA FBtr0083428  NM_142334   1153   322
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG3995-PA   FBpp0082869   37.5   322   6.53     NP_650591   AAF55381
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, BED-type predicted (IPR003656)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA392429   AA539018   AE014297 AAF55381   AI109193   AI388017   AI512345   AW943703   AY122189 AAM52701   BI639463   CL705785   CO288939   CO303877   CO311761   CZ474562   EC076326   EC197049   EC236859   EV583849
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MR15 Q9VEP0
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0038472    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0038472 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0038472 expression level Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1735) embryo 02-04hr  (2205) embryo 04-06hr  (1815) embryo 06-08hr  (1804) embryo 08-10hr  (1854) embryo 10-12hr  (1459) embryo 12-14hr  (1250) embryo 14-16hr  (674) embryo 16-18hr  (768) embryo 18-20hr  (430) embryo 20-22hr  (1319) embryo 22-24hr  (1242) larva L1  (489) larva L2  (317) larva L3 12hr old  (296) larva L3 puffstage 1-2  (306) larva L3 puffstage 3-6  (470) larva L3 puffstage 7-9  (589) white prepupae new  (543) white prepupae 12hr  (902) white prepupae 24hr  (987) pupae 2d postWPP  (588) pupae 3d postWPP  (296) pupae 4d postWPP  (202) adult male 01day  (281) adult male 05day  (285) adult male 30day  (289) adult female 01day  (452) adult female 05day  (970) adult female 30day  (941) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (1735) embryo 02-04hr  (2205) embryo 04-06hr  (1815) embryo 06-08hr  (1804) embryo 08-10hr  (1854) embryo 10-12hr  1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0038472 expression level Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (1735) embryo 02-04hr  (2205) embryo 04-06hr  (1815) embryo 06-08hr  (1804) embryo 08-10hr  (1854) embryo 10-12hr  (1459) embryo 12-14hr  (1250) embryo 14-16hr  (674) embryo 16-18hr  (768) embryo 18-20hr  (430) embryo 20-22hr  (1319) embryo 22-24hr  (1242) larva L1  (489) larva L2  (317) larva L3 12hr old  (296) larva L3 puffstage 1-2  (306) larva L3 puffstage 3-6  (470) larva L3 puffstage 7-9  (589) white prepupae new  (543) white prepupae 12hr  (902) white prepupae 24hr  (987) pupae 2d postWPP  (588) pupae 3d postWPP  (296) pupae 4d postWPP  (202) adult male 01day  (281) adult male 05day  (285) adult male 30day  (289) adult female 01day  (452) adult female 05day  (970) adult female 30day  (941) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  1735 embryo 02-04hr  2205 embryo 04-06hr  1815 embryo 06-08hr  1804 embryo 08-10hr  1854 embryo 10-12hr  1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1735 embryo 02-04hr    2205 embryo 04-06hr    1815 embryo 06-08hr    1804 embryo 08-10hr    1854 embryo 10-12hr    1459 embryo 12-14hr    1250 embryo 14-16hr    674 embryo 16-18hr    768 embryo 18-20hr    430 embryo 20-22hr    1319 embryo 22-24hr    1242 larva L1    489 larva L2    317 larva L3 12hr old    296 larva L3 puffstage 1-2    306 larva L3 puffstage 3-6    470 larva L3 puffstage 7-9    589 white prepupae new    543 white prepupae 12hr    902 white prepupae 24hr    987 pupae 2d postWPP    588 pupae 3d postWPP    296 pupae 4d postWPP    202 adult male 01day    281 adult male 05day    285 adult male 30day    289 adult female 01day    452 adult female 05day    970 adult female 30day    941 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0038472    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0038472 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0038472 expression level Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0038472 expression level Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    135.85 Larval Midgut    34.9 Larval Hindgut    38 Larval Malpighian Tubules    31.2 Larval Fat Body    35.5 Larval Salivary Gland    57.8 Larval Trachea    86.15 Larval Carcass    41.35 Adult Head    42.9 Adult Eye    39.35 Adult Brain    78.4 Adult Thoracic-Abdominal Ganglion    74.7 Adult Crop    76.3 Adult Midgut    43.6 Adult Hindgut    35.5 Adult Malpighian Tubules    34.8 Adult Fat Body    48 Adult Salivary Gland no informative data Adult Heart    29.9 Adult VirginFemale Spermatheca    66.9 Adult InseminatedFemale Spermatheca    92.2 Adult Ovary    202.9 Adult Testis    31.5 Adult Male Accessory Gland    82.8 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    42.9   NA  Eye    39.35   NA  Brain    78.4   135.85  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    74.7   NA  Crop    76.3   34.9  Midgut    43.6   38  Hindgut    35.5   31.2  Malpighian Tubules    34.8   35.5  Fat Body    48   57.8  Salivary Gland    no informative data   NA  Heart    29.9   86.15  Trachea    NA   NA  VirginFemale Spermatheca    66.9   NA  InseminatedFemale Spermatheca    92.2   NA  Ovary    202.9   NA  Testis    31.5   NA  Male Accessory Gland    82.8   41.35  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_17
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038472 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3995-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG3995EY03827 viable, with Scer\GAL4pnr-MD237 CG3995GD10700 Sterility Allele fertile CG3995EY03827 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG3995 Class Mutagen Stocks Known lesion CG3995d05488 P-element activity 1 -- CG3995EY03827 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG3995 Class Mutagen Stocks Known lesion CG3995GD10700 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG3995JF02831 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel8165 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10700} NA P{TRiP.JF02831} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG3995EY03827 NA P{XP}CG3995d05488 NA miscellaneous insertions P{SUPor-P}KG10593 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
DNA binding inferred from electronic annotation with InterPro:IPR003656 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG3995 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67097 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038472 DroID - A comprehensive database of gene and protein interactions. • FBgn0038472 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42057
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17912 Dere\GG16795 Dgri\GH19556 Dmoj\GI23852 Dper\GL22988 Dpse\GA17831 Dsec\GM15390 Dsim\GD20256 Dvir\GJ10567 Dwil\GK13382 Dyak\GE26112
Curated drosophilid orthologs	Dpse\GA17831
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0243151 FBgn0215391 FBgn0197847 FBgn0191733 FBgn0170309 JGI_V11_320025 FBgn0077840 FBgn0160578 FBgn0146577 FBgn0127020 FBgn0109025 FBgn0094930 FBgn0091492 BGIBMGA012180 ACYPI55923 ACYPI54875 ACYPI37133 ACYPI31093
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	27997 y1 v1; P{TRiP.JF02831}attP2 19836 y1 w67c23; P{EPgy2}CG3995EY03827
Harvard	- P{XP}CG3995d05488
VDRC	v26068 w1118; P{GD10700}v26068 v26069 w1118; P{GD10700}v26069
Genomic Clones ( 2 )
	BACR01E04 BACR03M20 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 13 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD44187
Other clones	DPiM_LD44187
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH08315 GH18747 LD12811 LD18717 SD22042
Other clones	103163 CK01.88C.F3 Dmel_dig_019083_0717_0906 EK069722 EK226231 EK243040
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038472 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42057
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142334 RefSeq (Proteins) • NP_650591 DDBJ / EMBL / GenBank • AAF55381 AAM52701 AI512345 AW943703 AY122189 CL705785 CZ474562 Entrez Gene - A searchable database of RefSeq genes. • 42057 UniProtKB/TrEMBL • Q8MR15 Q9VEP0
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, BED-type predicted (IPR003656)
Linkouts
	BioGRID - A database of protein and genetic interactions • 67097 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038472 DroID - A comprehensive database of gene and protein interactions. • FBgn0038472 DRSC - Results from RNAi screens. • FBgn0038472 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038472 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3995-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038472 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42057 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42057 modMine - Data generated by the modENCODE project. • FBgn0038472 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0243151 FBgn0215391 FBgn0197847 FBgn0191733 FBgn0170309 JGI_V11_320025 FBgn0077840 FBgn0160578 FBgn0146577 FBgn0127020 FBgn0109025 FBgn0094930 FBgn0091492 BGIBMGA012180 ACYPI55923 ACYPI54875 ACYPI37133 ACYPI31093
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG3995 (Perkins et al., 2009)
Name Synonym
Secondary FlyBase IDs
References ( 12 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Review	Aravind, 2000, Trends Biochem. Sci. 25(9): 421--423 The BED finger, a novel DNA-binding domain in chromatin-boundary-element-binding proteins and transposases. [FBrf0132030]
Personal communication to FlyBase	Perkins et al., 2009, Update to TRiP stock collection. Update to TRiP stock collection. [FBrf0208864] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]