FB2020_06, released Dec 22, 2020

Gene: Dmel\ChT

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General Information
Symbol
Dmel\ChT
Species
D. melanogaster
Name
Choline transporter
Annotation Symbol
CG7708
Feature Type
protein_coding_gene
FlyBase ID
FBgn0038641
Gene Model Status
Current
Stock Availability
4 publicly available
Gene Snapshot
Contributions welcome
Other Summaries
Key Links
Genomic Location
Cytogenetic map
91C1-91C1
Sequence location
3R:18,680,604..18,686,739 [+]
Recombination map

3-64

RefSeq locus
NT_033777 REGION:18680604..18686739
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (8 terms)
Molecular Function (3 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
enables amino acid transmembrane transporter activity
inferred from sequence or structural similarity with FLYBASE:Eaat1; FB:FBgn0026439
(Romero-Calderon et al., 2007)
enables choline transmembrane transporter activity
inferred from sequence or structural similarity with UniProtKB:Q9GZV3
(assigned by UniProt )
(UniProt Curators, 2002-)
enables choline:sodium symporter activity
inferred from biological aspect of ancestor with PANTHER:PTN002913658
(assigned by GO_Central )
(Gaudet et al., 2011)
Biological Process (3 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (3 terms)
CV Term
Evidence
References
involved_in acetylcholine biosynthetic process
inferred from biological aspect of ancestor with PANTHER:PTN000929655
(assigned by GO_Central )
(Gaudet et al., 2011)
inferred from sequence or structural similarity with UniProtKB:Q9GZV3
(assigned by UniProt )
(UniProt Curators, 2002-)
involved_in amino acid transmembrane transport
inferred from sequence or structural similarity with FLYBASE:Eaat1; FB:FBgn0026439
(Romero-Calderon et al., 2007)
involved_in choline transport
inferred from biological aspect of ancestor with PANTHER:PTN000929655
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
located_in integral component of membrane
inferred from sequence or structural similarity with UniProtKB:Q9GZV3
(assigned by UniProt )
(UniProt Curators, 2002-)
located_in plasma membrane
inferred from biological aspect of ancestor with PANTHER:PTN002913658
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (Q9VE46)
Protein Signatures (InterPro)
Summaries
Gene Group (FlyBase)
SLC5 FAMILY OF SODIUM/GLUCOSE CO-TRANSPORTER TRANSPORTERS -
Solute carrier family 5 (SLC5) members are sodium-dependent glucose transporters. (Adapted from FBrf0214274).
Protein Function (UniProtKB)
Imports choline from the extracellular space to the neuron with high affinity. Rate-limiting step in acetylcholine synthesis. Sodium ion and chloride ion dependent (By similarity).
(UniProt, Q9VE46)
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\ChT for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.54

Gene model reviewed during 5.56

gene_with_dicistronic_mRNA ; SO:0000722

Gene model reviewed during 6.13

Sequence Ontology: Class of Gene
gene_with_dicistronic_mRNA
(FlyBase Genome Annotators, 2016, Mackowiak et al., 2015)
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
ChT-RA
FBtr0083668
NM_142486
3299
614
ChT-RB
FBtr0083669
NM_169832
4748
614
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
ChT-PA
FBpp0083083
66.9
614
5.05
NP_650743
AAF55583
ChT-PB
FBpp0083084
66.9
614
5.05
NP_732369
AAN13786
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

614 aa isoforms: ChT-PA, ChT-PB
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\ChT using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 13 -- 16
embryonic antennal sense organ
(Fisher et al., 2012)
embryonic brain
(Fisher et al., 2012)
embryonic head sensory system
(Fisher et al., 2012)
embryonic maxillary sensory complex
(Fisher et al., 2012)
ventral nerve cord
(Fisher et al., 2012)
northern blot
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Romero-Calderon et al., 2007)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
(Aradska et al., 2015)
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\ChT in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, and Transgenic Constructs
Classical and Insertion Alleles ( 1 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of ChT
Transgenic constructs containing regulatory region of ChT
Deletions and Duplications ( 1 )
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
lethal - all die before end of P-stage, with Scer\GAL4repo
partially lethal - majority die, with Scer\GAL4Tab2-201Y
viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
viable, with Scer\GAL4Mef2.PR
viable, with Scer\GAL4pnr-MD237
viable, with Scer\GAL4tin.CΔ4
Other Phenotypes
Allele
body color defective, with Scer\GAL4Tab2-201Y
eclosion defective, with Scer\GAL4NP1131
eclosion defective, with Scer\GAL4NP6024
eclosion defective, with Scer\GAL4repo
eclosion defective, with Scer\GAL4Tab2-201Y
flight defective, with Scer\GAL4Tab2-201Y
increased mortality during development, with Scer\GAL4elav-C155
increased mortality during development, with Scer\GAL4NP1131
increased mortality during development, with Scer\GAL4NP6024
increased mortality during development, with Scer\GAL4nSyb.PS
locomotor behavior defective | adult stage, with Scer\GAL4Tab2-201Y
locomotor behavior defective | larval stage, with Scer\GAL4ChAT.7.4
locomotor behavior defective | larval stage, with Scer\GAL4elav-C155
locomotor behavior defective | larval stage, with Scer\GAL4NP1131
locomotor behavior defective | larval stage, with Scer\GAL4NP6024
locomotor behavior defective | larval stage, with Scer\GAL4nSyb.PS
locomotor behavior defective | larval stage, with Scer\GAL4Tab2-201Y
majority die during embryonic stage, with Scer\GAL4elav-C155
majority die during P-stage, with Scer\GAL4Tab2-201Y
neuroanatomy defective | larval stage, with Scer\GAL4nSyb.PS
neuroanatomy defective | larval stage, with Scer\GAL4Tab2-201Y
pain response defective | adult stage, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
short lived, with Scer\GAL4Tab2-201Y
some die during embryonic stage, with Scer\GAL4nSyb.PS
Phenotype manifest in
Allele
embryonic/larval neuromuscular junction | larval stage, with Scer\GAL4nSyb.PS
embryonic/larval neuromuscular junction | larval stage, with Scer\GAL4Tab2-201Y
NMJ bouton | larval stage, with Scer\GAL4nSyb.PS
NMJ bouton | larval stage, with Scer\GAL4Tab2-201Y
wing, with Scer\GAL4Tab2-201Y
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (12)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\SLC5A7
13 of 15
Yes
Yes
Hsap\SLC5A2
2 of 15
No
No
Hsap\SLC5A4
2 of 15
No
No
Hsap\SLC5A5
2 of 15
No
No
Hsap\SLC5A8
2 of 15
No
No
Hsap\SLC5A9
2 of 15
No
No
Hsap\SLC5A10
2 of 15
No
No
Hsap\SLC5A12
2 of 15
No
No
1  
Hsap\SLC5A1
1 of 15
No
No
Hsap\SLC5A3
1 of 15
No
No
Hsap\SLC5A6
1 of 15
No
No
Hsap\SLC5A11
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (14)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Slc5a7
13 of 15
Yes
Yes
Mmus\Gm5134
2 of 15
No
No
Mmus\Slc5a2
2 of 15
No
No
Mmus\Slc5a4a
2 of 15
No
No
Mmus\Slc5a4b
2 of 15
No
No
Mmus\Slc5a5
2 of 15
No
No
Mmus\Slc5a8
2 of 15
No
No
Mmus\Slc5a9
2 of 15
No
No
Mmus\Slc5a10
2 of 15
No
No
Mmus\Slc5a12
2 of 15
No
No
Mmus\Slc5a1
1 of 15
No
No
Mmus\Slc5a3
1 of 15
No
No
Mmus\Slc5a6
1 of 15
No
No
Mmus\Slc5a11
1 of 15
No
No
Rattus norvegicus (Norway rat) (15)
Rnor\Slc5a7
11 of 13
Yes
Yes
Rnor\RGD1563815
2 of 13
No
No
Rnor\Slc5a2
2 of 13
No
No
Rnor\Slc5a4b
2 of 13
No
No
Rnor\Slc5a4
2 of 13
No
No
Rnor\Slc5a5
2 of 13
No
No
Rnor\Slc5a8
2 of 13
No
No
Rnor\Slc5a9
2 of 13
No
No
Rnor\Slc5a10
2 of 13
No
No
Rnor\Slc5a12
2 of 13
No
No
Rnor\LOC103694870
1 of 13
No
No
Rnor\LOC103694883
1 of 13
No
No
Rnor\LOC103694884
1 of 13
No
No
Rnor\Slc5a1
1 of 13
No
No
Rnor\Slc5a11
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (9)
Xtro\slc5a7
11 of 12
Yes
Yes
Xtro\slc5a2
2 of 12
No
No
Xtro\slc5a5
2 of 12
No
No
Xtro\slc5a8
2 of 12
No
No
Xtro\slc5a9
2 of 12
No
No
Xtro\slc5a12
2 of 12
No
No
Xtro\LOC100492076
1 of 12
No
Yes
Xtro\slc5a1.1
1 of 12
No
No
Xtro\slc5a11
1 of 12
No
No
Danio rerio (Zebrafish) (15)
Drer\slc5a7a
11 of 15
Yes
Yes
Drer\LOC799259
8 of 15
No
Yes
Drer\si:dkeyp-9d4.5
2 of 15
No
No
Drer\slc5a2
2 of 15
No
No
Drer\slc5a5
2 of 15
No
No
Drer\slc5a8
2 of 15
No
No
Drer\slc5a8l
2 of 15
No
No
Drer\slc5a9
2 of 15
No
No
Drer\slc5a12
2 of 15
No
No
Drer\slc5a1
1 of 15
No
No
Drer\slc5a3a
1 of 15
No
No
Drer\slc5a3b
1 of 15
No
No
Drer\slc5a6a
1 of 15
No
No
Drer\slc5a6b
1 of 15
No
No
Drer\slc5a11
1 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (2)
Cele\cho-1
14 of 15
Yes
Yes
Cele\F52H2.4
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (0)
No records found.
Saccharomyces cerevisiae (Brewer's yeast) (1)
Scer\DUR3
2 of 15
Yes
No
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\SPBC23G7.13c
1 of 12
Yes
No
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG0919050A )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00008984
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00010690
Drosophila simulans
Dsim\GD19244
Drosophila sechellia
Dsec\GM17885
Drosophila erecta
Dere\GG23047
Drosophila yakuba
Dyak\GE25555
Drosophila ananassae
Dana\GF17121
Drosophila pseudoobscura pseudoobscura
Dpse\GA20532
Drosophila persimilis
Dper\GL24427
Drosophila willistoni
Dwil\GK13737
Drosophila virilis
Dvir\GJ14405
Drosophila mojavensis
Dmoj\GI10807
Drosophila grimshawi
Dgri\GH18618
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG091502U5 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17013082
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_02742
Mayetiola destructor
Hessian fly
Mdes\Mdes014175
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL008432
Anopheles darlingi
American malaria mosquito
Adar\ADAC001092
Anopheles gambiae
Malaria mosquito
Agam\AGAP002366
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ001604
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W02XT )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA013465
Danaus plexippus
Monarch butterfly
Dple\DPOGS210544-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL006429
Heliconius melpomene
Postman butterfly
Hmel\HMEL003480
Apis florea
Little honeybee
Aflo\2836482756
Apis florea
Little honeybee
Aflo\2499916308
Apis mellifera
Western honey bee
Amel\GB41372
Apis mellifera
Western honey bee
Amel\GB43293
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP11312
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP24910
Bombus terrestris
Buff-tailed bumblebee
Bter\15201670
Bombus terrestris
Buff-tailed bumblebee
Bter\15206067
Linepithema humile
Argentine ant
Lhum\LH18371
Linepithema humile
Argentine ant
Lhum\LH18373
Linepithema humile
Argentine ant
Lhum\LH11048
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001d59
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000c38
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG013914
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG010102
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_01121
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_10791
Tribolium castaneum
Red flour beetle
Tcas\TC000935
Pediculus humanus
Human body louse
Phum\PHUM569780
Pediculus humanus
Human body louse
Phum\PHUM221130
Rhodnius prolixus
Kissing bug
Rpro\RPRC011713
Cimex lectularius
Bed bug
Clec\CLEC006677
Cimex lectularius
Bed bug
Clec\CLEC006675
Cimex lectularius
Bed bug
Clec\CLEC006674
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI009916
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_10607
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_08433
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X02UN )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR005709
Ixodes scapularis
Black-legged tick
Isca\ISCW012781
Ixodes scapularis
Black-legged tick
Isca\ISCW017788
Stegodyphus mimosarum
African social velvet spider
Smim\KFM65691.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM65690.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur32g01080
Tetranychus urticae
Two-spotted spider mite
Turt\tetur32g02130
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_22271
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_98433
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_208990
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_302757
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G050W )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_7
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_4
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_6
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_1
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_028367gn
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_5
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_3
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_8
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Slc5a7_2
Strongylocentrotus purpuratus
Purple sea urchin
Spur\SPU_023541gn
Ciona intestinalis
Vase tunicate
Cint\LOC100179935
Ciona intestinalis
Vase tunicate
Cint\LOC100184587
Gallus gallus
Domestic chicken
Ggal\LOC428094
Gallus gallus
Domestic chicken
Ggal\SLC5A7
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (15)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
CG2187
2 of 10
CG6723
2 of 10
CG9657
2 of 10
CG10444
2 of 10
CG31262
2 of 10
CG31668
2 of 10
CG32669
2 of 10
CG33124
2 of 10
CG42235
2 of 10
salt
2 of 10
SLC5A11
2 of 10
Smvt
2 of 10
CG5687
1 of 10
CG7720
1 of 10
CG34337
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 2 )
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    SLC5A7; solute carrier family 5 member 7
    13 of 15
    608761
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Interactions Browser
    Summary of Genetic Interactions
    esyN Network Diagram
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    External Data
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    External Data
    Linkouts
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    3R
    Recombination map

    3-64

    Cytogenetic map
    91C1-91C1
    Sequence location
    3R:18,680,604..18,686,739 [+]
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    91C1-91C1
    Limits computationally determined from genome sequence between P{PZ}sprd05284 and P{PZ}cdi07013&P{lacW}nosj3B6
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location

    3-64

    (FlyBase, 2016)

    3-63.4

    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (4)
    Genomic Clones (22)
    cDNA Clones (14)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    Antibody Information
    Laboratory Generated Antibodies
     

    polyclonal

    (Hamid et al., 2019)
    Commercially Available Antibodies
     
    Other Information
    Relationship to Other Genes
    Source for database identify of

    Source for identity of: ChT CG7708

    (Hamid et al., 2019)
    Source for database merge of
    Additional comments

    One or more of the processed transcripts for these genes contain several non-overlapping open reading frames (ORFs). The non-overlapping ORFs are represented by CG46318 (FBgn0284234) and CG7708 (FBgn0038641).

    (FlyBase Genome Annotators, 2016)
    Other Comments
    Origin and Etymology
    Discoverer
    Etymology
    Identification
    External Crossreferences and Linkouts ( 31 )
    Sequence Crossreferences
    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
    GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
    RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
    UniProt/Swiss-Prot - Manually annotated and reviewed records of protein sequence and functional information
    Other crossreferences
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    InterPro - A database of protein families, domains and functional sites
    KEGG Genes - Molecular building blocks of life in the genomic space.
    modMine - A data warehouse for the modENCODE project
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    DRSC - Results frm RNAi screens
    FLIGHT - Cell culture data for RNAi and other high-throughput technologies
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
    FlyMine - An integrated database for Drosophila genomics
    Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.
    Synonyms and Secondary IDs (4)
    Datasets (0)
    Study focus (0)
    Experimental Role
    Project
    Project Type
    Title
    References (36)