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Gene Dmel\Arc42

General Information
Symbol	Dmel\Arc42	Species	D. melanogaster
Name	Arc42	Annotation symbol	CG4703
Feature type	protein_coding_gene	FlyBase ID	FBgn0038742
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	dARC42
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	92B4-92B4	Sequence location	3R:15,703,470..15,705,034 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Arc42 is referred to in FlyBase by the symbol Dmel\Arc42 (CG4703, FBgn0038742). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: RNA polymerase II transcription cofactor activity; acyl-CoA dehydrogenase activity. There is experimental evidence that it is involved in the biological process: dendrite morphogenesis. 5 alleles are reported. The phenotype of these alleles is annotated with: wing. It has one annotated transcript and one annotated polypeptide. Protein features are: Acyl-CoA dehydrogenase, N-terminal; Acyl-CoA dehydrogenase, conserved site; Acyl-CoA dehydrogenase/oxidase; Acyl-CoA dehydrogenase/oxidase C-terminal; Acyl-CoA dehydrogenase/oxidase, N-terminal; Acyl-CoA oxidase/dehydrogenase, central domain; Acyl-CoA oxidase/dehydrogenase, type 1. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval fat body, adult spermathecae. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult ovary, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1640900_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Arc42. Gene sequence location is 3R:15703470..15705034.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 92B4-92B4   Limits computationally determined from genome sequence between P{PZ}l(3)1058510585 and P{EP}SyndEP409
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Arc42 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Arc42-RA FBtr0083817  NM_142583   1410   405
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Arc42-PA   FBpp0083227   43.7   405   7.99     NP_650840   AAF55709
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Acyl-CoA dehydrogenase, conserved site (IPR006089) Acyl-CoA oxidase/dehydrogenase, type 1 (IPR006090) Acyl-CoA oxidase/dehydrogenase, central domain (IPR006091) Acyl-CoA dehydrogenase, N-terminal (IPR006092) Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075) Acyl-CoA dehydrogenase/oxidase (IPR009100) Acyl-CoA dehydrogenase/oxidase, N-terminal (IPR013786) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME04703
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF55709   AI259796   AI260238   AI294627   AI403514   AI544286   AY119269 AAM51129   BI167099   BI227924   BI237293   BI354786   BI641321   CO314138   CO316439   CO317335   CZ485587   CZ485588   EC089401   EC214125   EC226988   EV583880   GH748358   GH785302   GH812201   GH843628   GH859768   GH867348   GH898883   GH905034   GH922285
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VDT1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic/larval midgut   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Many larval and adult organs/tissues expressed at moderate levels. Expression at high levels in the following post-embryonic organs or tissues: larval fat body, adult spermathecae. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, adult fat body, larval/adult salivary gland, larval trachea, adult ovary, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body  (653.7) Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca  (853.6) Adult InseminatedFemale Spermatheca  (672.8) Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body  653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca  (853.6) Adult InseminatedFemale Spermatheca  672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    146.625 Larval Midgut    114.8 Larval Hindgut    200.7 Larval Malpighian Tubules    190.4 Larval Fat Body    653.7 Larval Salivary Gland    100.5 Larval Trachea    238.625 Larval Carcass    223.2 Adult Head    246.7 Adult Eye    119.65 Adult Brain    89.5 Adult Thoracic-Abdominal Ganglion    112.5 Adult Crop    339.1 Adult Midgut    161.3 Adult Hindgut    290.6 Adult Malpighian Tubules    210.8 Adult Fat Body    493.8 Adult Salivary Gland    101.6 Adult Heart    394.925 Adult VirginFemale Spermatheca    853.6 Adult InseminatedFemale Spermatheca    672.8 Adult Ovary    259 Adult Testis    42.8 Adult Male Accessory Gland    62.2 Adult Carcass    350.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    246.7   NA  Eye    119.65   NA  Brain    89.5   146.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    112.5   NA  Crop    339.1   114.8  Midgut    161.3   200.7  Hindgut    290.6   190.4  Malpighian Tubules    210.8   653.7  Fat Body    493.8   100.5  Salivary Gland    101.6   NA  Heart    394.925   238.625  Trachea    NA   NA  VirginFemale Spermatheca    853.6   NA  InseminatedFemale Spermatheca    672.8   NA  Ovary    259   NA  Testis    42.8   NA  Male Accessory Gland    62.2   223.2  Carcass    350.6 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female  (27) head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering  (30) fat body, white prepupae  (28) fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female  (38) ovary, mated 4-day female  (36) testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female  27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering  30 fat body, white prepupae  28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female  (38) ovary, mated 4-day female  (36) testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    19 central nervous system, larvae L3    14 central nervous system, pupae P8    10 head, virgin 1-day female    14 head, virgin 4-day female    14 head, virgin 20-day female    27 head, mated 1-day female    13 head, mated 4-day female    13 head, mated 20-day female    19 head, mated 1-day male    15 head, mated 4-day male    13 head, mated 20-day male    22 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    4 digestive system, larvae L3 wandering    11 digestive system, 1-day adult    11 digestive system, 4-day adult    9 digestive system, 20-day adult    10 fat body, larvae L3 wandering    30 fat body, white prepupae    28 fat body, pupae P8    11 carcass, larvae L3 wandering    16 carcass, 1-day adult    15 carcass, 4-day adult    14 carcass, 20-day adult    21 ovary, virgin 4-day female    38 ovary, mated 4-day female    36 testis, mated 4-day male    14 accessory gland, mated 4-day male    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (71) embryo 02-04hr    19 embryo 04-06hr  (38) embryo 06-08hr  (30) embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2  (32) larva L3 12hr old  (44) larva L3 puffstage 1-2  (39) larva L3 puffstage 3-6  (38) larva L3 puffstage 7-9  (31) white prepupae new  (31) white prepupae 12hr    20 white prepupae 24hr  (29) pupae 2d postWPP  (27) pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day  26 adult male 30day    23 adult female 01day  (30) adult female 05day  (43) adult female 30day  (49) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (71) embryo 02-04hr    19 embryo 04-06hr  (38) embryo 06-08hr  30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2  32 larva L3 12hr old  (44) larva L3 puffstage 1-2  (39) larva L3 puffstage 3-6  (38) larva L3 puffstage 7-9  31 white prepupae new  31 white prepupae 12hr    20 white prepupae 24hr  29 pupae 2d postWPP  27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day  26 adult male 30day    23 adult female 01day  30 adult female 05day  (43) adult female 30day  (49) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    71 embryo 02-04hr    19 embryo 04-06hr    38 embryo 06-08hr    30 embryo 08-10hr    21 embryo 10-12hr    16 embryo 12-14hr    10 embryo 14-16hr    14 embryo 16-18hr    12 embryo 18-20hr    13 embryo 20-22hr    8 embryo 22-24hr    7 larva L1    14 larva L2    32 larva L3 12hr old    44 larva L3 puffstage 1-2    39 larva L3 puffstage 3-6    38 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    20 white prepupae 24hr    29 pupae 2d postWPP    27 pupae 3d postWPP    24 pupae 4d postWPP    16 adult male 01day    24 adult male 05day    26 adult male 30day    23 adult female 01day    30 adult female 05day    43 adult female 30day    49 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2    135 ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (44) Schneider line 2 Sg4  (54) embryonic 1182-4H    23 embryonic GM2  (35) embryonic Kc167  (27) embryonic S1  (79) embryonic S3  (36) leg disc CME L1  (33) wing disc CME-W2  (32) wing disc ML-DmD8  (33) wing disc ML-DmD9  (41) wing disc ML-DmD16-c3    23 wing disc ML-DmD21  (45) wing disc ML-DmD32  (34) haltere disc ML-DmD17-c3  (47) eye-antennal disc ML-DmD11  (40) antennal disc ML-DmD20-c5  (41) mixed discs ML-DmD4-c1  (34) CNS ML-DmBG1-c1  (38) CNS ML-DmBG2-c2  (34) tumorous blood cells mbn2  (135) ovary fGS/OSS    12 ovary OSC  (34) ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2  (135) ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2    135 ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2    135 ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (44) Schneider line 2 Sg4  (54) embryonic 1182-4H    23 embryonic GM2  (35) embryonic Kc167  27 embryonic S1  (79) embryonic S3  (36) leg disc CME L1  (33) wing disc CME-W2  32 wing disc ML-DmD8  (33) wing disc ML-DmD9  (41) wing disc ML-DmD16-c3    23 wing disc ML-DmD21  (45) wing disc ML-DmD32  (34) haltere disc ML-DmD17-c3  (47) eye-antennal disc ML-DmD11  (40) antennal disc ML-DmD20-c5  (41) mixed discs ML-DmD4-c1  (34) CNS ML-DmBG1-c1  (38) CNS ML-DmBG2-c2  (34) tumorous blood cells mbn2  (135) ovary fGS/OSS    12 ovary OSC  (34) ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2  135 ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    44 Schneider line 2 Sg4    54 embryonic 1182-4H    23 embryonic GM2    35 embryonic Kc167    27 embryonic S1    79 embryonic S3    36 leg disc CME L1    33 wing disc CME-W2    32 wing disc ML-DmD8    33 wing disc ML-DmD9    41 wing disc ML-DmD16-c3    23 wing disc ML-DmD21    45 wing disc ML-DmD32    34 haltere disc ML-DmD17-c3    47 eye-antennal disc ML-DmD11    40 antennal disc ML-DmD20-c5    41 mixed discs ML-DmD4-c1    34 CNS ML-DmBG1-c1    38 CNS ML-DmBG2-c2    34 tumorous blood cells mbn2    135 ovary fGS/OSS    12 ovary OSC    34 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult  26 Cadmium 50 mM 6 hrs, larvae L3  (33) Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  (27) Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3  (32) Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3  (32) Caffeine 1.5 mg/ml 4 hrs, larvae L3  26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult  26 Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3  (32) Rotenone 8 μg 12 hrs, larvae L3  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult  26 Cadmium 50 mM 6 hrs, larvae L3  (33) Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult  27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3  32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3  32 Caffeine 1.5 mg/ml 4 hrs, larvae L3  26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult  26 Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3  32 Rotenone 8 μg 12 hrs, larvae L3  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    8 heat shock, 4-day adult    26 Cadmium 50 mM 6 hrs, larvae L3    33 Cadmium 50 mM 12 hrs, larvae L3    25 Cadmium 50 mM 48 hrs, 4-day adult    25 Cadmium 100 mM 48 hrs, 4-day adult    27 Copper 0.5 mM 12 hrs, larvae L3    20 Copper 15 mM 48 hrs, 4-day adult    6 Zinc 5 mM 12 hrs, larvae L3    12 Zinc 4.5 mM 48 hrs, 4-day adult    7 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    22 Ethanol 10% 3 hrs, larvae L3    32 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    23 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    26 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    32 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_02 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • SD24551 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038742 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4703-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable Arc42f03032 viable, with Scer\GAL4pnr-MD237 Arc42GD11398 Sterility Allele fertile Arc42f03032 Other Phenotypes Allele visible, with Scer\GAL4Bx-MS1096 Arc42GD11398 Arc42KK100761 Phenotype manifest in Allele wing, with Scer\GAL4Bx-MS1096 Arc42GD11398 Arc42KK100761
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of Arc42 Class Mutagen Stocks Known lesion Arc42f03032 piggyBac transposase 2 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Arc42 Class Mutagen Stocks Known lesion Arc42GD11398 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Arc42GL00502 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Arc42KK100761 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes Arc42NIG.4703R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD11398} NA P{KK100761} NA P{NIG.4703R} NA P{TRiP.GL00502} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}Arc42f03032 NA
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
dendrite morphogenesis inferred from mutant phenotype (Parrish et al., 2006)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term Evidence References
acyl-CoA dehydrogenase activity inferred from sequence or structural similarity with UniProtKB:P16219 (FlyBase, 1992-) flavin adenine dinucleotide binding inferred from electronic annotation with InterPro:IPR013786 (FlyBase Curators et al., 2004-) RNA polymerase II transcription cofactor activity inferred from sequence or structural similarity (Boube et al., 2000)
Biological Process
CV term Evidence References
oxidation-reduction process inferred from electronic annotation with InterPro:IPR006089, InterPro:IPR006090, InterPro:IPR006091, InterPro:IPR006092, InterPro:IPR009075, InterPro:IPR009100, InterPro:IPR013786 (FlyBase Curators et al., 2004-) transcription initiation from RNA polymerase II promoter inferred from sequence or structural similarity (Boube et al., 2000)
Cellular Component
CV term Evidence References
mediator complex inferred from sequence or structural similarity (Boube et al., 2000)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Arc42 - CG11839 experimental knowledge based (Guruharsha et al., 2011) Arc42 - CG30338 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Arc42 - CG4860 experimental knowledge based (Guruharsha et al., 2011) Arc42 - CG7881 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Arc42 - Gie anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Arc42 - SelD experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Arc42 - r-l experimental knowledge based (Guruharsha et al., 2011) Arc42 - βggt-II anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Arc42 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0038742 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42364
Orthologs
OrthoDB Orthologs (66) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6RFMCM Dipteran inclusive ortholog search EOG6QRHCP Insect inclusive ortholog search EOG6GHXJP Arthropod inclusive ortholog search EOG69320D Metazoa inclusive ortholog search EOG6DC676
Orthologs in Drosophila Species (EOG6RFMCM)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Arc42     Drosophila simulans   Dsim\GD19319 Y   Drosophila sechellia   Dsec\GM16092     Drosophila sechellia   Dsec\GM26869 Y   Drosophila erecta   Dere\Arc42 Y   Drosophila yakuba   Dyak\GE25631 Y   Drosophila ananassae   Dana\GF17623 Y   Drosophila pseudoobscura pseudoobscura   Dpse\Arc42 Y   Drosophila persimilis   Dper\GL12205 Y   Drosophila willistoni   Dwil\Arc42 Y   Drosophila virilis   Dvir\GJ10995 Y   Drosophila mojavensis   Dmoj\GI22432 Y   Drosophila grimshawi   Dgri\GH16400 Y
Orthologs in non-Drosophila Dipterans (EOG6QRHCP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL004137   Anopheles gambiae Malaria mosquito  Agam\AGAP001951   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ011631
Orthologs in non-Dipteran Insects (EOG6GHXJP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\Arc42 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG004584 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10966 Y Atta cephalotes Leafcutter ant  Acep\ACEP20083 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO19201 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19667 Y Linepithema humile Argentine ant  Lhum\LH23708 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB26010 Y Solenopsis invicta Red fire ant  Sinv\SINV13961 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI009364 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI002805 Y Bombyx mori Silkmoth  Bmor\BGIBMGA013140 Y Pediculus humanus Human body louse  Phum\PHUM510580 Y Tribolium castaneum Red flour beetle  Tcas\GLEAN_15428 Y
Orthologs in non-Insect Arthropods (EOG69320D)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\nad5 Y Ixodes scapularis Deer tick  Isca\ISCW002863 Y
Orthologs in non-Arthropod Metazoa (EOG6DC676)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\acdh-2 Y Caenorhabditis elegans Nematode  Cele\acdh-3 Y Caenorhabditis elegans Nematode  Cele\acdh-10 Y Caenorhabditis elegans Nematode  Cele\acdh-4 Y Caenorhabditis elegans Nematode  Cele\acdh-1 Y Caenorhabditis elegans Nematode  Cele\acdh-7 Y Caenorhabditis elegans Nematode  Cele\acdh-9 Y Caenorhabditis elegans Nematode  Cele\acdh-8 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005150gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008406gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_025313gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_010247gn Y Danio rerio Zebrafish  Drer\acads Y Danio rerio Zebrafish  Drer\acadm Y Danio rerio Zebrafish  Drer\acadsb Y Danio rerio Zebrafish  Drer\acad8 Y Xenopus tropicalis Western clawed frog  Xtro\acads Y Xenopus tropicalis Western clawed frog  Xtro\acad8 Y Xenopus tropicalis Western clawed frog  Xtro\acadsb Y Xenopus tropicalis Western clawed frog  Xtro\acadm Y Gallus gallus Domestic chicken  Ggal\ACADSB Y Gallus gallus Domestic chicken  Ggal\ACAD8 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000018744 Y Gallus gallus Domestic chicken  Ggal\ACADS Y Mus musculus House mouse  Mmus\Acadsb Y Mus musculus House mouse  Mmus\Acads Y Mus musculus House mouse  Mmus\Acadm Y Rattus norvegicus Norway rat  Rnor\Acadm Y Rattus norvegicus Norway rat  Rnor\Acads Y Rattus norvegicus Norway rat  Rnor\Acadsb Y Homo sapiens Human  Hsap\ACADSB Y Homo sapiens Human  Hsap\ACADM Y Homo sapiens Human  Hsap\ACADS Y Homo sapiens Human  Hsap\ACAD8 Y
Human Orthologs (4)
Gene OMIM HGNC Hsap\ACADSB     Hsap\ACADM     Hsap\ACADS     Hsap\ACAD8
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19319 Drosophila sechellia Dsec\GM26869 Drosophila erecta Dere\Arc42 Drosophila yakuba Dyak\GE25631 Drosophila ananassae Dana\GF17623 Drosophila pseudoobscura pseudoobscura Dpse\Arc42 Drosophila persimilis Dper\GL12205 Drosophila willistoni Dwil\Arc42 Drosophila virilis Dvir\GJ10995 Drosophila mojavensis Dmoj\GI22432 Drosophila grimshawi Dgri\GH16400
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	18611 w1118; PBac{WH}Arc42f03032 36083 y1 sc* v1; P{TRiP.GL00502}attP2
Harvard	- PBac{WH}Arc42f03032
VDRC	v26601 w1118; P{GD11398}v26601 v26603 w1118; P{GD11398}v26603
Genomic Clones ( 1 )
	BACR02O09 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 26 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	SD24551
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH22971 GM28273 LP03290 LP03959 LP08043 RE07403 RE25315 RE33501 SD10783
Other clones	108538 161299 163463 Dmel_dig_014908_0613_1475 EK235161 EK264951 EK267717 RP003026740 RP003089669 RP003122319 RP003132008 RP003223628 RP003327118 RP003333283 RP003400938 RP003578937
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038742 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42364
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Arc42 CG4703 (Boube et al., 2000)
Source for database merge of
Additional comments
Other Comments
	dsRNA has been made from templates generated with primers directed against this gene. RNAi of Arc42 results in increased arborization of ddaD and ddaE neurons. (Parrish et al., 2006)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142583 RefSeq (Proteins) • NP_650840 DDBJ / EMBL / GenBank • AAF55709 AAM51129 AY119269 BI641321 CZ485587 CZ485588 Entrez Gene - A searchable database of RefSeq genes. • 42364 UniProtKB/TrEMBL • Q9VDT1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Acyl-CoA dehydrogenase, conserved site (IPR006089) Acyl-CoA oxidase/dehydrogenase, type 1 (IPR006090) Acyl-CoA oxidase/dehydrogenase, central domain (IPR006091) Acyl-CoA dehydrogenase, N-terminal (IPR006092) Acyl-CoA dehydrogenase/oxidase C-terminal (IPR009075) Acyl-CoA dehydrogenase/oxidase (IPR009100) Acyl-CoA dehydrogenase/oxidase, N-terminal (IPR013786) MitoDrome - A database of annotated Dmel nuclear genes encoding mitochondrial proteins • MTDROME04703 BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • SD24551
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0038742 DRSC - Results from RNAi screens. • FBgn0038742 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038742 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG4703-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038742 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42364 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42364 modMine - Data generated by the modENCODE project. • FBgn0038742
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	Arc42 (Parrish et al., 2006, Sun et al., 2010, Friedman et al., 2011, Riedl et al., 2005, Wheeler et al., 2004, Japanese National Institute of Genetics, 2012.5.21) CG4703 (Boube et al., 2000, Sun et al., 2010, Keleman et al., 2009.8.5, Ni et al., 2011.7.19, Riedl et al., 2005, Cammarato et al., 2011, Wheeler et al., 2004) dARC42 (Boube et al., 2000, Levine and Tjian, 2003)
Name Synonym	Arc42 (Cammarato et al., 2011)
Secondary FlyBase IDs
References ( 28 )
Generate a list of	All references relating to this gene ( 28 )
List References by type	Research paper  ( 7 ) Supplementary material  ( 5 ) Review  ( 1 ) Personal communication to FlyBase  ( 9 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Friedman et al., 2011, Sci. Signal. 4(196): rs10 Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. [FBrf0216513] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...