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Gene Dmel\RhoGAP93B

General Information
Symbol	Dmel\RhoGAP93B	Species	D. melanogaster
Name	Rho GTPase activating protein at 93B	Annotation symbol	CG3421
Feature type	protein_coding_gene	FlyBase ID	FBgn0038853
Gene Model Status	Current	Stock availability	13 publicly available
Also Known As	Vilse, CrGAP
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	93B10-93B11	Sequence location	3R:16,908,765..16,923,549 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Rho GTPase activating protein at 93B is referred to in FlyBase by the symbol Dmel\RhoGAP93B (CG3421, FBgn0038853). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: Rho GTPase activator activity. There is experimental evidence that it is involved in the biological process: axon guidance. 17 alleles are reported. The phenotypes of these alleles are annotated with: medial longitudinal fascicle; commissure; eye; longitudinal connective; ganglionic branch primordium; ventral midline. It has one annotated transcript and one annotated polypeptide. Protein features are: MyTH4 domain; Rho GTPase activation protein; Rho GTPase-activating protein domain; WW domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval/adult fat body, larval trachea, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1630531_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RhoGAP93B. Gene sequence location is 3R:16908765..16923549.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02	Controlled Vocabulary Terms Rho GTPase activator activity
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 93B10-93B11   Limits computationally determined from genome sequence between P{PZ}Atpα01164 and P{PZ}mod(mdg4)07038&P{lacW}mod(mdg4)L3101
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RhoGAP93B for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.48
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RhoGAP93B-RA FBtr0084036  NM_142682   5353   1330
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RhoGAP93B-PA   FBpp0083438   146.3   1330   8.47     NP_650939   AAF55845
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Rho GTPase-activating protein domain (IPR000198) MyTH4 domain (IPR000857) WW domain (IPR001202) Rho GTPase activation protein (IPR008936)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA201393   AA816796   AA948846   AA949239   AA951585   AE014297 AAF55845   AI110095   AI292967   AI530786   AI533301   AI533622   AW942125   AW944179   BI564920   BT003438 AAO39441   BT010076 AAQ22545   BT053685   CA807329   CA807330   CL610184   CO177115   CO177593   CO186410   CO267009   CO269505   CO288200   CO290727   CO292316   CO293085   CO295006   CO296683   CO302715   CO320885   CO321668   CO325096   CO327888   CO331430   CO333399   CO339027   CO339916   CO340039   CO344660   EC062972   EC062987   EC068212   EC070121   EC075061   EC087034   EC195666   EC198780   EC206251   EC212519   EC216461   EC219250   EC221803   EC227128   EC227244   EC227707   EC230074   EC236256   EC240822   EC243845   EC255772   EC255789   EC256331   EC257234   GH771346
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VDE9 Q86P77 Q7YU00
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, larval/adult fat body, larval trachea, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain  (684.2) Adult Thoracic-Abdominal Ganglion  (813) Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain  684.2 Adult Thoracic-Abdominal Ganglion  813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    423.15 Larval Midgut    27 Larval Hindgut    79.9 Larval Malpighian Tubules    70.9 Larval Fat Body    323.6 Larval Salivary Gland    86.5 Larval Trachea    100.55 Larval Carcass    84.375 Adult Head    193.3 Adult Eye    113.525 Adult Brain    684.2 Adult Thoracic-Abdominal Ganglion    813 Adult Crop    63 Adult Midgut    18.8 Adult Hindgut    31.7 Adult Malpighian Tubules    29 Adult Fat Body    108.5 Adult Salivary Gland    33.9 Adult Heart    94.55 Adult VirginFemale Spermatheca    51.7 Adult InseminatedFemale Spermatheca    66.5 Adult Ovary    242.5 Adult Testis    30.1 Adult Male Accessory Gland    16 Adult Carcass    64.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    193.3   NA  Eye    113.525   NA  Brain    684.2   423.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    813   NA  Crop    63   27  Midgut    18.8   79.9  Hindgut    31.7   70.9  Malpighian Tubules    29   323.6  Fat Body    108.5   86.5  Salivary Gland    33.9   NA  Heart    94.55   100.55  Trachea    NA   NA  VirginFemale Spermatheca    51.7   NA  InseminatedFemale Spermatheca    66.5   NA  Ovary    242.5   NA  Testis    30.1   NA  Male Accessory Gland    16   84.375  Carcass    64.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8  26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male  (27) head, mated 4-day male  (31) head, mated 20-day male  (29) salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  (30) ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8  26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male  27 head, mated 4-day male  31 head, mated 20-day male  29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female  30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    10 central nervous system, larvae L3    25 central nervous system, pupae P8    26 head, virgin 1-day female    19 head, virgin 4-day female    17 head, virgin 20-day female    14 head, mated 1-day female    16 head, mated 4-day female    20 head, mated 20-day female    13 head, mated 1-day male    27 head, mated 4-day male    31 head, mated 20-day male    29 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    17 digestive system, larvae L3 wandering    3 digestive system, 1-day adult    1 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    2 fat body, white prepupae    11 fat body, pupae P8    9 carcass, larvae L3 wandering    9 carcass, 1-day adult    5 carcass, 4-day adult    7 carcass, 20-day adult    6 ovary, virgin 4-day female    30 ovary, mated 4-day female    22 testis, mated 4-day male    3 accessory gland, mated 4-day male    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (30) embryo 02-04hr  (37) embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr  (31) embryo 16-18hr  (28) embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  30 embryo 02-04hr  (37) embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr  31 embryo 16-18hr  28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    30 embryo 02-04hr    37 embryo 04-06hr    25 embryo 06-08hr    19 embryo 08-10hr    22 embryo 10-12hr    18 embryo 12-14hr    22 embryo 14-16hr    31 embryo 16-18hr    28 embryo 18-20hr    14 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    5 larva L2    5 larva L3 12hr old    3 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    12 white prepupae 12hr    16 white prepupae 24hr    16 pupae 2d postWPP    18 pupae 3d postWPP    12 pupae 4d postWPP    9 adult male 01day    8 adult male 05day    9 adult male 30day    9 adult female 01day    13 adult female 05day    19 adult female 30day    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2  (35) embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2  (35) embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    7 embryonic 1182-4H    11 embryonic GM2    35 embryonic Kc167    19 embryonic S1    9 embryonic S3    7 leg disc CME L1    7 wing disc CME-W2    10 wing disc ML-DmD8    10 wing disc ML-DmD9    10 wing disc ML-DmD16-c3    11 wing disc ML-DmD21    5 wing disc ML-DmD32    13 haltere disc ML-DmD17-c3    10 eye-antennal disc ML-DmD11    9 antennal disc ML-DmD20-c5    15 mixed discs ML-DmD4-c1    14 CNS ML-DmBG1-c1    8 CNS ML-DmBG2-c2    12 tumorous blood cells mbn2    9 ovary fGS/OSS    13 ovary OSC    21 ovary OSS    8 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    11 cold shock, 4-day adult    7 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    9 Cadmium 100 mM 48 hrs, 4-day adult    20 Copper 0.5 mM 12 hrs, larvae L3    1 Copper 15 mM 48 hrs, 4-day adult    15 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    20 Ethanol 5% 3 hrs, larvae L3    2 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    2 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    16 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    17 Paraquat 10 mM 48 hrs, 4-day adult    15 Rotenone 2 μg 12 hrs, larvae L3    2 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_01 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038853 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3421-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal, with Scer\GAL4T80 RhoGAP93BdsRNA.Scer\UAS lethal, with Scer\GAL4αTub84B.PL RhoGAP93BdsRNA.Scer\UAS lethal | embryonic stage | germline clone RhoGAP93B1 lethal | recessive RhoGAP93B1 viable RhoGAP93BEY06358 viable, with Scer\GAL4pnr-MD237 RhoGAP93BGD10961 Sterility Allele fertile RhoGAP93BEY06358 Other Phenotypes Allele visible, with Scer\GAL4ey.PB RhoGAP93BdsRNA.Scer\UAS Phenotype manifest in Allele commissure, with Scer\GAL4elav.PLu RhoGAP93BScer\UAS.cHa eye, with Scer\GAL4ey.PB RhoGAP93BdsRNA.Scer\UAS ganglionic branch primordium RhoGAP93B1 ganglionic branch primordium, with RhoGAP93B1, Scer\GAL4bs-23.26 RhoGAP93BScer\UAS.cLa ganglionic branch primordium, with RhoGAP93BScer\UAS.cLa, Scer\GAL4bs-23.26 RhoGAP93B1 longitudinal connective RhoGAP93B1 longitudinal connective, with Scer\GAL4elav.PLu RhoGAP93BScer\UAS.cHa medial longitudinal fascicle, with Scer\GAL4elav.PLu RhoGAP93BScer\UAS.cHa ventral midline, with Scer\GAL4elav.PLu RhoGAP93BScer\UAS.cHa
Classical Alleles ( 9 )
For All Classical Alleles Show
Allele of RhoGAP93B Class Mutagen Stocks Known lesion RhoGAP93BCB-5648-3 1 -- RhoGAP93BEY06358 P-element activity 1 -- RhoGAP93BEY07136 P-element activity 1 -- RhoGAP93BMI04862 1 -- RhoGAP93BNP4461 1 -- RhoGAP93BNP5355 1 -- RhoGAP93B1 loss of function allele P-element activity 0 Yes RhoGAP93BS138901a P-element activity 0 Yes RhoGAP93Bunspecified 0 --
Alleles Carried on Transgenic Constructs ( 8 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RhoGAP93B Class Mutagen Stocks Known lesion RhoGAP93BdsRNA.Scer\UAS in vitro construct - regulatory fusion in vitro construct - RNAi 2 Yes RhoGAP93BGD10961 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes RhoGAP93BHMS01440 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RhoGAP93BJF01660 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RhoGAP93BKK104946 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RhoGAP93BNIG.3421R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes RhoGAP93BScer\UAS.cHa in vitro construct - regulatory fusion 0 Yes RhoGAP93BScer\UAS.cLa in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)e-N12 (Lundstrom et al., 2004) Df(3R)Exel6272 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10961} NA P{KK104946} NA P{NIG.3421R} NA P{TRiP.HMS01440} NA P{TRiP.JF01660} NA P{UAS-RhoGAP93B-dsRNA} NA P{UAS-vilse.L} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}RhoGAP93BEY06358 NA P{EPgy2}RhoGAP93BEY07136 NA miscellaneous insertions Mi{MIC}RhoGAP93BMI04862 NA P{RS3}RhoGAP93BCB-5648-3 NA insertion of enhancer trap binary system P{GawB}RhoGAP93BNP4461 No P{GawB}RhoGAP93BNP5355 No insertion of enhancer trap P{lacW}RhoGAP93BS138901a No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
axon guidance inferred from genetic interaction with robo (Lundstrom et al., 2004) inferred from mutant phenotype (Hu et al., 2005, Lundstrom et al., 2004)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
Rho GTPase activator activity inferred from sequence or structural similarity with Saccharomyces BEM2 (Curators, 2008--)
Biological Process
CV term Evidence References
signal transduction inferred from electronic annotation with InterPro:IPR000198, InterPro:IPR008936 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
cytoskeleton inferred from electronic annotation with InterPro:IPR000857 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RhoGAP93B allele Gene References RhoGAP93B1 Rac1 (Lundstrom et al., 2004) robo (Lundstrom et al., 2004) unspecified nej (Anderson et al., 2005) Rac2 (Lundstrom et al., 2004)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67467 DroID - A comprehensive database of gene and protein interactions. • FBgn0038853 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42496 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q7YU00
Orthologs
OrthoDB Orthologs (43) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6GTKZ8 Dipteran inclusive ortholog search EOG6WH8TT Insect inclusive ortholog search EOG6GQP0V Arthropod inclusive ortholog search EOG6CVDNT Metazoa inclusive ortholog search EOG6VQPG2
Orthologs in Drosophila Species (EOG6GTKZ8)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RhoGAP93B     Drosophila simulans   Dsim\GD20009 Y   Drosophila sechellia   Dsec\GM15105     Drosophila erecta   Dere\GG14905 Y   Drosophila ananassae   Dana\GF18518 Y   Drosophila ananassae   Dana\GF18519     Drosophila pseudoobscura pseudoobscura   Dpse\GA27588 Y   Drosophila persimilis   Dper\GL12680 Y   Drosophila willistoni   Dwil\GK13079 Y   Drosophila virilis   Dvir\GJ10274 Y   Drosophila mojavensis   Dmoj\GI23523 Y   Drosophila grimshawi   Dgri\GH19306 Y
Orthologs in non-Drosophila Dipterans (EOG6WH8TT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL006191   Anopheles gambiae Malaria mosquito  Agam\AGAP004524   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ001672
Orthologs in non-Dipteran Insects (EOG6GQP0V)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB55985   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016040   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH19129   Atta cephalotes Leafcutter ant  Acep\ACEP19727   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13901   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21745   Linepithema humile Argentine ant  Lhum\LH24441   Pogonomyrmex barbatus Red harvester ant  Pbar\PB24961   Solenopsis invicta Red fire ant  Sinv\SINV15200   Acyrthosiphon pisum Pea aphid  Apim\ACYPI004001   Bombyx mori Silkmoth  Bmor\BGIBMGA004713   Pediculus humanus Human body louse  Phum\PHUM046570   Tribolium castaneum Red flour beetle  Tcas\TC030644
Orthologs in non-Insect Arthropods (EOG6CVDNT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_301804   Ixodes scapularis Deer tick  Isca\ISCW008166
Orthologs in non-Arthropod Metazoa (EOG6VQPG2)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\Y92H12BL.4   Caenorhabditis elegans Nematode  Cele\Y92H12BM.1   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_007846gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_016775gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_025421gn   Danio rerio Zebrafish  Drer\si:ch211-218g4.2   Danio rerio Zebrafish  Drer\CH211-274P22.1   Danio rerio Zebrafish  Drer\si:ch211-281p13.1   Xenopus tropicalis Western clawed frog  Xtro\arhgap39   Gallus gallus Domestic chicken  Ggal\ARHGAP39   Mus musculus House mouse  Mmus\Arhgap39   Rattus norvegicus Norway rat  Rnor\Arhgap39   Homo sapiens Human  Hsap\ENSG00000147799
Human Orthologs (1)
Gene OMIM HGNC Hsap\ENSG00000147799
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD20009 Drosophila erecta Dere\GG14905 Drosophila yakuba Dyak\GE25019 Drosophila ananassae Dana\GF18518 Drosophila pseudoobscura pseudoobscura Dpse\GA27588 Drosophila persimilis Dper\GL12680 Drosophila willistoni Dwil\GK13079 Drosophila virilis Dvir\GJ10274 Drosophila mojavensis Dmoj\GI23523 Drosophila grimshawi Dgri\GH19306
Stocks & Reagents
Stocks Listed in FlyBase ( 13 )
Bloomington	31167 y1 v1; P{TRiP.JF01660}attP2 6445 P{UAS-RhoGAP93B-dsRNA}4.1, y1 w* 6686 y1 w*; P{UAS-RhoGAP93B-dsRNA}3.1 38593 y1 w*; Mi{MIC}RhoGAP93BMI04862 35027 y1 sc* v1; P{TRiP.HMS01440}attP2 15990 y1 w67c23; P{EPgy2}RhoGAP93BEY07136 19720 y1 w67c23; P{EPgy2}RhoGAP93BEY06358
Kyoto	123730 w1118; P{RS3}RhoGAP93BCB-5648-3 104683 y* w*; P{GawB}RhoGAP93BNP4461 / TM6, P{UAS-lacZ.UW23-1}UW23-1
VDRC	v100136 P{KK104946}VIE-260B v41933 w1118; P{GD10961}v41933/TM3 v41934 w1118; P{GD10961}v41934/CyO
	More stocks available...
Genomic Clones ( 2 )
	BACR05I01 BACR20N14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 61 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD10379 SD01504
Other clones	FI04035
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH09556 GH16016 LD04560 LD27511 LD28058 LD32195 RH62521 SD05062 SD05517
Other clones	10873 19526 33874 61112 61277 71451 72789 78625 81183 166077 173125 183577 214245.69 214311.66 214317.65 214377.62 272716 CK01.21A.H5 CK01.27B.C3 CK01.66B.G2 CK01.66C.H7 CK01.85D.E12 CK01.96C.F2 CK01.112C.G9 EK019431 EK052532 EK053857 EK067950 EK074953 EK094802 EK148323 EK184751 EK186133 EK195602 EK199821 EK201655 EK208142 EK214631 EK288625 EK299721 EK306809 EP00640 EP08216 EP09640 EP09924 EP19664 ESG017c.B21.1_A02 ESG017c.B21.1_A03 RP003064217
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038853 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42496
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
	dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology. (Kiger et al., 2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142682 RefSeq (Proteins) • NP_650939 DDBJ / EMBL / GenBank • AA816796 AAF55845 AAO39441 AAQ22545 AI530786 AW942125 AW944179 BT003438 BT010076 CL610184 Entrez Gene - A searchable database of RefSeq genes. • 42496 UniProtKB/TrEMBL • Q7YU00 Q9VDE9 Q86P77
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Rho GTPase-activating protein domain (IPR000198) MyTH4 domain (IPR000857) WW domain (IPR001202) Rho GTPase activation protein (IPR008936)
Linkouts
	BioGRID - A database of protein and genetic interactions • 67467 DroID - A comprehensive database of gene and protein interactions. • FBgn0038853 DRSC - Results from RNAi screens. • FBgn0038853 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038853 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG3421-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038853 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42496 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42496 modMine - Data generated by the modENCODE project. • FBgn0038853 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q7YU00
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG3421 (Hu, 2005, Bernards, 2003, Billuart et al., 2001, Greenberg and Hatini, 2011, Keleman et al., 2009.8.5, Ni et al., 2008, Ni et al., 2011.7.19) CrGAP (Hu et al., 2005, Yang and Bashaw, 2006) RhoGAP93B (Bakal et al., 2007, Bakal et al., 2007, Greenberg and Hatini, 2011, Zeitlinger et al., 2007, Nir et al., 2010, Japanese National Institute of Genetics, 2012.5.21) Vilse (Hu et al., 2005) vilse (Lundstrom et al., 2004)
Name Synonym	RhoGAP93B   Rho GTPase activating protein at 93B
Secondary FlyBase IDs
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 10 ) Supplementary material  ( 8 ) Review  ( 1 ) Personal communication to FlyBase  ( 8 ) FlyBase analysis  ( 4 ) Stock list  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers ( 1 )
	Greenberg and Hatini, 2011, Mech. Dev. 128(1-2): 5--17 Systematic expression and loss-of-function analysis defines spatially restricted requirements for Drosophila RhoGEFs and RhoGAPs in leg morphogenesis. [FBrf0212976] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...