A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\sec15

General Information
SymbolDmel\sec15SpeciesD. melanogaster
Namesec15Annotation symbolCG7034
Feature typeprotein_coding_geneFlyBase IDFBgn0038856
Gene Model StatusCurrent Stock availability 6 publicly available
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map93B12-93B12Sequence location3R:16,930,943..16,933,686 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
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Automatically generated summary

See sections below for more information
The gene sec15 is referred to in FlyBase by the symbol Dmel\sec15 (CG7034, FBgn0038856). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: chaeta development; phototaxis; border follicle cell migration; axon guidance; endocytic recycling. 13 alleles are reported. The phenotype of these alleles is annotated with: border follicle cell. It has one annotated transcript and one annotated polypeptide. Protein features are: Exocyst complex subunit Sec15-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, larval Malpighian tubules, larval salivary gland, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1636866_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of sec15. Gene sequence location is 3R:16930943..16933686.

External Summaries
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
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FB2012_01
References
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
93B12-93B12  
Limits computationally determined from genome sequence between P{PZ}Atpα01164 and P{PZ}mod(mdg4)07038&P{lacW}mod(mdg4)L3101  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\sec15 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0084008 FBtr0084034 FBtr0084009 FBpp0083411 FBpp0083436 FBpp0083412 FBti0042974 FBti0112250 FBti0039498 FBti0110097 FBti0011812 FBti0005579
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0084034
  2616
  766
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0083436  
88.7  
766  
6.37  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG5745-RA sec15-RA rtet-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0038856


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0038856
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-06 hour embryonic stages, in adult female stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0038856 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2866)
embryo 02-04hr
 (820)
embryo 04-06hr
 (603)
embryo 06-08hr
 (892)
embryo 08-10hr
 (835)
embryo 10-12hr
 (951)
embryo 12-14hr
 (709)
embryo 14-16hr
 (578)
embryo 16-18hr
 (490)
embryo 18-20hr
 (336)
embryo 20-22hr
 (293)
embryo 22-24hr
 (337)
larva L1
 (382)
larva L2
 (409)
larva L3 12hr old
 (324)
larva L3 puffstage 1-2
 (426)
larva L3 puffstage 3-6
 (593)
larva L3 puffstage 7-9
 (824)
white prepupae new
 (901)
white prepupae 12hr
 (831)
white prepupae 24hr
 (806)
pupae 2d postWPP
 (671)
pupae 3d postWPP
 (456)
pupae 4d postWPP
 (280)
adult male 01day
 (430)
adult male 05day
 (432)
adult male 30day
 (461)
adult female 01day
 (925)
adult female 05day
 (1718)
adult female 30day
 (1755)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2866)
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 (1718)
adult female 30day
 (1755)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0038856 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2866)
embryo 02-04hr
 (820)
embryo 04-06hr
 (603)
embryo 06-08hr
 (892)
embryo 08-10hr
 (835)
embryo 10-12hr
 (951)
embryo 12-14hr
 (709)
embryo 14-16hr
 (578)
embryo 16-18hr
 (490)
embryo 18-20hr
 (336)
embryo 20-22hr
 (293)
embryo 22-24hr
 (337)
larva L1
 (382)
larva L2
 (409)
larva L3 12hr old
 (324)
larva L3 puffstage 1-2
 (426)
larva L3 puffstage 3-6
 (593)
larva L3 puffstage 7-9
 (824)
white prepupae new
 (901)
white prepupae 12hr
 (831)
white prepupae 24hr
 (806)
pupae 2d postWPP
 (671)
pupae 3d postWPP
 (456)
pupae 4d postWPP
 (280)
adult male 01day
 (430)
adult male 05day
 (432)
adult male 30day
 (461)
adult female 01day
 (925)
adult female 05day
 (1718)
adult female 30day
 (1755)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (2866)
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 1718
adult female 30day
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 2866
embryo 02-04hr
 
 820
embryo 04-06hr
 
 603
embryo 06-08hr
 
 892
embryo 08-10hr
 
 835
embryo 10-12hr
 
 951
embryo 12-14hr
 
 709
embryo 14-16hr
 
 578
embryo 16-18hr
 
 490
embryo 18-20hr
 
 336
embryo 20-22hr
 
 293
embryo 22-24hr
 
 337
larva L1
 
 382
larva L2
 
 409
larva L3 12hr old
 
 324
larva L3 puffstage 1-2
 
 426
larva L3 puffstage 3-6
 
 593
larva L3 puffstage 7-9
 
 824
white prepupae new
 
 901
white prepupae 12hr
 
 831
white prepupae 24hr
 
 806
pupae 2d postWPP
 
 671
pupae 3d postWPP
 
 456
pupae 4d postWPP
 
 280
adult male 01day
 
 430
adult male 05day
 
 432
adult male 30day
 
 461
adult female 01day
 
 925
adult female 05day
 
 1718
adult female 30day
 
 1755
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0038856


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0038856
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult thoracico-abdominal ganglion, larval Malpighian tubules, larval salivary gland, adult ovary.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0038856 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0038856 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 98.8
Larval Midgut
 
 70.4
Larval Hindgut
 
 94.4
Larval Malpighian Tubules
 
 154.8
Larval Fat Body
 
 72.9
Larval Salivary Gland
 
 133
Larval Trachea
 
 78.85
Larval Carcass
 
 78.7
Adult Head
 
 76.2
Adult Eye
 
 70.825
Adult Brain
 
 96.4
Adult Thoracic-Abdominal Ganglion
 
 102.7
Adult Crop
 
 86.5
Adult Midgut
 
 74.2
Adult Hindgut
 
 81.9
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 54.3
Adult Salivary Gland no informative data
Adult Heart
 
 74.05
Adult VirginFemale Spermatheca
 
 51.9
Adult InseminatedFemale Spermatheca
 
 60.2
Adult Ovary
 
 224.8
Adult Testis
 
 59.4
Adult Male Accessory Gland
 
 78.1
Adult Carcass no informative data
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules no informative data
Adult Fat Body
 
 
Adult Salivary Gland no informative data
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass no informative data

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 76.2
 
NA 
Eye
 
 70.825
 
NA 
Brain
 
 96.4
 
98.8 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 102.7
 
NA 
Crop
 
 86.5
 
70.4 
Midgut
 
 74.2
 
94.4 
Hindgut
 
 81.9
 
154.8 
Malpighian Tubules
 
 no informative data
 
72.9 
Fat Body
 
 54.3
 
133 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 74.05
 
78.85 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 51.9
 
NA 
InseminatedFemale Spermatheca
 
 60.2
 
NA 
Ovary
 
 224.8
 
NA 
Testis
 
 59.4
 
NA 
Male Accessory Gland
 
 78.1
 
78.7 
Carcass
 
 no informative data

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
axon & photoreceptor cell R7 | somatic clone
axon & photoreceptor cell R8 | somatic clone
eo neuron & mesothoracic tergum & pupa | somatic clone | supernumerary
macrochaeta & mesothoracic tergum | somatic clone
nerve terminal & optic cartridge | somatic clone
nerve terminal & optic cartridge | somatic clone | cell autonomous
thecogen cell & mesothoracic tergum & pupa | somatic clone
tormogen cell & mesothoracic tergum & pupa | somatic clone
hide Classical Alleles ( 4 )
For All Classical Alleles Show

Allele of sec15ClassMutagenStocksKnown lesion
sec1511 Yes
sec1521 Yes
sec153hypomorphic allele - genetic evidence0 Yes
sec15unspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 9 )
For All Alleles Carried on Transgenic Constructs Show

Allele of sec15ClassMutagenStocksKnown lesion
sec15GD121092 Yes
sec15JF026491 Yes
sec15KK1017081 Yes
sec15+t50 Yes
sec15C.Scer\UAS.T:Avic\GFP0 Yes
sec15N.Scer\UAS.T:Avic\GFP0 Yes
sec15Scer\UAS.T:Ivir\HA10 Yes
sec15tCH322-152E240 Yes
sec15VDRC.cUa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not duplicated in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 13 unique terms )
hide Terms Based on Experimental Evidence ( 8 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component
CV term
References
inferred from direct assay
inferred from direct assay
hide Terms Based on Predictions or Assertions ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
non-traceable author statement
inferred from sequence or structural similarity with UniProtKB:Q8TAG9
(assigned by UniProtKB)
non-traceable author statement
inferred from sequence or structural similarity with UniProtKB:Q8TAG9
(assigned by UniProtKB)
non-traceable author statement
inferred from sequence or structural similarity
Cellular Component
CV term
References
inferred from sequence or structural similarity
inferred from sequence or structural similarity with EMBL:AF032668
inferred from sequence or structural similarity with UniProtKB:Q8TAG9
(assigned by UniProtKB)
non-traceable author statement
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
sec15 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 6 )
Bloomington
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 157 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for identity of: sec15 CG7034
Source for database merge of
Additional comments
FlyBase curator comment: the insertion in the "d11525" Exelixis line (P{XP}rtetd11525) was originally assigned to the sec15 gene in FBrf0179797, resulting in the "sec15d11525" (FBal0158687) allele. However, FBrf0184340 shows that the insertion is actually within rtet.
hide Other Comments
S2 cells treated with dsRNA directed against sec15 show normal binding but significantly decreased internalization of E.coli and S.aureus in a phagocytosis assay.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym
Name Synonym
sec15
 
Secondary FlyBase IDs
hide References ( 44 )
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List References by type
hide Recent research papers ( 8 )
Michel et al., 2011, Nat. Commun. 2: 415
Local BMP receptor activation at adherens junctions in the Drosophila germline stem cell niche. [FBrf0214604]
Tong et al., 2011, Neuron 71(3): 447--459
Rich Regulates Target Specificity of Photoreceptor Cells and N-Cadherin Trafficking in the Drosophila Visual System via Rab6. [FBrf0214681]
Assaker et al., 2010, Proc. Natl. Acad. Sci. U.S.A. 107(52): 22558--22563
Spatial restriction of receptor tyrosine kinase activity through a polarized endocytic cycle controls border cell migration. [FBrf0212585]
Benhra et al., 2010, Mol. Biol. Cell 21(12): 2078--2086
Neuralized promotes Basal to apical transcytosis of delta in epithelial cells. [FBrf0211002]
Guichard et al., 2010, Nature 467(7317): 854--858
Anthrax toxins cooperatively inhibit endocytic recycling by the Rab11/Sec15 exocyst. [FBrf0212093]
Tong et al., 2010, Mol. Biol. Cell 21(5): 802--810
Numb independently antagonizes sanpodo membrane targeting and notch signaling in Drosophila sensory organ precursor cells. [FBrf0210112]
Williamson et al., 2010, J. Cell Biol. 189(5): 885--899
A dual function of V0-ATPase a1 provides an endolysosomal degradation mechanism in Drosophila melanogaster photoreceptors. [FBrf0210877]
Windler and Bilder, 2010, Curr. Biol. 20(6): 538--543
Endocytic internalization routes required for delta/notch signaling. [FBrf0210409]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010