FB2021_06, released December 14, 2021

Gene: Dmel\dnd

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General Information
Symbol
Dmel\dnd
Species
D. melanogaster
Name
dead end
Annotation Symbol
CG6560
Feature Type
protein_coding_gene
FlyBase ID
FBgn0038916
Gene Model Status
Current
Stock Availability
5 publicly available
Gene Summary
dead end (dnd) encodes an Arf-like3 GTPase that controls the targeting of exocytosis machinery to specific apical domains in fusion cells during the tracheal branch fusion process. [Date last reviewed: 2019-03-07] (FlyBase Gene Snapshot)
All Summaries
Also Known As

Arl3

Key Links
Genomic Location
Cytogenetic map
93F14-93F14
Sequence location
Recombination map
3-73
RefSeq locus
NT_033777 REGION:21885676..21887355
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (6 terms)
Molecular Function (2 terms)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (2 terms)
CV Term
Evidence
References
enables GTP binding
inferred from biological aspect of ancestor with PANTHER:PTN002904794
(assigned by GO_Central )
(Gaudet et al., 2011)
inferred from sequence alignment with HGNC:694
(Jiang et al., 2007)
enables GTPase activity
inferred from sequence or structural similarity with UniProtKB:Q9WUL7
(FlyBase Curators, 2008--)
Biological Process (2 terms)
Terms Based on Experimental Evidence (1 term)
CV Term
Evidence
References
involved_in branch fusion, open tracheal system
inferred from mutant phenotype
(Caviglia et al., 2016, Kakihara et al., 2008, Jiang et al., 2007)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
involved_in cilium assembly
inferred from sequence model
(Avidor-Reiss et al., 2004)
inferred from biological aspect of ancestor with PANTHER:PTN000195266
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (2 terms)
Terms Based on Experimental Evidence (2 terms)
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
(Kakihara et al., 2008, Jiang et al., 2007)
colocalizes_with microtubule cytoskeleton
inferred from direct assay
(Kakihara et al., 2008)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
is_active_in cytoplasm
inferred from biological aspect of ancestor with PANTHER:PTN002904794
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Gene Snapshot
dead end (dnd) encodes an Arf-like3 GTPase that controls the targeting of exocytosis machinery to specific apical domains in fusion cells during the tracheal branch fusion process. [Date last reviewed: 2019-03-07]
Gene Group (FlyBase)
ARF GTPASES -
The ADP-Ribosylation Factor (Arf) family are members of the Ras superfamily of small GTPases. Arfs are involved in the regulation of vesicular trafficking mediating processes such as cargo-sorting, vesicle assembly and membrane fusion. (Adapted from PMID:15731001).
Gene Model and Products
Number of Transcripts
1
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\dnd for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.47

Gene model reviewed during 5.55

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
dnd-RA
FBtr0084151
NM_142738
836
179
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
dnd-PA
FBpp0083549
20.1
179
8.46
NP_650995
AAF55936
Polypeptides with Identical Sequences

There is only one protein coding transcript and one polypeptide associated with this gene

Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\dnd using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Polypeptide Expression
immunolocalization
Stage
Tissue/Position (including subcellular localization)
Reference
embryonic stage 11 -- 17
embryonic/larval dorsal trunk
• cytoplasm
(Jiang et al., 2007)
embryonic stage 13 -- 17
embryonic/larval lateral trunk
• cytoplasm
(Jiang et al., 2007)
presumptive embryonic/larval peripheral nervous system | restricted
• cytoplasm
(Jiang et al., 2007)
embryonic stage 14 -- 17
embryonic/larval dorsal branch
• cytoplasm
(Jiang et al., 2007)
embryonic/larval ganglionic branch
• cytoplasm
(Jiang et al., 2007)
mass spectroscopy
Stage
Tissue/Position (including subcellular localization)
Reference
adult stage
adult head
• membrane
(Aradska et al., 2015)
Additional Descriptive Data

In embryos, dnd protein is observed in the cytoplasm of tracheal fusion cells. It is found in all tracheal fusion cells including dorsal trunk (from stage 11 on), lateral trunk (from stage 13 on), dorsal branch (from stage 14 on) and ganglionic branch (from stage 14 on) fusion cells. The order of expression in the different tracheal branch types matches the order in which they fuse. Expression is also observed in sensory cells.

(Jiang et al., 2007)
Marker for
 
Subcellular Localization
CV Term
Evidence
References
located_in cytoplasm
inferred from direct assay
(Kakihara et al., 2008, Jiang et al., 2007)
colocalizes_with microtubule cytoskeleton
inferred from direct assay
(Kakihara et al., 2008)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\dnd in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
Flygut - An atlas of the Drosophila adult midgut
Images
FlyExpress - Embryonic expression images (BDGP data)
  • Stages(s) 11-12
  • Stages(s) 13-16
FlyBase Wiki
Image Based Resources
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 2 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 18 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of dnd
Transgenic constructs containing regulatory region of dnd
Aberrations (Deficiencies and Duplications) ( 3 )
Alleles Representing Disease-Implicated Variants
Phenotypes
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (9)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\ARL3
12 of 15
Yes
Yes
Hsap\ARL2
2 of 15
No
No
Hsap\ARFRP1
1 of 15
No
No
Hsap\ARL1
1 of 15
No
No
Hsap\ARL6
1 of 15
No
No
1  
Hsap\ARL13B
1 of 15
No
Yes
Hsap\ARL14
1 of 15
No
No
Hsap\CYP11B1
1 of 15
No
No
Hsap\NCOA2
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (7)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Arl3
13 of 15
Yes
Yes
Mmus\Arl2
2 of 15
No
No
Mmus\Arl1
1 of 15
No
No
Mmus\Arl6
1 of 15
No
No
Mmus\Arl11
1 of 15
No
No
Mmus\Arl13b
1 of 15
No
Yes
Mmus\Arl14
1 of 15
No
No
Rattus norvegicus (Norway rat) (8)
Rnor\Arl3
12 of 13
Yes
Yes
Rnor\Arl2
2 of 13
No
No
Rnor\Arfrp1
1 of 13
No
No
Rnor\Arl1
1 of 13
No
No
Rnor\Arl6
1 of 13
No
No
Rnor\Arl11
1 of 13
No
No
Rnor\Arl13b
1 of 13
No
Yes
Rnor\Arl14
1 of 13
No
No
Xenopus tropicalis (Western clawed frog) (11)
Xtro\arl3
8 of 12
Yes
Yes
Xtro\arl3l2
7 of 12
No
Yes
Xtro\arl2
2 of 12
No
No
Xtro\arl1
1 of 12
No
No
Xtro\arl6
1 of 12
No
No
Xtro\arl11
1 of 12
No
No
Xtro\arl11
1 of 12
No
No
Xtro\arl14
1 of 12
No
No
Xtro\LOC100170433
1 of 12
No
Yes
Xtro\LOC101734701
1 of 12
No
Yes
Xtro\LOC101734763
1 of 12
No
Yes
Danio rerio (Zebrafish) (13)
Drer\arl3b
13 of 15
Yes
Yes
Drer\arl3l1
9 of 15
No
Yes
Drer\arl3l2
9 of 15
No
Yes
Drer\arl3a
6 of 15
No
Yes
Drer\arl2
2 of 15
No
No
Drer\arfrp1
1 of 15
No
No
Drer\arl1
1 of 15
No
No
Drer\arl6
1 of 15
No
No
Drer\arl11
1 of 15
No
No
Drer\arl13a
1 of 15
No
Yes
Drer\arl13b
1 of 15
No
Yes
Drer\arl14
1 of 15
No
No
Drer\npm3
1 of 15
No
No
Caenorhabditis elegans (Nematode, roundworm) (6)
Cele\arl-3
13 of 15
Yes
Yes
Cele\arl-13
2 of 15
No
Yes
Cele\evl-20
2 of 15
No
No
Cele\arl-1
1 of 15
No
No
Cele\arl-6
1 of 15
No
No
Cele\Y54E10BR.2
1 of 15
No
No
Arabidopsis thaliana (thale-cress) (7)
Atha\ARF3
1 of 9
Yes
No
Atha\ARFB1B
1 of 9
Yes
Yes
Atha\ARFB1C
1 of 9
Yes
Yes
Atha\ARFD1A
1 of 9
Yes
Yes
Atha\ARFD1B
1 of 9
Yes
Yes
Atha\GB1
1 of 9
Yes
No
Atha\TTN5
1 of 9
Yes
No
Saccharomyces cerevisiae (Brewer's yeast) (0)
No records found.
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\alp41
1 of 12
Yes
No
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190GFI )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00011124
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00010513
Drosophila simulans
Dsim\GD18491
Drosophila sechellia
Dsec\GM23682
Drosophila erecta
Dere\GG12548
Drosophila yakuba
Dyak\GE24074
Drosophila ananassae
Dana\GF16955
Drosophila pseudoobscura pseudoobscura
Dpse\GA19685
Drosophila persimilis
Dper\GL23729
Drosophila willistoni
Dwil\GK13011
Drosophila virilis
Dvir\GJ24091
Drosophila mojavensis
Dmoj\GI22038
Drosophila grimshawi
Dgri\GH19902
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG09150BXL )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17016694
Musca domestica
House fly
Mdoa\17012784
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_13468
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_04314
Mayetiola destructor
Hessian fly
Mdes\Mdes000390
Mayetiola destructor
Hessian fly
Mdes\Mdes000333
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL004568
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL003281
Anopheles darlingi
American malaria mosquito
Adar\ADAC008314
Anopheles darlingi
American malaria mosquito
Adar\ADAC009377
Anopheles gambiae
Malaria mosquito
Agam\AGAP005267
Anopheles gambiae
Malaria mosquito
Agam\AGAP004496
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ001058
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ012995
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0DPA )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA000786
Bombyx mori
Silkmoth
Bmor\BGIBMGA000034
Danaus plexippus
Monarch butterfly
Dple\DPOGS212839-PA
Danaus plexippus
Monarch butterfly
Dple\DPOGS210263-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL004483
Heliconius melpomene
Postman butterfly
Hmel\HMEL008623
Apis florea
Little honeybee
Aflo\3824172628
Apis florea
Little honeybee
Aflo\2200188068
Apis mellifera
Western honey bee
Amel\LOC411085
Apis mellifera
Western honey bee
Amel\LOC408522
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP16264
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP25213
Bombus terrestris
Buff-tailed bumblebee
Bter\15216272
Bombus terrestris
Buff-tailed bumblebee
Bter\15205633
Linepithema humile
Argentine ant
Lhum\LH14125
Linepithema humile
Argentine ant
Lhum\LH18290
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001a0b
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:001c86
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG011685
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG002288
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_12504
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_12853
Tribolium castaneum
Red flour beetle
Tcas\TC010041
Tribolium castaneum
Red flour beetle
Tcas\TC012465
Pediculus humanus
Human body louse
Phum\PHUM591560
Pediculus humanus
Human body louse
Phum\PHUM461000
Rhodnius prolixus
Kissing bug
Rpro\RPRC004646
Rhodnius prolixus
Kissing bug
Rpro\RPRC004943
Cimex lectularius
Bed bug
Clec\CLEC003056
Cimex lectularius
Bed bug
Clec\CLEC001730
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI003701
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI006316
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_14500
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_07168
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0FX0 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR013065
Strigamia maritima
European centipede
Smar\SMAR000806
Ixodes scapularis
Black-legged tick
Isca\ISCW018586
Ixodes scapularis
Black-legged tick
Isca\ISCW023258
Stegodyphus mimosarum
African social velvet spider
Smim\KFM81939.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur01g00440
Tetranychus urticae
Two-spotted spider mite
Turt\tetur15g02040
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_129159
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_130078
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0O6V )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Arl3
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Arl2
Ciona intestinalis
Vase tunicate
Cint\LOC100178355
Ciona intestinalis
Vase tunicate
Cint\LOC100176430
Gallus gallus
Domestic chicken
Ggal\ENSGALG00000003134
Gallus gallus
Domestic chicken
Ggal\ARL3
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (14)
Gene Symbol
Score
Source
Compara
eggNOG
Homologene
Inparanoid
Isobase
OrthoDB
OrthoFinder
orthoMCL
Panther
RoundUp
Alignment
Arl2
4 of 10
Arfrp1
2 of 10
Arl1
2 of 10
Arl6
2 of 10
Arf51F
1 of 10
Arf79F
1 of 10
Arf102F
1 of 10
Arl4
1 of 10
Arl5
1 of 10
Arl8
1 of 10
CG11356
1 of 10
CG13692
1 of 10
CG17819
1 of 10
Sar1
1 of 10
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 1 )
    Human Ortholog
    Disease
    Evidence
    References
    ARL3; ADP ribosylation factor like GTPase 3
    model of  retinitis pigmentosa 83
    IEA
    (FlyBase, 2019-)
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    ARL3; ADP ribosylation factor like GTPase 3
    12 of 15
    604695
    Functional Complementation Data
    Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
    Interactions
    Summary of Physical Interactions
    esyN Network Diagram
    Show neighbor-neighbor interactions:
    Select Layout:
    Legend:
    Protein
    RNA
    Selected Interactor(s)
    Interactions Browser
    View in Interactions Browser
    Please see the Physical Interaction reports below for full details
    protein-protein
    Physical Interaction
    Assay
    References
    dnd - PrBP
    two hybrid
    (Hu et al., 2017.6.13)
    Summary of Genetic Interactions
    esyN Network Diagram
    esyN Network Key:
    Suppression
    Enhancement
    View in Interactions Browser
    Please look at the allele data for full details of the genetic interactions
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    dnd
    suppressible
    Rab39
    (Caviglia et al., 2016)
    dnd
    enhanceable
    Sec5
    (Kakihara et al., 2008)
    dnd
    enhanceable
    stac
    (Caviglia et al., 2016)
    dnd
    suppressible
    stac
    (Caviglia et al., 2016)
    Starting gene(s)
    Interaction type
    Interacting gene(s)
    Reference
    Sec5
    enhanceable
    dnd
    (Kakihara et al., 2008)
    External Data
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    MIST (genetic) - An integrated Molecular Interaction Database
    Pathways
    Signaling Pathways (FlyBase)
    Metabolic Pathways
    External Data
    Linkouts
    Genomic Location and Detailed Mapping Data
    Chromosome (arm)
    3R
    Recombination map
    3-73
    Cytogenetic map
    93F14-93F14
    Sequence location
    FlyBase Computed Cytological Location
    Cytogenetic map
    Evidence for location
    93F14-93F14
    Limits computationally determined from genome sequence between P{PZ}tsl00617 and P{lacW}howj5B5&P{EP}EP738
    Experimentally Determined Cytological Location
    Cytogenetic map
    Notes
    References
    Experimentally Determined Recombination Data
    Location

    3-73

    (FlyBase, 2016)

    3-75.7

    (Comeron et al., 2012)
    Left of (cM)
    Right of (cM)
    Notes
    Stocks and Reagents
    Stocks (5)
    Genomic Clones (20)
    cDNA Clones (5)
     

    Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

    cDNA clones, fully sequenced
    BDGP DGC clones
    Other clones
    Drosophila Genomics Resource Center cDNA clones

    For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

    cDNA Clones, End Sequenced (ESTs)
    BDGP DGC clones
    Other clones
    RNAi and Array Information
    Linkouts
    DRSC - Results frm RNAi screens
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    Antibody Information
    Laboratory Generated Antibodies
     

    polyclonal

    (Kakihara et al., 2008, Jiang et al., 2007)
    Commercially Available Antibodies
     
    Other Information
    Relationship to Other Genes
    Source for database identify of

    Source for identity of: dnd CG6560

    (Jiang et al., 2007)
    Source for database merge of
    Additional comments

    FlyBase curator comment: the insertion in the "d10234" Exelixis line (P{XP}CG6678d10234) was originally assigned to the CG6560 gene in FBrf0179797, resulting in the "CG6560d10234" (FBal0161143) allele. However, FBrf0184340 shows that the insertion is actually within CG6678.

    (Bloomington Drosophila Stock Center, 2004.11.6)
    Other Comments
    Origin and Etymology
    Discoverer
    Etymology
    Identification
    External Crossreferences and Linkouts ( 33 )
    Sequence Crossreferences
    NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
    GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
    GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
    RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
    UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
    Other crossreferences
    BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
    Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
    DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
    EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
    Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
    FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
    FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
    Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns
    Flygut - An atlas of the Drosophila adult midgut
    GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
    iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
    InterPro - A database of protein families, domains and functional sites
    KEGG Genes - Molecular building blocks of life in the genomic space.
    MARRVEL_MODEL - MARRVEL (model organism gene)
    modMine - A data warehouse for the modENCODE project
    Linkouts
    DroID - A comprehensive database of gene and protein interactions.
    DRSC - Results frm RNAi screens
    FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
    FlyMine - An integrated database for Drosophila genomics
    MIST (genetic) - An integrated Molecular Interaction Database
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