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Gene Dmel\Pebp1

General Information
Symbol	Dmel\Pebp1	Species	D. melanogaster
Name	Phosphatidylethanolamine-binding protein 1	Annotation symbol	CG18594
Feature type	protein_coding_gene	FlyBase ID	FBgn0038973
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	94A16-94A16	Sequence location	3R:18,291,756..18,292,401 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Phosphatidylethanolamine-binding protein 1 is referred to in FlyBase by the symbol Dmel\Pebp1 (CG18594, FBgn0038973). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: regulation of antimicrobial humoral response; defense response to Gram-positive bacterium; defense response to Gram-negative bacterium. 3 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Phosphatidylethanolamine-binding protein PEBP. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very low expression. Peak expression observed during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult hindgut. Comments on Affy2 ProbeSet: ProbeSet 1624979_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG18594. Gene sequence location is 3R:18291756..18292401.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 94A16-94A16   Limits computationally determined from genome sequence between P{PZ}l(3)rQ178rQ178 and P{lacW}Dph5L4910
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Pebp1 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.43 Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Pebp1-RA FBtr0084255  NM_142794   646   176
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Pebp1-PA   FBpp0083648   19.6   176   5.81     NP_651051   AAF56004
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Phosphatidylethanolamine-binding protein PEBP (IPR008914)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56004   AI258700   AI297730   AY119094 AAM50954   AY232115   CO269837   CO300258   CO326488   EC082643   EC234639   EC257678   EV576586   EV578472   EV582971   EV587987   GH943576   GH943966   GH944088   GH944961   GH945652   GH946157   GH947812   GH948330   GH948755   GH948885   GH951049   GH951288   GH952590   GH952735   GH954401   GH954813   GH959787   GH960034   GH960633   GH961994   GH963735   GH968326   GH968559   GH969637   GH970168   GH970351   GH973533   GH974278   GH975257   GH978617   GH981312   GH981326   GH982760   GH982999   GH984119
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VD01
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   gastric caecum   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval/adult midgut. Expression at moderate levels in the following post-embryonic organs or tissues: adult hindgut. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut    5994.8 Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut    5977.5 Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut  (5994.8) Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut  (5977.5) Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut  (5994.8) Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut  (5977.5) Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut    5994.8 Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut    5977.5 Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut    5994.8 Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut    5977.5 Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut  (5994.8) Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut  (5977.5) Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut  (5994.8) Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut  (5977.5) Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    9 Larval Midgut    5994.8 Larval Hindgut    44.2 Larval Malpighian Tubules    19.1 Larval Fat Body    12.3 Larval Salivary Gland    12 Larval Trachea    136.075 Larval Carcass    15.025 Adult Head    6.6 Adult Eye    19.75 Adult Brain    1.9 Adult Thoracic-Abdominal Ganglion    4.1 Adult Crop    5 Adult Midgut    5977.5 Adult Hindgut    236.4 Adult Malpighian Tubules    101.1 Adult Fat Body    19.4 Adult Salivary Gland    17.2 Adult Heart    16.1 Adult VirginFemale Spermatheca    15.4 Adult InseminatedFemale Spermatheca    11.2 Adult Ovary    1.4 Adult Testis    2 Adult Male Accessory Gland    8.8 Adult Carcass    21.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    6.6   NA  Eye    no informative data   NA  Brain    1.9   9  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    4.1   NA  Crop    5   5994.8  Midgut    5977.5   no informative data  Hindgut    236.4   no informative data  Malpighian Tubules    no informative data   no informative data  Fat Body    no informative data   no informative data  Salivary Gland    no informative data   NA  Heart    no informative data   no informative data  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    1.4   NA  Testis    2   NA  Male Accessory Gland    8.8   no informative data  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    244 digestive system, 1-day adult    3026 digestive system, 4-day adult    2301 digestive system, 20-day adult    2091 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (85) central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (244) digestive system, 1-day adult  (3026) digestive system, 4-day adult  (2301) digestive system, 20-day adult  (2091) fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult  (36) carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (244) digestive system, 1-day adult  (3026) digestive system, 4-day adult  (2301) digestive system, 20-day adult  (2091) fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    244 digestive system, 1-day adult    3026 digestive system, 4-day adult    2301 digestive system, 20-day adult    2091 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    244 digestive system, 1-day adult    3026 digestive system, 4-day adult    2301 digestive system, 20-day adult    2091 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (85) central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (244) digestive system, 1-day adult  (3026) digestive system, 4-day adult  (2301) digestive system, 20-day adult  (2091) fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult  (36) carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering  (244) digestive system, 1-day adult  (3026) digestive system, 4-day adult  (2301) digestive system, 20-day adult  (2091) fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    85 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    2 head, virgin 4-day female    0 head, virgin 20-day female    1 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    1 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    13 salivary gland, white prepupae    5 digestive system, larvae L3 wandering    244 digestive system, 1-day adult    3026 digestive system, 4-day adult    2301 digestive system, 20-day adult    2091 fat body, larvae L3 wandering    1 fat body, white prepupae    1 fat body, pupae P8    18 carcass, larvae L3 wandering    1 carcass, 1-day adult    36 carcass, 4-day adult    11 carcass, 20-day adult    21 ovary, virgin 4-day female    1 ovary, mated 4-day female    1 testis, mated 4-day male    5 accessory gland, mated 4-day male    12 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of very low expression. Peak expression observed during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr    111 embryo 18-20hr    339 embryo 20-22hr    828 embryo 22-24hr    653 larva L1    1685 larva L2    1539 larva L3 12hr old    1783 larva L3 puffstage 1-2    899 larva L3 puffstage 3-6    118 larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day    440 adult male 05day    224 adult male 30day    235 adult female 01day    1217 adult female 05day    512 adult female 30day    731 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr  (111) embryo 18-20hr  (339) embryo 20-22hr  (828) embryo 22-24hr  (653) larva L1  (1685) larva L2  (1539) larva L3 12hr old  (1783) larva L3 puffstage 1-2  (899) larva L3 puffstage 3-6  (118) larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day  (440) adult male 05day  (224) adult male 30day  (235) adult female 01day  (1217) adult female 05day  (512) adult female 30day  (731) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr  (111) embryo 18-20hr  (339) embryo 20-22hr  (828) embryo 22-24hr  (653) larva L1  (1685) larva L2  (1539) larva L3 12hr old  (1783) larva L3 puffstage 1-2  (899) larva L3 puffstage 3-6  (118) larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day  (440) adult male 05day  (224) adult male 30day  (235) adult female 01day  (1217) adult female 05day  (512) adult female 30day  (731) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr    111 embryo 18-20hr    339 embryo 20-22hr    828 embryo 22-24hr    653 larva L1    1685 larva L2    1539 larva L3 12hr old    1783 larva L3 puffstage 1-2    899 larva L3 puffstage 3-6    118 larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day    440 adult male 05day    224 adult male 30day    235 adult female 01day    1217 adult female 05day    512 adult female 30day    731 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr    111 embryo 18-20hr    339 embryo 20-22hr    828 embryo 22-24hr    653 larva L1    1685 larva L2    1539 larva L3 12hr old    1783 larva L3 puffstage 1-2    899 larva L3 puffstage 3-6    118 larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day    440 adult male 05day    224 adult male 30day    235 adult female 01day    1217 adult female 05day    512 adult female 30day    731 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr  (111) embryo 18-20hr  (339) embryo 20-22hr  (828) embryo 22-24hr  (653) larva L1  (1685) larva L2  (1539) larva L3 12hr old  (1783) larva L3 puffstage 1-2  (899) larva L3 puffstage 3-6  (118) larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day  (440) adult male 05day  (224) adult male 30day  (235) adult female 01day  (1217) adult female 05day  (512) adult female 30day  (731) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr  111 embryo 18-20hr  (339) embryo 20-22hr  (828) embryo 22-24hr  (653) larva L1  (1685) larva L2  (1539) larva L3 12hr old  (1783) larva L3 puffstage 1-2  (899) larva L3 puffstage 3-6  118 larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day  (440) adult male 05day  (224) adult male 30day  (235) adult female 01day  (1217) adult female 05day  (512) adult female 30day  (731) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    2 embryo 04-06hr    3 embryo 06-08hr    2 embryo 08-10hr    2 embryo 10-12hr    2 embryo 12-14hr    2 embryo 14-16hr    21 embryo 16-18hr    111 embryo 18-20hr    339 embryo 20-22hr    828 embryo 22-24hr    653 larva L1    1685 larva L2    1539 larva L3 12hr old    1783 larva L3 puffstage 1-2    899 larva L3 puffstage 3-6    118 larva L3 puffstage 7-9    21 white prepupae new    9 white prepupae 12hr    5 white prepupae 24hr    7 pupae 2d postWPP    4 pupae 3d postWPP    1 pupae 4d postWPP    22 adult male 01day    440 adult male 05day    224 adult male 30day    235 adult female 01day    1217 adult female 05day    512 adult female 30day    731 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    3 Schneider line 2 Sg4    1 embryonic 1182-4H    1 embryonic GM2    2 embryonic Kc167    2 embryonic S1    0 embryonic S3    1 leg disc CME L1    1 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    4 wing disc ML-DmD16-c3    1 wing disc ML-DmD21    2 wing disc ML-DmD32    2 haltere disc ML-DmD17-c3    1 eye-antennal disc ML-DmD11    1 antennal disc ML-DmD20-c5    1 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    2 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    3 ovary fGS/OSS    1 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult    697 Cadmium 50 mM 6 hrs, larvae L3    1537 Cadmium 50 mM 12 hrs, larvae L3    444 Cadmium 50 mM 48 hrs, 4-day adult    774 Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3    593 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    592 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3    1124 Ethanol 10% 3 hrs, larvae L3    1302 Caffeine 1.5 mg/ml 4 hrs, larvae L3    737 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    1475 Rotenone 8 μg 12 hrs, larvae L3    1642 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (61) cold shock, 4-day adult  (79) heat shock, 4-day adult  (697) Cadmium 50 mM 6 hrs, larvae L3  (1537) Cadmium 50 mM 12 hrs, larvae L3  (444) Cadmium 50 mM 48 hrs, 4-day adult  (774) Cadmium 100 mM 48 hrs, 4-day adult  (51) Copper 0.5 mM 12 hrs, larvae L3  (593) Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3  (592) Zinc 4.5 mM 48 hrs, 4-day adult  (50) Ethanol 2.5% 3 hrs, larvae L3  (88) Ethanol 5% 3 hrs, larvae L3  (1124) Ethanol 10% 3 hrs, larvae L3  (1302) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (737) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult  (77) Paraquat 5 mM 48 hrs, 4-day adult  (31) Paraquat 10 mM 48 hrs, 4-day adult  (29) Rotenone 2 μg 12 hrs, larvae L3  (1475) Rotenone 8 μg 12 hrs, larvae L3  (1642) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult  (697) Cadmium 50 mM 6 hrs, larvae L3  (1537) Cadmium 50 mM 12 hrs, larvae L3  (444) Cadmium 50 mM 48 hrs, 4-day adult  (774) Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3  (593) Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3  (592) Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3  (1124) Ethanol 10% 3 hrs, larvae L3  (1302) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (737) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3  (1475) Rotenone 8 μg 12 hrs, larvae L3  (1642) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult    697 Cadmium 50 mM 6 hrs, larvae L3    1537 Cadmium 50 mM 12 hrs, larvae L3    444 Cadmium 50 mM 48 hrs, 4-day adult    774 Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3    593 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    592 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3    1124 Ethanol 10% 3 hrs, larvae L3    1302 Caffeine 1.5 mg/ml 4 hrs, larvae L3    737 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    1475 Rotenone 8 μg 12 hrs, larvae L3    1642 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult    697 Cadmium 50 mM 6 hrs, larvae L3    1537 Cadmium 50 mM 12 hrs, larvae L3    444 Cadmium 50 mM 48 hrs, 4-day adult    774 Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3    593 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    592 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3    1124 Ethanol 10% 3 hrs, larvae L3    1302 Caffeine 1.5 mg/ml 4 hrs, larvae L3    737 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    1475 Rotenone 8 μg 12 hrs, larvae L3    1642 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (61) cold shock, 4-day adult  (79) heat shock, 4-day adult  (697) Cadmium 50 mM 6 hrs, larvae L3  (1537) Cadmium 50 mM 12 hrs, larvae L3  (444) Cadmium 50 mM 48 hrs, 4-day adult  (774) Cadmium 100 mM 48 hrs, 4-day adult  (51) Copper 0.5 mM 12 hrs, larvae L3  (593) Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3  (592) Zinc 4.5 mM 48 hrs, 4-day adult  (50) Ethanol 2.5% 3 hrs, larvae L3  (88) Ethanol 5% 3 hrs, larvae L3  (1124) Ethanol 10% 3 hrs, larvae L3  (1302) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (737) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult  (77) Paraquat 5 mM 48 hrs, 4-day adult  31 Paraquat 10 mM 48 hrs, 4-day adult  29 Rotenone 2 μg 12 hrs, larvae L3  (1475) Rotenone 8 μg 12 hrs, larvae L3  (1642) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult  (697) Cadmium 50 mM 6 hrs, larvae L3  (1537) Cadmium 50 mM 12 hrs, larvae L3  (444) Cadmium 50 mM 48 hrs, 4-day adult  (774) Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3  (593) Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3  (592) Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3  (1124) Ethanol 10% 3 hrs, larvae L3  (1302) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (737) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3  (1475) Rotenone 8 μg 12 hrs, larvae L3  (1642) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    61 cold shock, 4-day adult    79 heat shock, 4-day adult    697 Cadmium 50 mM 6 hrs, larvae L3    1537 Cadmium 50 mM 12 hrs, larvae L3    444 Cadmium 50 mM 48 hrs, 4-day adult    774 Cadmium 100 mM 48 hrs, 4-day adult    51 Copper 0.5 mM 12 hrs, larvae L3    593 Copper 15 mM 48 hrs, 4-day adult    16 Zinc 5 mM 12 hrs, larvae L3    592 Zinc 4.5 mM 48 hrs, 4-day adult    50 Ethanol 2.5% 3 hrs, larvae L3    88 Ethanol 5% 3 hrs, larvae L3    1124 Ethanol 10% 3 hrs, larvae L3    1302 Caffeine 1.5 mg/ml 4 hrs, larvae L3    737 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    5 Caffeine 25 mg/ml 48 hrs, 4-day adult    77 Paraquat 5 mM 48 hrs, 4-day adult    31 Paraquat 10 mM 48 hrs, 4-day adult    29 Rotenone 2 μg 12 hrs, larvae L3    1475 Rotenone 8 μg 12 hrs, larvae L3    1642 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_16
External Data & Images
Linkouts	BDGP expression data • LP12095 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038973 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18594-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Pebp1 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Pebp1GD9612 Other Phenotypes Allele immune response defective, with Scer\GAL4da.G32 Pebp1Scer\UAS.cRa Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Pebp1 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Pebp1 Class Mutagen Stocks Known lesion Pebp1GD9612 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Pebp1KK110323 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Pebp1Scer\UAS.cRa in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6191 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{UAS-Pebp1.R} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
defense response to Gram-negative bacterium inferred from mutant phenotype (Reumer et al., 2009) defense response to Gram-positive bacterium inferred from mutant phenotype (Reumer et al., 2009) regulation of antimicrobial humoral response inferred from mutant phenotype (Reumer et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Pebp1 - AP-2α anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Atx2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG11505 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG14434 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) Pebp1 - CG15014 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG15735 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG15784 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG1785 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG4612 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG5804 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CG7593 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Pebp1 - CG7878 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - CkIIα anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Imp anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Jupiter anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - LanB1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - NHP2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Ns1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Ote anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - RpL35A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - RpL7-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - RpLP0 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - RpS19a anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Rpb5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - SF1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - SmG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Trax anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Trxr-2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - Zn72D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - bocksbeutel anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - eIF4AIII anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpL13 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpL43 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpL44 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpL50 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpL52 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mRpS24 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - mmy anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - spoon anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - trsn anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - tsu anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) Pebp1 - tyf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Pebp1 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67599 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038973 DroID - A comprehensive database of gene and protein interactions. • FBgn0038973 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42644
Orthologs
OrthoDB Orthologs (26) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6NS3Z2 Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search EOG6DVJFV
Orthologs in Drosophila Species (EOG6NS3Z2)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Pebp1     Drosophila simulans   Dsim\GD20954 Y   Drosophila sechellia   Dsec\GM26437 Y   Drosophila erecta   Dere\GG11139 Y   Drosophila yakuba   Dyak\GE10305 Y   Drosophila ananassae   Dana\GF23379 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15006 Y   Drosophila willistoni   Dwil\GK11699     Drosophila willistoni   Dwil\GK11701     Drosophila willistoni   Dwil\GK11698 Y   Drosophila virilis   Dvir\GJ14338 Y   Drosophila mojavensis   Dmoj\GI21978 Y   Drosophila grimshawi   Dgri\GH22236 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (EOG6DVJFV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\F40A3.3 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013585gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013584gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_027185gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001716gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001151gn Y Danio rerio Zebrafish  Drer\pbp Y Xenopus tropicalis Western clawed frog  Xtro\pebp1 Y Gallus gallus Domestic chicken  Ggal\PEBP1 Y Mus musculus House mouse  Mmus\Pebp1 Y Mus musculus House mouse  Mmus\Pbp2 Y Rattus norvegicus Norway rat  Rnor\Pebp1 Y Homo sapiens Human  Hsap\PEBP1 Y
Human Orthologs (1)
Gene OMIM HGNC Hsap\PEBP1
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD20954 Drosophila sechellia Dsec\GM26437 Drosophila erecta Dere\GG11139 Drosophila yakuba Dyak\GE10305 Drosophila ananassae Dana\GF23379 Drosophila pseudoobscura pseudoobscura Dpse\GA15006 Drosophila willistoni Dwil\GK11698 Drosophila virilis Dvir\GJ14338 Drosophila mojavensis Dmoj\GI21978 Drosophila grimshawi Dgri\GH22236
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	35835 w*; P{UAS-Pebp1.R}3/TM3, Ser1
VDRC	v101957 P{KK110323}VIE-260B v20650 w1118; P{GD9612}v20650/TM3
Genomic Clones ( 2 )
	BACR30J14 BACR48C17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 49 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LP12095
Other clones	DPiM_LP12095 yak-ad_CG18594
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP01953
Other clones	57389 CK01.125B.F6 Dmel_dig_003356_0628_1895 Dmel_dig_017999_0687_0852 Dmel_dig_019731_0709_3603 Dmel_neb_015033_0125_1592 EC257678 EK096042 EK177758 EP04012 RP004108443 RP004115026 RP004140164 RP004142146 RP004159814 RP004161196 RP004193076 RP004193942 RP004198957 RP004201903 RP004206684 RP004214153 RP004217909 RP004221937 RP004228013 RP004232529 RP004232661 RP004234139 RP004244010 RP004244098 RP004249276 RP004258660 RP004347163 RP004366828 RP004380024 RP004429209 RP004431246 RP004438958 RP004452755 RP004456646 RP004512178 RP004528841 RP004543675 RP004550627 RP004552617
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0038973 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42644
Antibody Information
	polyclonal (Rautureau et al., 2009)
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Pebp1 CG18594 (Reumer et al., 2009)
Source for database merge of	Source for merge of: CG18594 BcDNA:LP12095 (FlyBase, 1996-)
Additional comments	Source for merge of CG18594 BcDNA:LP12095 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142794 RefSeq (Proteins) • NP_651051 DDBJ / EMBL / GenBank • AAF56004 AAM50954 AI297730 AY119094 Entrez Gene - A searchable database of RefSeq genes. • 42644 UniProtKB/TrEMBL • Q9VD01
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Phosphatidylethanolamine-binding protein PEBP (IPR008914) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LP12095
Linkouts
	BioGRID - A database of protein and genetic interactions • 67599 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0038973 DroID - A comprehensive database of gene and protein interactions. • FBgn0038973 DRSC - Results from RNAi screens. • FBgn0038973 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0038973 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG18594-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0038973 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42644 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42644 modMine - Data generated by the modENCODE project. • FBgn0038973
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	BcDNA:LP12095   CG18594 (Chamilos et al., 2008, Reumer et al., 2009, Rautureau et al., 2009, Rautureau et al., 2006, Keleman et al., 2009.8.5, Carpenter et al., 2009) Pebp1   PEBP1 (Reumer et al., 2009) T2 (Vierstraete et al., 2004)
Name Synonym	Phosphatidylethanolamine-binding protein 1
Secondary FlyBase IDs
	FBgn0063081
References ( 19 )
Research paper	Carpenter et al., 2009, PLoS ONE 4(8): e6838 The transcriptional response of Drosophila melanogaster to infection with the sigma virus (Rhabdoviridae). [FBrf0208625] Rautureau et al., 2009, Arch. Insect Biochem. Physiol. 71(2): 55--69 Expression and characterization of the PEBP homolog genes from Drosophila. [FBrf0208002] Reumer et al., 2009, Dev. Comp. Immunol. 33(11): 1186--1195 Unraveling the protective effect of a Drosophila phosphatidylethanolamine-binding protein upon bacterial infection by means of proteomics. [FBrf0208656] Chamilos et al., 2008, Proc. Natl. Acad. Sci. U.S.A. 105(27): 9367--9372 Drosophila melanogaster as a model host to dissect the immunopathogenesis of zygomycosis. [FBrf0207383] Rautureau et al., 2006, Protein Expr. Purif. 48(1): 90--97 Cloning, high yield over-expression, purification, and characterization of CG18594, a new PEBP/RKIP family member from Drosophila melanogaster. [FBrf0193724] Vierstraete et al., 2004, Proc. Natl. Acad. Sci. U.S.A. 101(2): 470--475 A proteomic approach for the analysis of instantly released wound and immune proteins in Drosophila melanogaster hemolymph. [FBrf0168012] Vierstraete et al., 2004, Biochem. Biophys. Res. Commun. 317(4): 1052--1060 The instantly released Drosophila immune proteome is infection-specific. [FBrf0174382] de Morais Guedes et al., 2003, Biochem. Biophys. Res. Commun. 312(3): 545--554 Drosophila melanogaster larval hemolymph protein mapping. [FBrf0167337]
Supplementary material	Guruharsha et al., 2011, Cell 147(3): Table S3. [FBrf0218395] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Mintseris et al., 2009.11.23, DPiM: the Drosophila Protein Interaction Mapping project DPiM: the Drosophila Protein Interaction Mapping project [FBrf0209452] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Website	Fisher et al., 2012, BDGP insitu homepage BDGP insitu homepage [FBrf0219073]