A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\CG5315

General Information
SymbolDmel\CG5315SpeciesD. melanogaster
NameAnnotation symbolCG5315
Feature typeprotein_coding_geneFlyBase IDFBgn0038984
Gene Model StatusCurrent Stock availability 5 publicly available
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map94B3-94B3Sequence location3R:18,369,415..18,373,567 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG5315 (FBgn0038984). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: hormone binding. Based on sequence similarity, it is predicted to be involved in the biological process: hormone-mediated signaling pathway; fatty acid oxidation. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Hly-III-related. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult spermathecae, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval hindgut, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1636967_a_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of CG5315. Gene sequence location is 3R:18369415..18373567.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2011_10
FB2012_01
Sequence features
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
94B3-94B3  
Limits computationally determined from genome sequence between P{PZ}l(3)rQ178rQ178 and P{lacW}Dph5L4910  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG5315 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0084284 FBtr0084283 FBtr0308848 FBtr0084282 FBpp0083677 FBpp0083675 FBpp0083676 FBpp0301003 FBti0047914 FBti0043981 FBti0126214_1 FBti0126214_2 FBti0130113 FBti0025594 FBti0052333 FBti0043219
Comments on Gene Model
Gene model reviewed during 5.40
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0084282
  2298
  444
FBtr0084284
  1618
  362
FBtr0084283
  2186
  444
FBtr0308848
 
  1874
  444
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0083675  
49.8  
444  
4.97  
FBpp0083677  
41.2  
362  
6.87  
FBpp0083676  
49.8  
444  
4.97  
FBpp0301003  
49.8  
444  
4.97  
 
 
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Hly-III-related (IPR004254)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG5315-RB CG5315-RC CG5315-RD CG5315-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0038984


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0038984
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0038984 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4037)
embryo 02-04hr
 (3073)
embryo 04-06hr
 (5627)
embryo 06-08hr
 (6120)
embryo 08-10hr
 (6199)
embryo 10-12hr
 (8208)
embryo 12-14hr
 (6477)
embryo 14-16hr
 (5340)
embryo 16-18hr
 (5231)
embryo 18-20hr
 (4343)
embryo 20-22hr
 (2659)
embryo 22-24hr
 (3384)
larva L1
 (2727)
larva L2
 (3308)
larva L3 12hr old
 (3320)
larva L3 puffstage 1-2
 (2896)
larva L3 puffstage 3-6
 (4002)
larva L3 puffstage 7-9
 (4847)
white prepupae new
 (5420)
white prepupae 12hr
 (5146)
white prepupae 24hr
 (3962)
pupae 2d postWPP
 (5647)
pupae 3d postWPP
 (4695)
pupae 4d postWPP
 (4078)
adult male 01day
 (8423)
adult male 05day
 (8602)
adult male 30day
 (7000)
adult female 01day
 (4906)
adult female 05day
 (5542)
adult female 30day
 (5115)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4037)
embryo 02-04hr
 (3073)
embryo 04-06hr
 (5627)
embryo 06-08hr
 (6120)
embryo 08-10hr
 (6199)
embryo 10-12hr
 (8208)
embryo 12-14hr
 (6477)
embryo 14-16hr
 (5340)
embryo 16-18hr
 (5231)
embryo 18-20hr
 (4343)
embryo 20-22hr
 (2659)
embryo 22-24hr
 (3384)
larva L1
 (2727)
larva L2
 (3308)
larva L3 12hr old
 (3320)
larva L3 puffstage 1-2
 (2896)
larva L3 puffstage 3-6
 (4002)
larva L3 puffstage 7-9
 (4847)
white prepupae new
 (5420)
white prepupae 12hr
 (5146)
white prepupae 24hr
 (3962)
pupae 2d postWPP
 (5647)
pupae 3d postWPP
 (4695)
pupae 4d postWPP
 (4078)
adult male 01day
 (8423)
adult male 05day
 (8602)
adult male 30day
 (7000)
adult female 01day
 (4906)
adult female 05day
 (5542)
adult female 30day
 (5115)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0038984 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4037)
embryo 02-04hr
 (3073)
embryo 04-06hr
 (5627)
embryo 06-08hr
 (6120)
embryo 08-10hr
 (6199)
embryo 10-12hr
 (8208)
embryo 12-14hr
 (6477)
embryo 14-16hr
 (5340)
embryo 16-18hr
 (5231)
embryo 18-20hr
 (4343)
embryo 20-22hr
 (2659)
embryo 22-24hr
 (3384)
larva L1
 (2727)
larva L2
 (3308)
larva L3 12hr old
 (3320)
larva L3 puffstage 1-2
 (2896)
larva L3 puffstage 3-6
 (4002)
larva L3 puffstage 7-9
 (4847)
white prepupae new
 (5420)
white prepupae 12hr
 (5146)
white prepupae 24hr
 (3962)
pupae 2d postWPP
 (5647)
pupae 3d postWPP
 (4695)
pupae 4d postWPP
 (4078)
adult male 01day
 (8423)
adult male 05day
 (8602)
adult male 30day
 (7000)
adult female 01day
 (4906)
adult female 05day
 (5542)
adult female 30day
 (5115)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (4037)
embryo 02-04hr
 (3073)
embryo 04-06hr
 (5627)
embryo 06-08hr
 (6120)
embryo 08-10hr
 (6199)
embryo 10-12hr
 (8208)
embryo 12-14hr
 (6477)
embryo 14-16hr
 (5340)
embryo 16-18hr
 (5231)
embryo 18-20hr
 (4343)
embryo 20-22hr
 (2659)
embryo 22-24hr
 (3384)
larva L1
 (2727)
larva L2
 (3308)
larva L3 12hr old
 (3320)
larva L3 puffstage 1-2
 (2896)
larva L3 puffstage 3-6
 (4002)
larva L3 puffstage 7-9
 (4847)
white prepupae new
 (5420)
white prepupae 12hr
 (5146)
white prepupae 24hr
 (3962)
pupae 2d postWPP
 (5647)
pupae 3d postWPP
 (4695)
pupae 4d postWPP
 (4078)
adult male 01day
 (8423)
adult male 05day
 (8602)
adult male 30day
 (7000)
adult female 01day
 (4906)
adult female 05day
 (5542)
adult female 30day
 (5115)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 4037
embryo 02-04hr
 
 3073
embryo 04-06hr
 
 5627
embryo 06-08hr
 
 6120
embryo 08-10hr
 
 6199
embryo 10-12hr
 
 8208
embryo 12-14hr
 
 6477
embryo 14-16hr
 
 5340
embryo 16-18hr
 
 5231
embryo 18-20hr
 
 4343
embryo 20-22hr
 
 2659
embryo 22-24hr
 
 3384
larva L1
 
 2727
larva L2
 
 3308
larva L3 12hr old
 
 3320
larva L3 puffstage 1-2
 
 2896
larva L3 puffstage 3-6
 
 4002
larva L3 puffstage 7-9
 
 4847
white prepupae new
 
 5420
white prepupae 12hr
 
 5146
white prepupae 24hr
 
 3962
pupae 2d postWPP
 
 5647
pupae 3d postWPP
 
 4695
pupae 4d postWPP
 
 4078
adult male 01day
 
 8423
adult male 05day
 
 8602
adult male 30day
 
 7000
adult female 01day
 
 4906
adult female 05day
 
 5542
adult female 30day
 
 5115
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0038984


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0038984
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, larval/adult midgut, adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, adult spermathecae, adult male accessory gland, adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval hindgut, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0038984 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 
 2183.5
Adult Eye
 
 2811.925
Adult Brain
 
 1021.9
Adult Thoracic-Abdominal Ganglion
 
 1139.6
Adult Crop
 
 2719.1
Adult Midgut
 
 957.5
Adult Hindgut
 
 1990.9
Adult Malpighian Tubules
 
 551
Adult Fat Body
 
 3572.2
Adult Salivary Gland
 
 1225.3
Adult Heart
 
 3391.8
Adult VirginFemale Spermatheca
 
 4414.2
Adult InseminatedFemale Spermatheca
 
 3933.4
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 
 1042.6
Adult Carcass
 
 2573.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 (642.7)
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 (674)
Larval Fat Body
 (702)
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 (2183.5)
Adult Eye
 (2811.925)
Adult Brain
 (1021.9)
Adult Thoracic-Abdominal Ganglion
 (1139.6)
Adult Crop
 (2719.1)
Adult Midgut
 (957.5)
Adult Hindgut
 (1990.9)
Adult Malpighian Tubules
 (551)
Adult Fat Body
 (3572.2)
Adult Salivary Gland
 (1225.3)
Adult Heart
 (3391.8)
Adult VirginFemale Spermatheca
 (4414.2)
Adult InseminatedFemale Spermatheca
 (3933.4)
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 (1042.6)
Adult Carcass
 (2573.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 (2183.5)
Adult Eye
 (2811.925)
Adult Brain
 1021.9
Adult Thoracic-Abdominal Ganglion
 (1139.6)
Adult Crop
 (2719.1)
Adult Midgut
 
 957.5
Adult Hindgut
 (1990.9)
Adult Malpighian Tubules
 
 551
Adult Fat Body
 (3572.2)
Adult Salivary Gland
 (1225.3)
Adult Heart
 (3391.8)
Adult VirginFemale Spermatheca
 (4414.2)
Adult InseminatedFemale Spermatheca
 (3933.4)
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 1042.6
Adult Carcass
 (2573.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 
 2183.5
Adult Eye
 
 2811.925
Adult Brain
 
 1021.9
Adult Thoracic-Abdominal Ganglion
 
 1139.6
Adult Crop
 
 2719.1
Adult Midgut
 
 957.5
Adult Hindgut
 
 1990.9
Adult Malpighian Tubules
 
 551
Adult Fat Body
 
 3572.2
Adult Salivary Gland
 
 1225.3
Adult Heart
 
 3391.8
Adult VirginFemale Spermatheca
 
 4414.2
Adult InseminatedFemale Spermatheca
 
 3933.4
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 
 1042.6
Adult Carcass
 
 2573.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0038984 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 
 2183.5
Adult Eye
 
 2811.925
Adult Brain
 
 1021.9
Adult Thoracic-Abdominal Ganglion
 
 1139.6
Adult Crop
 
 2719.1
Adult Midgut
 
 957.5
Adult Hindgut
 
 1990.9
Adult Malpighian Tubules
 
 551
Adult Fat Body
 
 3572.2
Adult Salivary Gland
 
 1225.3
Adult Heart
 
 3391.8
Adult VirginFemale Spermatheca
 
 4414.2
Adult InseminatedFemale Spermatheca
 
 3933.4
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 
 1042.6
Adult Carcass
 
 2573.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 674
Larval Fat Body
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 (2183.5)
Adult Eye
 (2811.925)
Adult Brain
 (1021.9)
Adult Thoracic-Abdominal Ganglion
 (1139.6)
Adult Crop
 (2719.1)
Adult Midgut
 (957.5)
Adult Hindgut
 (1990.9)
Adult Malpighian Tubules
 551
Adult Fat Body
 (3572.2)
Adult Salivary Gland
 (1225.3)
Adult Heart
 (3391.8)
Adult VirginFemale Spermatheca
 (4414.2)
Adult InseminatedFemale Spermatheca
 (3933.4)
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 (1042.6)
Adult Carcass
 (2573.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 (2183.5)
Adult Eye
 (2811.925)
Adult Brain
 1021.9
Adult Thoracic-Abdominal Ganglion
 1139.6
Adult Crop
 (2719.1)
Adult Midgut
 
 957.5
Adult Hindgut
 (1990.9)
Adult Malpighian Tubules
 
 551
Adult Fat Body
 (3572.2)
Adult Salivary Gland
 1225.3
Adult Heart
 (3391.8)
Adult VirginFemale Spermatheca
 (4414.2)
Adult InseminatedFemale Spermatheca
 (3933.4)
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 1042.6
Adult Carcass
 (2573.9)
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 414.475
Larval Midgut
 
 642.7
Larval Hindgut
 
 427.6
Larval Malpighian Tubules
 
 674
Larval Fat Body
 
 702
Larval Salivary Gland
 
 386.3
Larval Trachea
 
 438.65
Larval Carcass
 
 272.975
Adult Head
 
 2183.5
Adult Eye
 
 2811.925
Adult Brain
 
 1021.9
Adult Thoracic-Abdominal Ganglion
 
 1139.6
Adult Crop
 
 2719.1
Adult Midgut
 
 957.5
Adult Hindgut
 
 1990.9
Adult Malpighian Tubules
 
 551
Adult Fat Body
 
 3572.2
Adult Salivary Gland
 
 1225.3
Adult Heart
 
 3391.8
Adult VirginFemale Spermatheca
 
 4414.2
Adult InseminatedFemale Spermatheca
 
 3933.4
Adult Ovary
 
 134.8
Adult Testis
 
 107.8
Adult Male Accessory Gland
 
 1042.6
Adult Carcass
 
 2573.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 2183.5
 
NA 
Eye
 
 2811.925
 
NA 
Brain
 
 1021.9
 
414.475 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 1139.6
 
NA 
Crop
 
 2719.1
 
642.7 
Midgut
 
 957.5
 
427.6 
Hindgut
 
 1990.9
 
674 
Malpighian Tubules
 
 551
 
702 
Fat Body
 
 3572.2
 
386.3 
Salivary Gland
 
 1225.3
 
NA 
Heart
 
 3391.8
 
438.65 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 4414.2
 
NA 
InseminatedFemale Spermatheca
 
 3933.4
 
NA 
Ovary
 
 134.8
 
NA 
Testis
 
 107.8
 
NA 
Male Accessory Gland
 
 1042.6
 
272.975 
Carcass
 
 2573.9

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 3 )
For All Classical Alleles Show

Allele of CG5315ClassMutagenStocksKnown lesion
CG5315c021501 --
CG5315f053951 --
CG5315G66411 --
hide Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG5315ClassMutagenStocksKnown lesion
CG5315GD31122 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
UAS construct
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap
miscellaneous insertions
insertion of mobile activating element
hide Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with UniProtKB:Q96A54
(assigned by UniProtKB)
Biological Process
CV term
References
inferred from sequence or structural similarity with UniProtKB:Q96A54
(assigned by UniProtKB)
inferred from sequence or structural similarity with UniProtKB:Q96A54
(assigned by UniProtKB)
Cellular Component
CV term
References
inferred from sequence or structural similarity with UniProtKB:Q96A54
(assigned by UniProtKB)
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
CG5315 allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 5 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 161 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Additional comments
hide Other Comments
The Hrp59 protein binds preferentially to a subset of mRNAs, including CG5315 mRNA.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Hly-III-related (IPR004254)
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 15 )
Research paper
Gan et al., 2010, Cell Res. 20(7): 763--783
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq. [FBrf0211191]
Szafer-Glusman et al., 2008, Curr. Biol. 18(18): 1426--1431
A role for very-long-chain fatty acids in furrow ingression during cytokinesis in Drosophila spermatocytes. [FBrf0206098]
Kiesler et al., 2005, J. Cell Biol. 168(7): 1013--1025
Hrp59, an hnRNP M protein in Chironomus and Drosophila, binds to exonic splicing enhancers and is required for expression of a subset of mRNAs. [FBrf0184063]
Supplementary material
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Giot et al., 2003, Science 302(5651):
Tables S1 to S7. [FBrf0166452]
Oh et al., 2003, Genetics 163(1):
Table S1. [FBrf0157097]
Personal communication to FlyBase
Bellen, 2010.7.14, BDGP_2010_0715.GenExel.xml
BDGP_2010_0715.GenExel.xml [FBrf0211255]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.
Exelixis CG deletion data. [FBrf0184335]
Protein sequence record
Swiss-Prot Project Members, 2004.3.15, UniProtKB: Q9VCY8
ADIPOR-like receptor CG5315. [FBrf0172751]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]