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Gene Dmel\CG13827

General Information
Symbol	Dmel\CG13827	Species	D. melanogaster
Name		Annotation symbol	CG13827
Feature type	protein_coding_gene	FlyBase ID	FBgn0039068
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	94E9-94E9	Sequence location	3R:19,084,091..19,086,324 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13827 (FBgn0039068). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: lateral inhibition. 9 alleles are reported. The phenotype of these alleles is annotated with: chaeta. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Peroxisomal biogenesis factor 11. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the larval period, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, larval/adult salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval/adult hindgut, adult heart, larval fat body, larval trachea, virgin spermatheca, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1631671_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13827. Gene sequence location is 3R:19084091..19086324.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA14677 BKN29249
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 94E9-94E9   Limits computationally determined from genome sequence between P{PZ}cnc03921 and P{PZ}l(3)0690606906
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13827 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13827-RA FBtr0084376  NM_142880   985   233 CG13827-RB FBtr0307596     909   234
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13827-PA   FBpp0083768   26.3   233   9.69     NP_651137   AAF56119 CG13827-PB   FBpp0300234   26.7   234   10.34
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Peroxisomal biogenesis factor 11 (IPR008733)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56119   AY113446 AAM29451   BI234725   CZ479225   CZ479226   CZ488388   GH875260
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8MZ03
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0039068    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0039068 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 06-18 hour embryonic stages, at stages throughout the larval period, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0039068 expression level Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (766) embryo 02-04hr  (648) embryo 04-06hr  (944) embryo 06-08hr  (960) embryo 08-10hr  (989) embryo 10-12hr  (1466) embryo 12-14hr  (1269) embryo 14-16hr  (2165) embryo 16-18hr  (1901) embryo 18-20hr  (960) embryo 20-22hr  (518) embryo 22-24hr  (644) larva L1  (929) larva L2  (1771) larva L3 12hr old  (2176) larva L3 puffstage 1-2  (1555) larva L3 puffstage 3-6  (1380) larva L3 puffstage 7-9  (1119) white prepupae new  (1409) white prepupae 12hr  (847) white prepupae 24hr  (948) pupae 2d postWPP  (1170) pupae 3d postWPP  (622) pupae 4d postWPP  (537) adult male 01day  (915) adult male 05day  (1201) adult male 30day  (1304) adult female 01day  (891) adult female 05day  (617) adult female 30day  (767) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr  1466 embryo 12-14hr    1269 embryo 14-16hr  (2165) embryo 16-18hr  (1901) embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2  (1771) larva L3 12hr old  (2176) larva L3 puffstage 1-2  (1555) larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new  1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0039068 expression level Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (766) embryo 02-04hr  (648) embryo 04-06hr  (944) embryo 06-08hr  (960) embryo 08-10hr  (989) embryo 10-12hr  (1466) embryo 12-14hr  (1269) embryo 14-16hr  (2165) embryo 16-18hr  (1901) embryo 18-20hr  (960) embryo 20-22hr  (518) embryo 22-24hr  (644) larva L1  (929) larva L2  (1771) larva L3 12hr old  (2176) larva L3 puffstage 1-2  (1555) larva L3 puffstage 3-6  (1380) larva L3 puffstage 7-9  (1119) white prepupae new  (1409) white prepupae 12hr  (847) white prepupae 24hr  (948) pupae 2d postWPP  (1170) pupae 3d postWPP  (622) pupae 4d postWPP  (537) adult male 01day  (915) adult male 05day  (1201) adult male 30day  (1304) adult female 01day  (891) adult female 05day  (617) adult female 30day  (767) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr  1466 embryo 12-14hr    1269 embryo 14-16hr  2165 embryo 16-18hr  1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2  1771 larva L3 12hr old  2176 larva L3 puffstage 1-2  1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new  1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    766 embryo 02-04hr    648 embryo 04-06hr    944 embryo 06-08hr    960 embryo 08-10hr    989 embryo 10-12hr    1466 embryo 12-14hr    1269 embryo 14-16hr    2165 embryo 16-18hr    1901 embryo 18-20hr    960 embryo 20-22hr    518 embryo 22-24hr    644 larva L1    929 larva L2    1771 larva L3 12hr old    2176 larva L3 puffstage 1-2    1555 larva L3 puffstage 3-6    1380 larva L3 puffstage 7-9    1119 white prepupae new    1409 white prepupae 12hr    847 white prepupae 24hr    948 pupae 2d postWPP    1170 pupae 3d postWPP    622 pupae 4d postWPP    537 adult male 01day    915 adult male 05day    1201 adult male 30day    1304 adult female 01day    891 adult female 05day    617 adult female 30day    767 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0039068    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0039068 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, larval/adult salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult midgut, larval/adult hindgut, adult heart, larval fat body, larval trachea, virgin spermatheca, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0039068 expression level Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules    1432 Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules    1826.4 Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules  (1432) Larval Fat Body    129.4 Larval Salivary Gland  (742.9) Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop  523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules  (1826.4) Adult Fat Body    93.7 Adult Salivary Gland  (783.8) Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules  (1432) Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules  (1826.4) Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules    1432 Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules    1826.4 Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0039068 expression level Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules    1432 Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules    1826.4 Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules  (1432) Larval Fat Body    129.4 Larval Salivary Gland  742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop  523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules  (1826.4) Adult Fat Body    93.7 Adult Salivary Gland  783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules  1432 Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules  (1826.4) Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    67.95 Larval Midgut    283.7 Larval Hindgut    224.3 Larval Malpighian Tubules    1432 Larval Fat Body    129.4 Larval Salivary Gland    742.9 Larval Trachea    167.375 Larval Carcass    262.725 Adult Head    81.5 Adult Eye    53.475 Adult Brain    65.5 Adult Thoracic-Abdominal Ganglion    71.7 Adult Crop    523.9 Adult Midgut    269.1 Adult Hindgut    327 Adult Malpighian Tubules    1826.4 Adult Fat Body    93.7 Adult Salivary Gland    783.8 Adult Heart    106.25 Adult VirginFemale Spermatheca    103.6 Adult InseminatedFemale Spermatheca    94.3 Adult Ovary    96.6 Adult Testis    29.3 Adult Male Accessory Gland    124.5 Adult Carcass    89.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    81.5   NA  Eye    53.475   NA  Brain    65.5   67.95  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    71.7   NA  Crop    523.9   283.7  Midgut    269.1   224.3  Hindgut    327   1432  Malpighian Tubules    1826.4   129.4  Fat Body    93.7   742.9  Salivary Gland    783.8   NA  Heart    106.25   167.375  Trachea    NA   NA  VirginFemale Spermatheca    103.6   NA  InseminatedFemale Spermatheca    94.3   NA  Ovary    96.6   NA  Testis    29.3   NA  Male Accessory Gland    124.5   262.725  Carcass    89.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039068 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13827-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG13827 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG13827GD198 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG13827GD198 Phenotype manifest in Allele chaeta, with Scer\GAL4pnr-MD237 CG13827GD198
Classical Alleles ( 7 )
For All Classical Alleles Show
Allele of CG13827 Class Mutagen Stocks Known lesion CG138275-SZ-3013 1 -- CG13827e01415 piggyBac transposase 1 -- CG13827f05758 piggyBac transposase 1 -- CG13827EP958 0 -- CG13827wda11 Delta2-3 0 Yes CG13827wda4 Delta2-3 0 Yes CG13827wda8 Delta2-3 0 Yes
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13827 Class Mutagen Stocks Known lesion CG13827GD198 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13827KK109249 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6274 (Ryder, 2004.4.26) Df(3R)Exel6280 (Ryder, 2004.4.26)
Partially disrupted in	Df(3L)wda4 (Guelman et al., 2006) Df(3L)wda8 (Guelman et al., 2006) Df(3L)wda11 (Guelman et al., 2006)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD198} NA P{KK109249} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{RS5}CG138275-SZ-3013 NA PBac{RB}CG13827e01415 NA PBac{WH}CG13827f05758 NA insertion of mobile activating element P{EP}CG13827EP958 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
lateral inhibition inferred from mutant phenotype (Mummery-Widmer et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
peroxisome fission inferred from electronic annotation with InterPro:IPR008733 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
peroxisomal membrane inferred from electronic annotation with InterPro:IPR008733 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13827 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039068 DroID - A comprehensive database of gene and protein interactions. • FBgn0039068
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16987 Dere\GG11196 Dgri\GH18517 Dmoj\GI24362 Dper\GL24492 Dpse\GA12553 Dsec\GM26496 Dsim\GD21009 Dvir\GJ24372 Dwil\GK11520 Dyak\GE10363
Curated drosophilid orthologs	Dpse\GA12553
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL002433-PA Aedes aegypti (mosquito) AGAP003081-PA Anopheles gambiae (mosquito) 86149 Batrachochytrium dendrobatidis (chytrid fungus) 288202 Branchiostoma floridae (lancelet) BGIBMGA013610-PA Bombyx mori (silk worm) ENSBTAP00000025148 Bos taurus (bovine) CAL0001256 Candida albicans (a form of yeast) CN11557 Caenorhabditis brenneri (small nematode) CBP29717 Caenorhabditis briggsae (nematode) CE17569 Caenorhabditis elegans (worm) ENSCAFP00000026923 Canis familiaris (dog) ENSCINP00000023519 Ciona intestinalis (sea squirt) JA10580 Caenorhabditis japonica (nematode) CPIJ009744 Culex pipens (mosquito) CPIJ013737 Culex pipens (mosquito) ENSCPOP00000003166 Cavia porcellus (guinea pig) RP29250 Caenorhabditis remanei (nematode) ENSCSAVP00000004575 Ciona savignyi (sedentary tunicate) 175631 Capitella spl (polychaete worm) 304029 Daphnia pulex (daphnia) ENSDARP00000066167 Danio rerio (zebra fish) ENSECAP00000020767 Equus caballus (horse) ENSGACP00000011159 Gymnopilus aculeatus (mushroom) ENSGALP00000005628 Gallus gallus (chicken) 91533 Hypsipyla robusta (cedar shoot borer) ENSP00000221480 Homo sapiens (human) 235958 Lottia gigantea (owl limpet) LmjF28.2260 Leishmania major (virus) ENSMODP00000018897 Monodelphis domestica (gray opossum) ENSMMUP00000011027 Macaca mulatta (rhesus monkey) ENSMUSP00000004686 Mus musculus (house mouse) 188278 Nematostella vectensis (starlet anemone) XP_001603227.1 Nasonia vitripennis (wasp) ENSOANP00000021230 Ornithorynchus anatinus (platypus) ENSORLP00000009986 Oryzias latipes (japanese killifish) PHUM008530-PA Pediculus humanus (human body louse) PP22664 Pristionchus pacificus (nematode) ENSPPYP00000010622 Pongo pygmaeus (orangutan) ENSPTRP00000017673 Pan troglodytes (chimpanzee) ENSRNOP00000033197 Rattus norvegicus (norway rat) XP_001188051.1 Strongylocentrotus purpuratus (purple sea urchin) 6126 Trichoplax adhaerens (metazoa) XP_973218.1 Tribolium castaneum (red flour beetle) ENSTNIP00000008832 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000016407 Takifugu rubripes (pufferfish Takifugu) 3717.m00028 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000003814 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15132 LH16706 FBgn0228230 FBgn0213531 FBgn0211452 FBgn0192464 FBgn0181349 JGI_V11_304029 FBgn0072599 FBgn0162081 FBgn0147085 FBgn0125984 FBgn0103497 FBgn0094006 FBgn0089162 CPIJ013737 CPIJ009744 BGIBMGA013611 BGIBMGA013610 GB13564 AGAP003081 AAEL002433 PB24703 PHUM318590 GLEAN_11223
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Harvard	- PBac{RB}CG13827e01415 - PBac{WH}CG13827f05758
Kyoto	125835 w1118; P{RS5}CG138275-SZ-3013
VDRC	v101466 P{KK109249}VIE-260B v24481 w1118; P{GD198}v24481/TM3
Genomic Clones ( 2 )
	BACR01E13 BACR03N12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 3 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE30473
Other clones	DPiM_RE30473
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	RP003323145
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039068 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42751
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG13827 BcDNA:RE30473 (FlyBase, 1996-)
Additional comments	Source for merge of CG13827 BcDNA:RE30473 was a shared cDNA (date:030728). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_142880 RefSeq (Proteins) • NP_651137 DDBJ / EMBL / GenBank • AAF56119 AAM29451 AY113446 BI234725 CZ479225 CZ479226 CZ488388 Entrez Gene - A searchable database of RefSeq genes. • 42751 UniProtKB/TrEMBL • Q8MZ03
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Peroxisomal biogenesis factor 11 (IPR008733)
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039068 DroID - A comprehensive database of gene and protein interactions. • FBgn0039068 DRSC - Results from RNAi screens. • FBgn0039068 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039068 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13827-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039068 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42751 InParanoid A subset of ortholog calls from InParanoid. • AAEL002433-PA Aedes aegypti (mosquito) AGAP003081-PA Anopheles gambiae (mosquito) 86149 Batrachochytrium dendrobatidis (chytrid fungus) 288202 Branchiostoma floridae (lancelet) BGIBMGA013610-PA Bombyx mori (silk worm) ENSBTAP00000025148 Bos taurus (bovine) CAL0001256 Candida albicans (a form of yeast) CN11557 Caenorhabditis brenneri (small nematode) CBP29717 Caenorhabditis briggsae (nematode) CE17569 Caenorhabditis elegans (worm) ENSCAFP00000026923 Canis familiaris (dog) ENSCINP00000023519 Ciona intestinalis (sea squirt) JA10580 Caenorhabditis japonica (nematode) CPIJ009744 Culex pipens (mosquito) CPIJ013737 Culex pipens (mosquito) ENSCPOP00000003166 Cavia porcellus (guinea pig) RP29250 Caenorhabditis remanei (nematode) ENSCSAVP00000004575 Ciona savignyi (sedentary tunicate) 175631 Capitella spl (polychaete worm) 304029 Daphnia pulex (daphnia) ENSDARP00000066167 Danio rerio (zebra fish) ENSECAP00000020767 Equus caballus (horse) ENSGACP00000011159 Gymnopilus aculeatus (mushroom) ENSGALP00000005628 Gallus gallus (chicken) 91533 Hypsipyla robusta (cedar shoot borer) ENSP00000221480 Homo sapiens (human) 235958 Lottia gigantea (owl limpet) LmjF28.2260 Leishmania major (virus) ENSMODP00000018897 Monodelphis domestica (gray opossum) ENSMMUP00000011027 Macaca mulatta (rhesus monkey) ENSMUSP00000004686 Mus musculus (house mouse) 188278 Nematostella vectensis (starlet anemone) XP_001603227.1 Nasonia vitripennis (wasp) ENSOANP00000021230 Ornithorynchus anatinus (platypus) ENSORLP00000009986 Oryzias latipes (japanese killifish) PHUM008530-PA Pediculus humanus (human body louse) PP22664 Pristionchus pacificus (nematode) ENSPPYP00000010622 Pongo pygmaeus (orangutan) ENSPTRP00000017673 Pan troglodytes (chimpanzee) ENSRNOP00000033197 Rattus norvegicus (norway rat) XP_001188051.1 Strongylocentrotus purpuratus (purple sea urchin) 6126 Trichoplax adhaerens (metazoa) XP_973218.1 Tribolium castaneum (red flour beetle) ENSTNIP00000008832 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000016407 Takifugu rubripes (pufferfish Takifugu) 3717.m00028 Tetrahymena thermophila (ciliate protozoa) ENSXETP00000003814 Xenopus tropicalis (frog) modMine - Data generated by the modENCODE project. • FBgn0039068 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV15132 LH16706 FBgn0228230 FBgn0213531 FBgn0211452 FBgn0192464 FBgn0181349 JGI_V11_304029 FBgn0072599 FBgn0162081 FBgn0147085 FBgn0125984 FBgn0103497 FBgn0094006 FBgn0089162 CPIJ013737 CPIJ009744 BGIBMGA013611 BGIBMGA013610 GB13564 AGAP003081 AAEL002433 PB24703 PHUM318590 GLEAN_11223
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:RE30473   CG13827 (Guelman et al., 2006, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0063037
References ( 12 )
Research paper	Guelman et al., 2006, Molec. Cell. Biol. 26(19): 7178--7189 The essential gene wda encodes a WD40 repeat subunit of Drosophila SAGA required for histone H3 acetylation. [FBrf0192338]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]