A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Nup98-96

General Information
SymbolDmel\Nup98-96SpeciesD. melanogaster
NameNucleoporin 98-96kDAnnotation symbolCG10198
Feature typeprotein_coding_geneFlyBase IDFBgn0039120
Gene Model StatusCurrent Stock availability 6 publicly available
Also Known AsNup98, Nup96, l(3)95BCd
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map95B1-95B5Sequence location3R:19,599,947..19,607,343 [-]

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The gene Nucleoporin 98-96kD is referred to in FlyBase by the symbol Dmel\Nup98-96 (CG10198, FBgn0039120). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. There is experimental evidence that it is involved in the biological process: germ-line stem cell maintenance; SMAD protein import into nucleus; phagocytosis, engulfment. 15 alleles are reported. The phenotypes of these alleles are annotated with: female fusome; nurse cell spectrosome; male germline cell. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Nuclear protein 96; Peptidase S59, nucleoporin. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1632194_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Nup98. Gene sequence location is 3R:19599947..19607343.

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Description
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FB2013_03
FB2013_02
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FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
95B1-95B5  
Limits computationally determined from genome sequence between P{PZ}l(3)0468404684 and P{PZ}Atg600096  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
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Please see the GBrowse view of Dmel\Nup98-96 for information on other features GBrowse View Help
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detailed view FBtr0084462 FBtr0334895 FBtr0084461 FBtr0304567 FBtr0334894 FBtr0084460 FBtr0304729 FBtr0084459 FBpp0083853 FBpp0306916 FBpp0083852 FBpp0293109 FBpp0306915 FBpp0083851 FBpp0083850 FBpp0293271 FBti0042639 FBti0053432 FBti0106530 FBti0029607 FBti0039164 FBti0124341 FBti0112054 FBti0036256 FBti0075881 FBti0072089 FBti0055962 FBti0107176 FBti0025198 FBti0036651 FBti0107088 FBti0143988 FBti0105642 FBti0100179 FBti0106161 FBti0011333 FBti0103920 FBti0103919 FBti0028137
Comments on Gene Model
The larger Nup98-RA transcript encodes a single, large precursor polyprotein that, in other eukaryotes, and thus presumably in flies, autoproteolytically cleaves itself between residues Phe1028 and Ser1029, yielding separate Nup98 and Nup96 proteins (FBrf0159638).
Gene model reviewed during 5.41
Gene model reviewed during 5.47
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Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0084460
  6624
  1960
FBtr0304567
  3987
  1179
FBtr0334894
  6412
  1960
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0083851  
210.1  
1960  
6.50  
FBpp0293109  
121.6  
1179  
6.47  
FBpp0306915  
210.1  
1960  
6.50  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
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Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
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Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
inferred from physical interaction with Rae1
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval salivary gland, larval trachea, adult ovary, adult testis, larval carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 218.075
Larval Midgut
 
 49.4
Larval Hindgut
 
 89.2
Larval Malpighian Tubules
 
 57.3
Larval Fat Body
 
 67.2
Larval Salivary Gland
 
 113.8
Larval Trachea
 
 147.85
Larval Carcass
 
 105.3
Adult Head
 
 41.9
Adult Eye
 
 31.525
Adult Brain
 
 64.6
Adult Thoracic-Abdominal Ganglion
 
 57.2
Adult Crop
 
 44.6
Adult Midgut
 
 41
Adult Hindgut
 
 50.9
Adult Malpighian Tubules
 
 50.3
Adult Fat Body
 
 55.1
Adult Salivary Gland
 
 50.7
Adult Heart
 
 32.875
Adult VirginFemale Spermatheca
 
 34.5
Adult InseminatedFemale Spermatheca
 
 43.1
Adult Ovary
 
 277.2
Adult Testis
 
 120.5
Adult Male Accessory Gland
 
 67.6
Adult Carcass
 
 48.6
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 41.9
 
NA 
Eye
 
 31.525
 
NA 
Brain
 
 64.6
 
218.075 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 57.2
 
NA 
Crop
 
 44.6
 
no informative data 
Midgut
 
 no informative data
 
89.2 
Hindgut
 
 50.9
 
57.3 
Malpighian Tubules
 
 no informative data
 
67.2 
Fat Body
 
 no informative data
 
113.8 
Salivary Gland
 
 no informative data
 
NA 
Heart
 
 32.875
 
147.85 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 34.5
 
NA 
InseminatedFemale Spermatheca
 
 43.1
 
NA 
Ovary
 
 277.2
 
NA 
Testis
 
 120.5
 
NA 
Male Accessory Gland
 
 67.6
 
105.3 
Carcass
 
 no informative data

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
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[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (29)
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 (58)
ovary, mated 4-day female
 (46)
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 (58)
ovary, mated 4-day female
 (46)
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 29
central nervous system, larvae L3
 
 18
central nervous system, pupae P8
 
 7
head, virgin 1-day female
 
 4
head, virgin 4-day female
 
 4
head, virgin 20-day female
 
 6
head, mated 1-day female
 
 3
head, mated 4-day female
 
 4
head, mated 20-day female
 
 5
head, mated 1-day male
 
 5
head, mated 4-day male
 
 6
head, mated 20-day male
 
 7
salivary gland, larvae L3 wandering
 
 1
salivary gland, white prepupae
 
 2
digestive system, larvae L3 wandering
 
 5
digestive system, 1-day adult
 
 4
digestive system, 4-day adult
 
 6
digestive system, 20-day adult
 
 6
fat body, larvae L3 wandering
 
 2
fat body, white prepupae
 
 6
fat body, pupae P8
 
 4
carcass, larvae L3 wandering
 
 15
carcass, 1-day adult
 
 4
carcass, 4-day adult
 
 6
carcass, 20-day adult
 
 6
ovary, virgin 4-day female
 
 58
ovary, mated 4-day female
 
 46
testis, mated 4-day male
 
 17
accessory gland, mated 4-day male
 
 5
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (66)
embryo 02-04hr
 (49)
embryo 04-06hr
 (63)
embryo 06-08hr
 (47)
embryo 08-10hr
 (38)
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 (44)
adult female 30day
 (43)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (66)
embryo 02-04hr
 (49)
embryo 04-06hr
 (63)
embryo 06-08hr
 (47)
embryo 08-10hr
 (38)
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 (44)
adult female 30day
 (43)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 66
embryo 02-04hr
 
 49
embryo 04-06hr
 
 63
embryo 06-08hr
 
 47
embryo 08-10hr
 
 38
embryo 10-12hr
 
 21
embryo 12-14hr
 
 20
embryo 14-16hr
 
 16
embryo 16-18hr
 
 13
embryo 18-20hr
 
 8
embryo 20-22hr
 
 10
embryo 22-24hr
 
 11
larva L1
 
 16
larva L2
 
 14
larva L3 12hr old
 
 12
larva L3 puffstage 1-2
 
 10
larva L3 puffstage 3-6
 
 15
larva L3 puffstage 7-9
 
 17
white prepupae new
 
 16
white prepupae 12hr
 
 18
white prepupae 24hr
 
 21
pupae 2d postWPP
 
 14
pupae 3d postWPP
 
 9
pupae 4d postWPP
 
 9
adult male 01day
 
 11
adult male 05day
 
 15
adult male 30day
 
 14
adult female 01day
 
 22
adult female 05day
 
 44
adult female 30day
 
 43
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (36)
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 (32)
embryonic GM2
 (43)
embryonic Kc167
 (39)
embryonic S1
 (43)
embryonic S3
 (35)
leg disc CME L1
 
 23
wing disc CME-W2
 (30)
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 (30)
wing disc ML-DmD16-c3
 (30)
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 (48)
eye-antennal disc ML-DmD11
 (36)
antennal disc ML-DmD20-c5
 (28)
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 (29)
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 (30)
ovary fGS/OSS
 (57)
ovary OSC
 (59)
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (36)
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 32
embryonic GM2
 (43)
embryonic Kc167
 (39)
embryonic S1
 (43)
embryonic S3
 (35)
leg disc CME L1
 
 23
wing disc CME-W2
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 30
wing disc ML-DmD16-c3
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 (48)
eye-antennal disc ML-DmD11
 (36)
antennal disc ML-DmD20-c5
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 29
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 30
ovary fGS/OSS
 (57)
ovary OSC
 (59)
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 36
Schneider line 2 Sg4
 
 23
embryonic 1182-4H
 
 32
embryonic GM2
 
 43
embryonic Kc167
 
 39
embryonic S1
 
 43
embryonic S3
 
 35
leg disc CME L1
 
 23
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 25
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 30
wing disc ML-DmD21
 
 13
wing disc ML-DmD32
 
 22
haltere disc ML-DmD17-c3
 
 48
eye-antennal disc ML-DmD11
 
 36
antennal disc ML-DmD20-c5
 
 28
mixed discs ML-DmD4-c1
 
 22
CNS ML-DmBG1-c1
 
 29
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 30
ovary fGS/OSS
 
 57
ovary OSC
 
 59
ovary OSS
 
 20
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 (38)
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 (41)
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (32)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 (28)
Paraquat 10 mM 48 hrs, 4-day adult
 (30)
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 (38)
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 (41)
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 28
Paraquat 10 mM 48 hrs, 4-day adult
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 7
cold shock, 4-day adult
 
 6
heat shock, 4-day adult
 
 16
Cadmium 50 mM 6 hrs, larvae L3
 
 5
Cadmium 50 mM 12 hrs, larvae L3
 
 5
Cadmium 50 mM 48 hrs, 4-day adult
 
 18
Cadmium 100 mM 48 hrs, 4-day adult
 
 38
Copper 0.5 mM 12 hrs, larvae L3
 
 2
Copper 15 mM 48 hrs, 4-day adult
 
 14
Zinc 5 mM 12 hrs, larvae L3
 
 2
Zinc 4.5 mM 48 hrs, 4-day adult
 
 8
Ethanol 2.5% 3 hrs, larvae L3
 
 41
Ethanol 5% 3 hrs, larvae L3
 
 6
Ethanol 10% 3 hrs, larvae L3
 
 5
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 6
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 32
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 11
Paraquat 5 mM 48 hrs, 4-day adult
 
 28
Paraquat 10 mM 48 hrs, 4-day adult
 
 30
Rotenone 2 μg 12 hrs, larvae L3
 
 5
Rotenone 8 μg 12 hrs, larvae L3
 
 6
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 8 )
For All Classical Alleles Show

Allele of Nup98-96ClassMutagenStocksKnown lesion
Nup98-96339
2 Yes
Nup98-96G21201 --
Nup98-962288
0 Yes
Nup98-96C14.7
0 --
Nup98-96E53.1
0 Yes
Nup98-96F1.13
0 Yes
Nup98-96F1.15
0 Yes
Nup98-96F8.5
0 Yes
hide Alleles Carried on Transgenic Constructs ( 7 )
For All Alleles Carried on Transgenic Constructs Show

Allele of Nup98-96ClassMutagenStocksKnown lesion
Nup98-96GD68972 Yes
Nup98-96HM050481 Yes
Nup98-96dsRNA.cMa0 Yes
Nup98-96KK1003880 Yes
Nup98-96NIG.10198R0 Yes
Nup98-96Scer\UAS.980 Yes
Nup98-96Scer\UAS.cPa0 Yes
hide Aneuploid Aberrations
Disrupted in
Not disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function
CV term
References
inferred from physical interaction with Rae1
inferred from physical interaction with UniProtKB:Q9VKJ3
(assigned by UniProtKB)
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from physical interaction with Rae1
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with Saccharomyces NUP100
Biological Process ( 0 terms)
Cellular Component
CV term
References
inferred from sequence or structural similarity with EMBL:AF071076 AND inferred from sequence or structural similarity with UniProtKB:P49793
inferred from sequence or structural similarity with Saccharomyces NUP100
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Nup98-96 allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (46) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6Z8ZFV)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
 
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
Drosophila grimshawi
 
 
 
hideOrthologs in non-Drosophila Dipterans (EOG63FH4W)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG6JSZ19)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\GB43238
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG015889
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG029478
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG031264
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH26025
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP19814
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO23081
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL21585
 
Linepithema humile
Argentine ant 
Lhum\LH14813
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB24904
 
Solenopsis invicta
Red fire ant 
Sinv\SINV20541
 
Solenopsis invicta
Red fire ant 
Sinv\SINV20540
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6866TB)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG62RS0Z)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
hide Human Orthologs (1)
Gene
OMIM
HGNC
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 6 )
Bloomington
Kyoto
VDRC
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 62 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: CG10198 CG10201
Source for merge of: l(3)95BCd Nup98
Additional comments
FlyBase Curator comment: Correspondence with author Lan Xu revealed that 'nup145' = CG10198.
Source for merge of CG10198 CG10201 was a shared cDNA (date:010720).
hide Other Comments
S2 cells treated with dsRNA directed against Nup98 show decreased uptake of S.aureus by phagocytosis compared to control cells.
S2 cells treated with dsRNA generated against this gene show reduced phagocytosis of Candida albicans compared to untreated cells.
Identified as a potential component of the hh signalling pathway in a genome-wide RNAi screen. dsRNA made from templates generated with primers directed affects the extent of expression of a hh signaling reporter construct in Clone 8 cells.
This gene is alternatively transcribed, giving rise to a minor 3.5kb Nup98 transcript and a major 7.3kb Nup98-Nup96 transcript. Which may autoproteolytically cleaves itself yielding separate Nup98 and Nup96 proteins.
Nup98 causes epistatic inviability in hybrids between D.melanogaster and D.simulans.
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
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BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 18 )
Reported As
Symbol Synonym
CG10201
 
Nup98-96
 
Name Synonym
Nucleoporin 98
nucleoporin98-96
Nucleoporin 98-96
 
Nucleoporin 98-96kD
 
Nup98
 
Secondary FlyBase IDs
  • FBgn0021781
  • FBgn0039119
hide References ( 54 )
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hide Recent research papers ( 5 )
Habermann et al., 2012, Mol. Cell. Biol. 32(17): 3554--3569
Functional Analysis of Centrosomal Kinase Substrates in Drosophila melanogaster Reveals a New Function of the Nuclear Envelope Component Otefin in Cell Cycle Progression. [FBrf0219185]
Ranz et al., 2012, Mol. Biol. Evol. 29(1): 13--16
Conserved gene order at the nuclear periphery in Drosophila. [FBrf0217437]
Finan et al., 2011, Proc. Natl. Acad. Sci. U.S.A. 108(14): 5566--5571
From the Cover: Proteomics approach to study the functions of Drosophila myosin VI through identification of multiple cargo-binding proteins. [FBrf0213355]
Parrott et al., 2011, PLoS ONE 6(9): e25087
Nucleoporin98-96 Function Is Required for Transit Amplification Divisions in the Germ Line of Drosophila melanogaster. [FBrf0216255]
Tian et al., 2011, Nat. Neurosci. 14(10): 1267--1275
Drosophila Rae1 controls the abundance of the ubiquitin ligase Highwire in post-mitotic neurons. [FBrf0216253]
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