Gene Dmel\CG13641

Help

Close All Open All

General Information

Symbol

Dmel\CG13641

Species

D. melanogaster

Name

Annotation symbol

CG13641

Feature type

protein_coding_gene

FlyBase ID

FBgn0039239

Gene Model Status

Current

Stock availability

2 publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

96B1-96B1

Sequence location

3R:20,689,816..20,690,502 [-]

Genomic Maps

Select View:

modENCODE GBrowse

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol Dmel\CG13641 (FBgn0039239). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult fat body, inseminated spermatheca. Comments on Affy2 ProbeSet: ProbeSet 1630561_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13641. Gene sequence location is 3R:20689816..20690502.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

Update Feed

Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.

FB2011_10

FB2012_01

Sequence features

BKN24583

HFA14640

BKN46531

All updates

Click here to see a list of all updates to this record from FB2010_08 and on.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

96B1-96B1

Limits computationally determined from genome sequence between P{PZ}crb⁰⁷²⁰⁷&P{PZ}BRWD3⁰⁵⁸⁴² and P{EP}CycB3^EP3127

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Please see the GBrowse view of Dmel\CG13641 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG13641-RA

FBtr0084729

NM_143045

687

142

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG13641-PA

FBpp0084104

15.6

142

7.36

NP_651302

AAF56354

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q9VC22

Mapped Features

Mapped Features have been reorganized, please see this article for details.

Additional mapped features and mutations can be found on GBrowse or related reports.

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

High-Throughput Expression Data

Untitled Document detailed view

See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0039239

	Styles
	Linear
	Logarithmic
	Heatmap
	Scales
	max expr for FBgn0039239
	Very low expression bin max
	Moderate expression bin max
	High expression bin max
	Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of extremely low expression. Peak expression observed during early pupal stages.
[download data (TSV)]

Guide to modENCODE expression level colors
	No expression (0 - 0)
	Extremely low expression (1 - 10)
	Very low expression (11 - 100)
	Low expression (101 - 400)
	Moderate expression (401 - 1400)
	Moderately high expression (1401 - 4000)
	High expression (4001 - 10000)
	Very high expression (10001 - 100000)
	Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0039239 expression level
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		10932
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

Linear, scaled to Very low expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		(120)
embryo 08-10hr		(422)
embryo 10-12hr		(1662)
embryo 12-14hr		(712)
embryo 14-16hr		(227)
embryo 16-18hr		(225)
embryo 18-20hr		(4132)
embryo 20-22hr		(9550)
embryo 22-24hr		(5812)
larva L1		(1846)
larva L2		(1672)
larva L3 12hr old		(6910)
larva L3 puffstage 1-2		(8679)
larva L3 puffstage 3-6		(9894)
larva L3 puffstage 7-9		(2757)
white prepupae new		(572)
white prepupae 12hr		(10932)
white prepupae 24hr		(5770)
pupae 2d postWPP		(4279)
pupae 3d postWPP		(6373)
pupae 4d postWPP		(9769)
adult male 01day		(455)
adult male 05day		(201)
adult male 30day		(302)
adult female 01day		(769)
adult female 05day		(563)
adult female 30day		(719)
Expression Level Scale		None Extremely low Very low Low

Linear, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		(1662)
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		(4132)
embryo 20-22hr		(9550)
embryo 22-24hr		(5812)
larva L1		(1846)
larva L2		(1672)
larva L3 12hr old		(6910)
larva L3 puffstage 1-2		(8679)
larva L3 puffstage 3-6		(9894)
larva L3 puffstage 7-9		(2757)
white prepupae new		572
white prepupae 12hr		(10932)
white prepupae 24hr		(5770)
pupae 2d postWPP		(4279)
pupae 3d postWPP		(6373)
pupae 4d postWPP		(9769)
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high

Linear, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		(10932)
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

Linear, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		10932
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high Extremely high

log, scaled to maximum FBgn0039239 expression level
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		10932
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

log, scaled to Very low expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		(422)
embryo 10-12hr		(1662)
embryo 12-14hr		(712)
embryo 14-16hr		(227)
embryo 16-18hr		(225)
embryo 18-20hr		(4132)
embryo 20-22hr		(9550)
embryo 22-24hr		(5812)
larva L1		(1846)
larva L2		(1672)
larva L3 12hr old		(6910)
larva L3 puffstage 1-2		(8679)
larva L3 puffstage 3-6		(9894)
larva L3 puffstage 7-9		(2757)
white prepupae new		(572)
white prepupae 12hr		(10932)
white prepupae 24hr		(5770)
pupae 2d postWPP		(4279)
pupae 3d postWPP		(6373)
pupae 4d postWPP		(9769)
adult male 01day		(455)
adult male 05day		(201)
adult male 30day		(302)
adult female 01day		(769)
adult female 05day		(563)
adult female 30day		(719)
Expression Level Scale		None Extremely low Very low Low

log, scaled to Moderate expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		(4132)
embryo 20-22hr		(9550)
embryo 22-24hr		(5812)
larva L1		1846
larva L2		1672
larva L3 12hr old		(6910)
larva L3 puffstage 1-2		(8679)
larva L3 puffstage 3-6		(9894)
larva L3 puffstage 7-9		(2757)
white prepupae new		572
white prepupae 12hr		(10932)
white prepupae 24hr		(5770)
pupae 2d postWPP		(4279)
pupae 3d postWPP		(6373)
pupae 4d postWPP		(9769)
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high

log, scaled to High expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		10932
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high

log, scaled to Extremely high expression
Developmental Stage		Expression Level
embryo 00-02hr		6
embryo 02-04hr		6
embryo 04-06hr		8
embryo 06-08hr		120
embryo 08-10hr		422
embryo 10-12hr		1662
embryo 12-14hr		712
embryo 14-16hr		227
embryo 16-18hr		225
embryo 18-20hr		4132
embryo 20-22hr		9550
embryo 22-24hr		5812
larva L1		1846
larva L2		1672
larva L3 12hr old		6910
larva L3 puffstage 1-2		8679
larva L3 puffstage 3-6		9894
larva L3 puffstage 7-9		2757
white prepupae new		572
white prepupae 12hr		10932
white prepupae 24hr		5770
pupae 2d postWPP		4279
pupae 3d postWPP		6373
pupae 4d postWPP		9769
adult male 01day		455
adult male 05day		201
adult male 30day		302
adult female 01day		769
adult female 05day		563
adult female 30day		719
Expression Level Scale		None Extremely low Very low Low Moderate Moderately high High Very high Extremely high

Heatmap
Developmental Stage		Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day

FlyAtlas Anatomical Expression Data for FBgn0039239

	Styles
	Linear
	Logarithmic
	Heatmap
	Back-to-back
	Scales
	max expr for FBgn0039239
	Moderate expression bin max
	High level expression bin max
	Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: larval fat body. Expression at moderate levels in the following post-embryonic organs or tissues: adult fat body, inseminated spermatheca.
[download data (TSV)]

Guide to FlyAtlas expression level colors
	No expression (0 - 9.999)
	Low expression (10 - 99.999)
	Moderate expression (100 - 499.999)
	High level expression (500 - 999.999)
	Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0039239 expression level
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		4266.6
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		(4266.6)
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High

Linear, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		(4266.6)
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

Linear, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		4266.6
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

log, scaled to maximum FBgn0039239 expression level
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		4266.6
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

log, scaled to Moderate expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		(4266.6)
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High

log, scaled to High level expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		(4266.6)
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

log, scaled to Very high expression
Tissue		Expression Level
Larval Central Nervous System		5.7
Larval Midgut		8.2
Larval Hindgut		68.9
Larval Malpighian Tubules		no informative data
Larval Fat Body		4266.6
Larval Salivary Gland		46.7
Larval Trachea		29.3
Larval Carcass		25.4
Adult Head		90.1
Adult Eye		40.325
Adult Brain		7.7
Adult Thoracic-Abdominal Ganglion		7.1
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut		17.3
Adult Malpighian Tubules		8.8
Adult Fat Body		259.9
Adult Salivary Gland		no informative data
Adult Heart		95.875
Adult VirginFemale Spermatheca		73.2
Adult InseminatedFemale Spermatheca		122.7
Adult Ovary		6.2
Adult Testis		4.2
Adult Male Accessory Gland		8.6
Adult Carcass		87
Expression Level Scale		None Low Moderate High Very high

Heatmap
Tissue		Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules		no informative data
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop		no informative data
Adult Midgut		no informative data
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland		no informative data
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level	Tissue	Adult Expression Level
NA	Head	90.1
NA	Eye	40.325
NA	Brain	7.7
5.7	Central Nervous System	NA
NA	Thoracic-Abdominal Ganglion	7.1
NA	Crop	no informative data
8.2	Midgut	no informative data
68.9	Hindgut	17.3
no informative data	Malpighian Tubules	8.8
4266.6	Fat Body	259.9
46.7	Salivary Gland	no informative data
NA	Heart	95.875
29.3	Trachea	NA
NA	VirginFemale Spermatheca	73.2
NA	InseminatedFemale Spermatheca	122.7
NA	Ovary	6.2
NA	Testis	4.2
NA	Male Accessory Gland	8.6
25.4	Carcass	87

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)

Expression Clusters

A cluster of genes with similar mRNA expression dynamics across development.

(The modENCODE Consortium, 2010)

mE2_34_mRNA_expression_cluster_18

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039239

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13641-RA

Alleles & Phenotypes

Summary of Allele Phenotypes

Lethality

Allele

viable, with Scer\GAL4^pnr-MD237

CG13641^GD6254

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of CG13641	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 2 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG13641	Class	Mutagen	Stocks	Known lesion
CG13641^GD6254		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes
CG13641^KK105447		in vitro construct - RNAi in vitro construct - regulatory fusion	1	Yes

Aneuploid Aberrations

Disrupted in

Df(3R)Exel6200

(Ryder, 2004.4.26)

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD6254}

P{KK105447}

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 0 terms )

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Interactions & Pathways

Summary of Physical Interactions

Protein-protein

Interacting group

Assay

References

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG13641 allele

Gene

References

External Data

Linkouts

BioGRID - A database of protein and genetic interactions

•

67893

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0039239

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

42969

Orthologs

Genome-wide drosophilid orthologs

Dsec\GM23450

Curated drosophilid orthologs

Dpse\GA12429

Linkouts

OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.

•

Stocks & Reagents

Stocks Listed in FlyBase ( 2 )

VDRC

v101688

P{KK105447}VIE-260B

v14717

w¹¹¹⁸; P{GD6254}v14717/TM3

Genomic Clones ( 1 )

BACR33F18

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones ( 15 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

IP04259

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

DRSC - Results from RNAi screens.

•

FBgn0039239

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

42969

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

NM_143045

RefSeq (Proteins)

•

NP_651302

DDBJ / EMBL / GenBank

•

AAF56354

Entrez Gene - A searchable database of RefSeq genes.

•

42969

UniProtKB/TrEMBL

•

Q9VC22

Other Crossreferences

Linkouts

BioGRID - A database of protein and genetic interactions

•

67893

DroID - A comprehensive database of gene and protein interactions.

•

FBgn0039239

DRSC - Results from RNAi screens.

•

FBgn0039239

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039239

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

CG13641-RA

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0039239

GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents

•

42969

InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.

•

42969

modMine - Data generated by the modENCODE project.

•

FBgn0039239

OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.

•

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG13641

(Keleman et al., 2009.8.5, Zsindely et al., 2009)

Name Synonym

Secondary FlyBase IDs

References ( 8 )

Research paper

Zsindely et al., 2009, Nucleic Acids Res. 37(20): 6665--6680: The loss of histone H3 lysine 9 acetylation due to dSAGA-specific dAda2b mutation influences the expression of only a small subset of genes. [FBrf0209301]

Supplementary material

The modENCODE Consortium, 2010, Science 330(6012):: DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):: Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Ryder, 2004.4.26, Exelixis CG deletion data.: Exelixis CG deletion data. [FBrf0184335]