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Gene Dmel\CG11790

General Information
Symbol	Dmel\CG11790	Species	D. melanogaster
Name		Annotation symbol	CG11790
Feature type	protein_coding_gene	FlyBase ID	FBgn0039265
Gene Model Status	Current	Stock availability	2 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96B18-96B19	Sequence location	3R:20,873,422..20,875,177 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG11790 (FBgn0039265). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: cell redox homeostasis. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Thioredoxin domain; Thioredoxin-like fold. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval/adult salivary gland, larval trachea, inseminated spermatheca, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system, adult testis, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1641568_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG11790. Gene sequence location is 3R:20873422..20875177.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01	Sequence features BKN31940 HFA14390
FB2011_10
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96B18-96B19   Limits computationally determined from genome sequence between P{PZ}ssh01207 and P{lacW}OstStt3j2D9
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG11790 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG11790-RA FBtr0084760  NM_143069   1016   302 CG11790-RB FBtr0084761  NM_170192   1122   245
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG11790-PA   FBpp0084135   33.4   302   6.14     NP_651326   AAF56385 CG11790-PB   FBpp0084136   27.1   245   6.79     NP_733071   AAN14034
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Thioredoxin-like fold (IPR012336) Thioredoxin domain (IPR013766)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56385   AE014297 AAN14034   AI109650   AW941722   AY095006 AAM11334   BI169146   BI484618   BI573205   BI573206   BP555404   BP555405   BT012482   CO179495   CO180946   CO187115   CO278752   EC060993   EC202052   EC206429   EC208119   EC215725   EC219511   EC241856   GH739165   GH740270   GH741814   GH741856   GH742072   GH742203   GH743609   GH744059   GH744191   GH744445   GH744551   GH745344   GH745488   GH747247   GH747371   GH761609   GH761660   GH761771   GH762231   GH762743   GH764164   GH765009   GH765212   GH765281   GH767341   GH768475   GH768976   GH769908   GH769993
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IMU2 Q8SWX6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0039265    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0039265 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed at stages throughout the pupal period. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0039265 expression level Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2829) embryo 02-04hr  (1907) embryo 04-06hr  (786) embryo 06-08hr  (654) embryo 08-10hr  (1004) embryo 10-12hr  (2192) embryo 12-14hr  (2485) embryo 14-16hr  (1661) embryo 16-18hr  (1795) embryo 18-20hr  (1971) embryo 20-22hr  (1206) embryo 22-24hr  (1485) larva L1  (1782) larva L2  (3112) larva L3 12hr old  (3002) larva L3 puffstage 1-2  (2793) larva L3 puffstage 3-6  (2642) larva L3 puffstage 7-9  (3490) white prepupae new  (3371) white prepupae 12hr  (4486) white prepupae 24hr  (4863) pupae 2d postWPP  (6432) pupae 3d postWPP  (3599) pupae 4d postWPP  (1534) adult male 01day  (1544) adult male 05day  (1765) adult male 30day  (1701) adult female 01day  (1666) adult female 05day  (2680) adult female 30day  (2874) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2829) embryo 02-04hr  (1907) embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr  (2192) embryo 12-14hr  (2485) embryo 14-16hr  (1661) embryo 16-18hr  (1795) embryo 18-20hr  (1971) embryo 20-22hr    1206 embryo 22-24hr  1485 larva L1  (1782) larva L2  (3112) larva L3 12hr old  (3002) larva L3 puffstage 1-2  (2793) larva L3 puffstage 3-6  (2642) larva L3 puffstage 7-9  (3490) white prepupae new  (3371) white prepupae 12hr  (4486) white prepupae 24hr  (4863) pupae 2d postWPP  (6432) pupae 3d postWPP  (3599) pupae 4d postWPP  (1534) adult male 01day  (1544) adult male 05day  (1765) adult male 30day  (1701) adult female 01day  (1666) adult female 05day  (2680) adult female 30day  (2874) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0039265 expression level Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (2829) embryo 02-04hr  (1907) embryo 04-06hr  (786) embryo 06-08hr  (654) embryo 08-10hr  (1004) embryo 10-12hr  (2192) embryo 12-14hr  (2485) embryo 14-16hr  (1661) embryo 16-18hr  (1795) embryo 18-20hr  (1971) embryo 20-22hr  (1206) embryo 22-24hr  (1485) larva L1  (1782) larva L2  (3112) larva L3 12hr old  (3002) larva L3 puffstage 1-2  (2793) larva L3 puffstage 3-6  (2642) larva L3 puffstage 7-9  (3490) white prepupae new  (3371) white prepupae 12hr  (4486) white prepupae 24hr  (4863) pupae 2d postWPP  (6432) pupae 3d postWPP  (3599) pupae 4d postWPP  (1534) adult male 01day  (1544) adult male 05day  (1765) adult male 30day  (1701) adult female 01day  (1666) adult female 05day  (2680) adult female 30day  (2874) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (2829) embryo 02-04hr  1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr  2192 embryo 12-14hr  (2485) embryo 14-16hr  1661 embryo 16-18hr  1795 embryo 18-20hr  1971 embryo 20-22hr    1206 embryo 22-24hr  1485 larva L1  1782 larva L2  (3112) larva L3 12hr old  (3002) larva L3 puffstage 1-2  (2793) larva L3 puffstage 3-6  (2642) larva L3 puffstage 7-9  (3490) white prepupae new  (3371) white prepupae 12hr  (4486) white prepupae 24hr  (4863) pupae 2d postWPP  (6432) pupae 3d postWPP  (3599) pupae 4d postWPP  1534 adult male 01day  1544 adult male 05day  1765 adult male 30day  1701 adult female 01day  1666 adult female 05day  (2680) adult female 30day  (2874) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    2829 embryo 02-04hr    1907 embryo 04-06hr    786 embryo 06-08hr    654 embryo 08-10hr    1004 embryo 10-12hr    2192 embryo 12-14hr    2485 embryo 14-16hr    1661 embryo 16-18hr    1795 embryo 18-20hr    1971 embryo 20-22hr    1206 embryo 22-24hr    1485 larva L1    1782 larva L2    3112 larva L3 12hr old    3002 larva L3 puffstage 1-2    2793 larva L3 puffstage 3-6    2642 larva L3 puffstage 7-9    3490 white prepupae new    3371 white prepupae 12hr    4486 white prepupae 24hr    4863 pupae 2d postWPP    6432 pupae 3d postWPP    3599 pupae 4d postWPP    1534 adult male 01day    1544 adult male 05day    1765 adult male 30day    1701 adult female 01day    1666 adult female 05day    2680 adult female 30day    2874 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0039265    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0039265 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult eye, larval/adult salivary gland, larval trachea, inseminated spermatheca, adult male accessory gland, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult female reproductive system, adult testis, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0039265 expression level Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland    1105.7 Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland    1204.1 Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland    1436.2 Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland  (1105.7) Larval Trachea  (966.525) Larval Carcass  (686.775) Adult Head    408.5 Adult Eye  531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland  (1204.1) Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca  (546.6) Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland  (1436.2) Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland  (1105.7) Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland  (1204.1) Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland  (1436.2) Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland    1105.7 Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland    1204.1 Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland    1436.2 Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0039265 expression level Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland    1105.7 Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland    1204.1 Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland    1436.2 Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland  (1105.7) Larval Trachea  (966.525) Larval Carcass  686.775 Adult Head    408.5 Adult Eye  531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland  (1204.1) Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca  546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland  (1436.2) Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland  1105.7 Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland  1204.1 Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland  1436.2 Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    487.3 Larval Midgut    225.8 Larval Hindgut    405 Larval Malpighian Tubules    172.9 Larval Fat Body    352.1 Larval Salivary Gland    1105.7 Larval Trachea    966.525 Larval Carcass    686.775 Adult Head    408.5 Adult Eye    531.85 Adult Brain    330.7 Adult Thoracic-Abdominal Ganglion    395.1 Adult Crop    343.4 Adult Midgut    240.9 Adult Hindgut    344.8 Adult Malpighian Tubules    240.1 Adult Fat Body    403.4 Adult Salivary Gland    1204.1 Adult Heart    376.35 Adult VirginFemale Spermatheca    475.9 Adult InseminatedFemale Spermatheca    546.6 Adult Ovary    366.3 Adult Testis    109.3 Adult Male Accessory Gland    1436.2 Adult Carcass    327.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    408.5   NA  Eye    531.85   NA  Brain    330.7   487.3  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    395.1   NA  Crop    343.4   225.8  Midgut    240.9   405  Hindgut    344.8   172.9  Malpighian Tubules    240.1   352.1  Fat Body    403.4   1105.7  Salivary Gland    1204.1   NA  Heart    376.35   966.525  Trachea    NA   NA  VirginFemale Spermatheca    475.9   NA  InseminatedFemale Spermatheca    546.6   NA  Ovary    366.3   NA  Testis    109.3   NA  Male Accessory Gland    1436.2   686.775  Carcass    327.1 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_25
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039265 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11790-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG11790 Stages(s) 1-3 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG11790EY15214 Sterility Allele fertile CG11790EY15214 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG11790 Class Mutagen Stocks Known lesion CG11790EY15214 P-element activity 1 -- CG11790GT-000741 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG11790 Class Mutagen Stocks Known lesion CG11790GD4646 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4646} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}CG11790GT-000741 NA insertion of mobile activating element P{EPgy2}CG11790EY15214 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
cell redox homeostasis inferred from electronic annotation with InterPro:IPR013766 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG11790 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67920 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039265 DroID - A comprehensive database of gene and protein interactions. • FBgn0039265 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42999
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17881 Dere\GG11351 Dgri\GH13139 Dmoj\GI22880 Dper\GL21887 Dpse\GA11201 Dsec\GM17791 Dsim\GD21162 Dvir\GJ23429 Dwil\GK13403 Dyak\GE23547
Curated drosophilid orthologs	Dpse\GA11201
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL009995-PA Aedes aegypti (mosquito) AGAP002363-PA Anopheles gambiae (mosquito) XP_394728.1 Apis mellifera (honey bee) XP_001943047.1 Acyrthosiphon pisum (pea aphid) 88333 Branchiostoma floridae (lancelet) XP_001895223.1 Brugia malayi (roundworm nematode) BGIBMGA012505-PA Bombyx mori (silk worm) CN02948 Caenorhabditis brenneri (small nematode) CBP03046 Caenorhabditis briggsae (nematode) CE30438 Caenorhabditis elegans (worm) ENSCINP00000007245 Ciona intestinalis (sea squirt) JA12883 Caenorhabditis japonica (nematode) CPIJ003897 Culex pipens (mosquito) RP48077 Caenorhabditis remanei (nematode) 225130 Capitella spl (polychaete worm) 304027 Daphnia pulex (daphnia) ISCW016183-PA Ixodes scapularis (deer tick) 204649 Lottia gigantea (owl limpet) XP_001605564.1 Nasonia vitripennis (wasp) PF13_0272 Plasmodium falciparum (protozoal parasite) PHUM002072-PA Pediculus humanus (human body louse) PVX_083515 Plasmodium vivax (protozoal parasite) Smp_052890 Schistosoma mansoni (trematode parasite) XP_781171.1 Strongylocentrotus purpuratus (purple sea urchin) 55148 Trichoplax adhaerens (metazoa) XP_968338.2 Tribolium castaneum (red flour beetle) TP02_0602 Theileria parva (parasitic protozoan) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16401 LH18077 ISCW016183 FBgn0240723 FBgn0215412 FBgn0210529 FBgn0192613 FBgn0172698 JGI_V11_304027 FBgn0071256 FBgn0159480 FBgn0145607 FBgn0120616 FBgn0103651 FBgn0094899 CPIJ003897 BGIBMGA012505 ACYPI002902 GB13514 AGAP002363 AAEL009995 PB25267 PHUM049610 GLEAN_00962
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
Bloomington	20993 w1118; P{GT1}CG11790GT-000741 21449 y1 w67c23; P{EPgy2}CG11790EY15214
Genomic Clones ( 2 )
	BACR03I15 BACR03L02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 45 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH08893 RE10237
Other clones	DPiM_GH08893
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE67748
Other clones	15322 98159 173742 CK01.29D.A10 CK01.76B.A10 CK01.103B.F6 EC13216 EK026326 EK059535 EK131428 FGM235B02 RH08920 RP001005346 RP001006438 RP001006525 RP001007615 RP001008251 RP001008664 RP001012076 RP001014068 RP001014120 RP001015434 RP001016528 RP001016597 RP001017191 RP001017294 RP001018600 RP001025401 RP001025836 RP001028733 RP001030382 RP001031599 RP001036338 RP001037316 RP001043748 RP001045917 RP001048775 RP001050467 RP001054663 RP001055867 RP001056543
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039265 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42999
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143069 NM_170192 RefSeq (Proteins) • NP_651326 NP_733071 DDBJ / EMBL / GenBank • AAF56385 AAM11334 AAN14034 AI109650 AW941722 AY095006 BI169146 Entrez Gene - A searchable database of RefSeq genes. • 42999 UniProtKB/TrEMBL • Q8IMU2 Q8SWX6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Thioredoxin-like fold (IPR012336) Thioredoxin domain (IPR013766)
Linkouts
	BioGRID - A database of protein and genetic interactions • 67920 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039265 DroID - A comprehensive database of gene and protein interactions. • FBgn0039265 DRSC - Results from RNAi screens. • FBgn0039265 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039265 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG11790-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039265 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 42999 InParanoid A subset of ortholog calls from InParanoid. • AAEL009995-PA Aedes aegypti (mosquito) AGAP002363-PA Anopheles gambiae (mosquito) XP_394728.1 Apis mellifera (honey bee) XP_001943047.1 Acyrthosiphon pisum (pea aphid) 88333 Branchiostoma floridae (lancelet) XP_001895223.1 Brugia malayi (roundworm nematode) BGIBMGA012505-PA Bombyx mori (silk worm) CN02948 Caenorhabditis brenneri (small nematode) CBP03046 Caenorhabditis briggsae (nematode) CE30438 Caenorhabditis elegans (worm) ENSCINP00000007245 Ciona intestinalis (sea squirt) JA12883 Caenorhabditis japonica (nematode) CPIJ003897 Culex pipens (mosquito) RP48077 Caenorhabditis remanei (nematode) 225130 Capitella spl (polychaete worm) 304027 Daphnia pulex (daphnia) ISCW016183-PA Ixodes scapularis (deer tick) 204649 Lottia gigantea (owl limpet) XP_001605564.1 Nasonia vitripennis (wasp) PF13_0272 Plasmodium falciparum (protozoal parasite) PHUM002072-PA Pediculus humanus (human body louse) PVX_083515 Plasmodium vivax (protozoal parasite) Smp_052890 Schistosoma mansoni (trematode parasite) XP_781171.1 Strongylocentrotus purpuratus (purple sea urchin) 55148 Trichoplax adhaerens (metazoa) XP_968338.2 Tribolium castaneum (red flour beetle) TP02_0602 Theileria parva (parasitic protozoan) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 42999 modMine - Data generated by the modENCODE project. • FBgn0039265 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV16401 LH18077 ISCW016183 FBgn0240723 FBgn0215412 FBgn0210529 FBgn0192613 FBgn0172698 JGI_V11_304027 FBgn0071256 FBgn0159480 FBgn0145607 FBgn0120616 FBgn0103651 FBgn0094899 CPIJ003897 BGIBMGA012505 ACYPI002902 GB13514 AGAP002363 AAEL009995 PB25267 PHUM049610 GLEAN_00962
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG11790 (Sathyanarayanan et al., 2008, Metta and Schlötterer, 2010)
Name Synonym
Secondary FlyBase IDs
References ( 13 )
Research paper	Metta and Schlötterer, 2010, BMC Evol. Biol. 10: 114 Non-random genomic integration - an intrinsic property of retrogenes in Drosophila? [FBrf0210914] Sathyanarayanan et al., 2008, Genes Dev. 22(11): 1522--1533 Identification of novel genes involved in light-dependent CRY degradation through a genome-wide RNAi screen. [FBrf0204805]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.9.23, RS lines for Bloomington. RS lines for Bloomington. [FBrf0179866] Micklem, 2000.8.2, FlyBase error report for CG11790 on Tue Aug 1 20:31:33 2000. FlyBase error report for CG11790 on Tue Aug 1 20:31:33 2000. [FBrf0131067]
FlyBase analysis	FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]
Automatic genome annotation	FamiliarityBreedsContempt, 1999.11, [Annotations performed at the Celera Jamboreee.] [Annotations performed at the Celera Jamboreee.] [FBrf0126705]