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Gene Dmel\CG13654

General Information
Symbol	Dmel\CG13654	Species	D. melanogaster
Name		Annotation symbol	CG13654
Feature type	protein_coding_gene	FlyBase ID	FBgn0039290
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96C4-96C5	Sequence location	3R:21,025,540..21,039,371 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG13654 (FBgn0039290). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 6 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: EGF-like region, conserved site; Epidermal growth factor-like, type 3; Protein of unknown function DUF3522. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. Comments on Affy2 ProbeSet: ProbeSet 1635362_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG13654. Gene sequence location is 3R:21025540..21039371.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN20964 HFA14654
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96C4-96C5
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG13654 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG13654-RA FBtr0084805  NM_143093   3163   993
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG13654-PA   FBpp0084180   111.9   993   6.91     NP_651350   AAF56416
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Epidermal growth factor-like, type 3 (IPR000742) EGF-like region, conserved site (IPR013032) Protein of unknown function DUF3522 (IPR021910)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56416   CO282273   CO339575   EC199573   EC227543   GO271024   GO271104   GO271180
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VBW1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0039290    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0039290 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderate expression to a trough of very low expression. Peak expression observed at stages throughout embryogenesis, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0039290 expression level Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr  (170) embryo 04-06hr  (427) embryo 06-08hr  (621) embryo 08-10hr  (415) embryo 10-12hr  (292) embryo 12-14hr  (282) embryo 14-16hr  (463) embryo 16-18hr  (724) embryo 18-20hr  (883) embryo 20-22hr  (625) embryo 22-24hr  (701) larva L1  (409) larva L2  (237) larva L3 12hr old  (421) larva L3 puffstage 1-2  (345) larva L3 puffstage 3-6  (347) larva L3 puffstage 7-9  (223) white prepupae new  (278) white prepupae 12hr  (275) white prepupae 24hr  (192) pupae 2d postWPP  (193) pupae 3d postWPP  (250) pupae 4d postWPP  (357) adult male 01day  (264) adult male 05day  (240) adult male 30day  (274) adult female 01day  (194) adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0039290 expression level Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr  (170) embryo 04-06hr  (427) embryo 06-08hr  (621) embryo 08-10hr  (415) embryo 10-12hr  (292) embryo 12-14hr  (282) embryo 14-16hr  (463) embryo 16-18hr  (724) embryo 18-20hr  (883) embryo 20-22hr  (625) embryo 22-24hr  (701) larva L1  (409) larva L2  (237) larva L3 12hr old  (421) larva L3 puffstage 1-2  (345) larva L3 puffstage 3-6  (347) larva L3 puffstage 7-9  (223) white prepupae new  (278) white prepupae 12hr  (275) white prepupae 24hr  (192) pupae 2d postWPP  (193) pupae 3d postWPP  (250) pupae 4d postWPP  (357) adult male 01day  (264) adult male 05day  (240) adult male 30day  (274) adult female 01day  (194) adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    12 embryo 02-04hr    170 embryo 04-06hr    427 embryo 06-08hr    621 embryo 08-10hr    415 embryo 10-12hr    292 embryo 12-14hr    282 embryo 14-16hr    463 embryo 16-18hr    724 embryo 18-20hr    883 embryo 20-22hr    625 embryo 22-24hr    701 larva L1    409 larva L2    237 larva L3 12hr old    421 larva L3 puffstage 1-2    345 larva L3 puffstage 3-6    347 larva L3 puffstage 7-9    223 white prepupae new    278 white prepupae 12hr    275 white prepupae 24hr    192 pupae 2d postWPP    193 pupae 3d postWPP    250 pupae 4d postWPP    357 adult male 01day    264 adult male 05day    240 adult male 30day    274 adult female 01day    194 adult female 05day    84 adult female 30day    86 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0039290    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0039290 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0039290 expression level Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0039290 expression level Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    21.15 Larval Midgut    30.3 Larval Hindgut    10.2 Larval Malpighian Tubules    15.7 Larval Fat Body    101.8 Larval Salivary Gland    7 Larval Trachea    3.8 Larval Carcass    7.8 Adult Head    37.7 Adult Eye    24.8 Adult Brain    74.4 Adult Thoracic-Abdominal Ganglion    75.6 Adult Crop    5.5 Adult Midgut    32.4 Adult Hindgut no informative data Adult Malpighian Tubules    8.5 Adult Fat Body    49.6 Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca    23.5 Adult InseminatedFemale Spermatheca    16.9 Adult Ovary    1.5 Adult Testis    4.5 Adult Male Accessory Gland no informative data Adult Carcass    27.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut no informative data Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland no informative data Adult Heart no informative data Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland no informative data Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    37.7   NA  Eye    24.8   NA  Brain    74.4   21.15  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    75.6   NA  Crop    5.5   30.3  Midgut    32.4   10.2  Hindgut    no informative data   15.7  Malpighian Tubules    8.5   101.8  Fat Body    49.6   7  Salivary Gland    no informative data   NA  Heart    no informative data   3.8  Trachea    NA   NA  VirginFemale Spermatheca    23.5   NA  InseminatedFemale Spermatheca    16.9   NA  Ovary    1.5   NA  Testis    4.5   NA  Male Accessory Gland    no informative data   7.8  Carcass    27.6 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039290 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13654-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG13654GD263 Phenotype manifest in Allele
Classical Alleles ( 4 )
For All Classical Alleles Show
Allele of CG13654 Class Mutagen Stocks Known lesion CG13654d09820 1 -- CG13654d11432 1 -- CG13654f03439 1 -- CG13654MB05466 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG13654 Class Mutagen Stocks Known lesion CG13654GD263 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG13654KK100868 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Partially disrupted in	Df(3R)FDD-0089346 (DrosDel Project, 2008.11.14)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD263} NA P{KK100868} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{WH}CG13654f03439 NA insertion of mobile activating element P{XP}CG13654d09820 NA P{XP}CG13654d11432 NA insertion of enhancer trap binary system Mi{ET1}CG13654MB05466 No
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG13654 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0039290 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43028
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17898 Dere\GG11373 Dgri\GH18055 Dmoj\GI23732 Dper\GL21912 Dpse\GA12438 Dsec\GM17816 Dsim\GD21185 Dvir\GJ10579 Dyak\GE23570
Curated drosophilid orthologs	Dpse\GA12438
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL001060-PA Aedes aegypti (mosquito) AGAP002672-PA Anopheles gambiae (mosquito) XP_396233.2 Apis mellifera (honey bee) At2g46060.1 Arabidopsis thaliana (wall cress) 125509 Branchiostoma floridae (lancelet) BGIBMGA004814-PA Bombyx mori (silk worm) ENSBTAP00000015212 Bos taurus (bovine) ENSCAFP00000003274 Canis familiaris (dog) CPIJ015128 Culex pipens (mosquito) ENSCPOP00000006474 Cavia porcellus (guinea pig) 228167 Capitella spl (polychaete worm) 311054 Daphnia pulex (daphnia) ENSECAP00000018922 Equus caballus (horse) ENSGACP00000021583 Gymnopilus aculeatus (mushroom) ENSGALP00000012065 Gallus gallus (chicken) 194137 Hypsipyla robusta (cedar shoot borer) ENSP00000250930 Homo sapiens (human) ENSMODP00000008573 Monodelphis domestica (gray opossum) ENSMMUP00000021459 Macaca mulatta (rhesus monkey) ENSMUSP00000103498 Mus musculus (house mouse) XP_001600009.1 Nasonia vitripennis (wasp) ENSORLP00000002012 Oryzias latipes (japanese killifish) 166622 Physcomitrella patens (moss) ENSPPYP00000007821 Pongo pygmaeus (orangutan) ENSPTRP00000053819 Pan troglodytes (chimpanzee) ENSRNOP00000021227 Rattus norvegicus (norway rat) XP_973474.1 Tribolium castaneum (red flour beetle) ENSTNIP00000019046 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000004469 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000021711 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18470 NV11274 LH20109 ISCW015298 ISCW009484 FBgn0240746 FBgn0197859 FBgn0192636 FBgn0172723 JGI_V11_311054 FBgn0072484 FBgn0159505 FBgn0146457 FBgn0125523 FBgn0103673 FBgn0094916 CPIJ015128 BGIBMGA004814 GB13196 AGAP002672 AAEL001060 GLEAN_09841
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	25451 w1118; Mi{ET1}CG13654MB05466
Harvard	- P{XP}CG13654d09820 - P{XP}CG13654d11432 - PBac{WH}CG13654f03439
VDRC	v13550 w1118; P{GD263}v13550/TM3
Genomic Clones ( 2 )
	BACR06L08 BACR17E12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 5 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones	44629 177255 EK160127 EP02303 FB59-CG13654-RA
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039290 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43028
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143093 RefSeq (Proteins) • NP_651350 DDBJ / EMBL / GenBank • AAF56416 Entrez Gene - A searchable database of RefSeq genes. • 43028 UniProtKB/TrEMBL • Q9VBW1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Epidermal growth factor-like, type 3 (IPR000742) EGF-like region, conserved site (IPR013032) Protein of unknown function DUF3522 (IPR021910)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0039290 DRSC - Results from RNAi screens. • FBgn0039290 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039290 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG13654-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039290 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43028 InParanoid A subset of ortholog calls from InParanoid. • AAEL001060-PA Aedes aegypti (mosquito) AGAP002672-PA Anopheles gambiae (mosquito) XP_396233.2 Apis mellifera (honey bee) At2g46060.1 Arabidopsis thaliana (wall cress) 125509 Branchiostoma floridae (lancelet) BGIBMGA004814-PA Bombyx mori (silk worm) ENSBTAP00000015212 Bos taurus (bovine) ENSCAFP00000003274 Canis familiaris (dog) CPIJ015128 Culex pipens (mosquito) ENSCPOP00000006474 Cavia porcellus (guinea pig) 228167 Capitella spl (polychaete worm) 311054 Daphnia pulex (daphnia) ENSECAP00000018922 Equus caballus (horse) ENSGACP00000021583 Gymnopilus aculeatus (mushroom) ENSGALP00000012065 Gallus gallus (chicken) 194137 Hypsipyla robusta (cedar shoot borer) ENSP00000250930 Homo sapiens (human) ENSMODP00000008573 Monodelphis domestica (gray opossum) ENSMMUP00000021459 Macaca mulatta (rhesus monkey) ENSMUSP00000103498 Mus musculus (house mouse) XP_001600009.1 Nasonia vitripennis (wasp) ENSORLP00000002012 Oryzias latipes (japanese killifish) 166622 Physcomitrella patens (moss) ENSPPYP00000007821 Pongo pygmaeus (orangutan) ENSPTRP00000053819 Pan troglodytes (chimpanzee) ENSRNOP00000021227 Rattus norvegicus (norway rat) XP_973474.1 Tribolium castaneum (red flour beetle) ENSTNIP00000019046 Tetraodon nigroviridis (green spotted pufferfish) ENSTRUP00000004469 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000021711 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43028 modMine - Data generated by the modENCODE project. • FBgn0039290 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB18470 NV11274 LH20109 ISCW015298 ISCW009484 FBgn0240746 FBgn0197859 FBgn0192636 FBgn0172723 JGI_V11_311054 FBgn0072484 FBgn0159505 FBgn0146457 FBgn0125523 FBgn0103673 FBgn0094916 CPIJ015128 BGIBMGA004814 GB13196 AGAP002672 AAEL001060 GLEAN_09841
Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym	CG13654 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
References ( 9 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Bellen, 2008.8.29, set806.xml set806.xml [FBrf0205581] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
Computer file	DrosDel Project, 2008.11.14, Deletion FDD-0089346. Deletion FDD-0089346. [FBrf0206145]