• Home
• Tools
  • Tools Overview
  • Query Tools

    
    • QuickSearch
    • QueryBuilder
    • TermLink
    • CytoSearch
    • RNA-Seq Search
    • Interactions Browser
    • ImageBrowse
    • Find A Person
    • Google™ FlyBase
  • Genomic/Map Tools

    
    • BLAST
    • GBrowse
    • GBrowse 2 Beta
    • CytoSearch
    • Feature Mapper
    • Aberrations Maps
    • Chromosome Maps
    • Coordinates Converter
  • Retrieve/Convert

    
    • Batch Download
    • Coordinates Converter
    • ID Converter
  • Data Submission

    
    • Fast-Track Your Paper
    • Submit Personal Comm
    • Add A New Person
    • Update Person Info
  • People

    
    • Find A Person
    • Add A New Person
    • Update Person Info
• Files
  • Files Overview
  • Current release
  • Archived releases
  • Map Conversion
  • FTP site:
  • Releases (FTP)
  • Genomes (FTP)
• Species
  • Phylogeny
  • Sequenced Species
  • Synteny Table
  • Color Illustrations
  • Abbreviations
• Documents
  • About FlyBase
  • Reference Manual:
  • Sections
  • Contents
  • Nomenclature
  • Release Notes
• Resources
  • All Resources
  • Model Organisms
  • Stock Collections
  • Vectors & Constructs
  • Other links:
  • BDGP
  • DGRC
  • DIS by issue
  • FlyExpress
  • Interactive Fly
  • modENCODE
  • Textpresso for Fly
• News
  • News
  • FlyBase Forum
  • FlyBase Positions
  • Meetings
  • Courses
  • Fly Board
  • White papers
  • Funding
  • bionet.dros
• Help
  • Google™ FlyBase
  • Site Map
  • FAQs
  • FlyBase Guides
  • Video Tutorials
  • Report help
  • New to Flies
  • Pers. comm.
  • Author guidelines
  • Contact FlyBase
• Archives
  • Prior Release
  • Other Archives
  • Coordinate Converter

Gene Dmel\RpS27

General Information
Symbol	Dmel\RpS27	Species	D. melanogaster
Name	Ribosomal protein S27	Annotation symbol	CG10423
Feature type	protein_coding_gene	FlyBase ID	FBgn0039300
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96C8-96C8	Sequence location	3R:21,071,677..21,073,236 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Ribosomal protein S27 is referred to in FlyBase by the symbol Dmel\RpS27 (CG10423, FBgn0039300). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: structural constituent of ribosome. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: translation. 4 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Ribosomal protein S27e; Ribosomal protein S27e, zinc-binding domain; Ribosomal protein, zinc-binding domain. Summary of modENCODE Temporal Expression Profile: Very high expression at all stages of development. Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1631296_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of RpS27. Gene sequence location is 3R:21071677..21073236.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96C8-96C8   Limits computationally determined from genome sequence between P{lacW}OstStt3j2D9 and P{PZ}Aats-gln05461
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RpS27 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.49 Low-frequency RNA-Seq exon junction(s) not annotated. DGC clone appears problematic (GH19261): incomplete CDS: DGC:LD37859 okay.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RpS27-RA FBtr0084868  NM_143102   729   84 RpS27-RB FBtr0304693  NM_001260372   687   84
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RpS27-PA   FBpp0084242   9.4   84   10.06     NP_651359   AAF56428 RpS27-PB   FBpp0293236   9.4   84   10.06     NP_001247301   AFH06618
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein, zinc-binding domain (IPR011332) Ribosomal protein S27e (IPR000592) Ribosomal protein S27e, zinc-binding domain (IPR023407)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA246602   AA735834   AA736151   AA801678   AA801779   AA803238   AA804024   AE014297 AAF56428   AF083321   AE014297 AFH06618   AI064245   AI107388   AI135513   AI135532   AI257028   AI259014   AI259217   AI260629   AI292871   AI388013   AI455613   AI455649   AI456215   AI512335   AI518369   AI533006   AI944623   AY118959 AAM50819   AY231814   AY232000   AY826147   BF500012   BF503951   BG636068   BG636246   BG638653   BG639237   BI164036   BI164547   BI166106   BI168036   BI173032   BI213779   BI216895   BI230180   BI232200   BI232202   BI232615   BI234954   BI236558   BI237852   BI238910   BI239648   BI239735   BI241585   BI242530   BI243500   BI351631   BI352149   BI352556   BI353445   BI353481   BI353752   BI354115   BI354123   BI354535   BI354546   BI354609   BI354651   BI354927   BI355640   BI357847   BI358273   BI363305   BI367270   BI370360   BI372460   BI375494   BI376023   BI482192   BI483314   BI483592   BI484560   BI484952   BI485142   BI485164   BI485217   BI486052   BI486271   BI486370   BI486488   BI563979   BI564277   BI564357   BI564478   BI565691   BI566513   BI566966   BI567118   BI567459   BI567462   BI567548   BI569108   BI569109   BI569850   BI570100   BI570275   BI570852   BI574561   BI575695   BI575730   BI575744   BI575797   BI575845   BI576766   BI577064   BI578081   BI579008   BI580676   BI581631   BI581840   BI582668   BI582686   BI582718   BI583052   BI583646   BI584229   BI584455   BI584456   BI584576   BI585576   BI585757   BI585910   BI586364   BI586802   BI586921   BI587018   BI587148   BI587150   BI588445   BI588893   BI589347   BI590296   BI590441   BI590529   BI592226   BI592520   BI592941   BI592982   BI593354   BI604375   BI604983   BI606918   BI607419   BI607895   BI608059   BI608787   BI608858   BI609657   BI610043   BI610121   BI610380   BI610474   BI610520   BI610562   BI611874   BI612769   BI614116   BI614234   BI614442   BI615557   BI615568   BI615960   BI616203   BI616658   BI618371   BI618433   BI619239   BI620490   BI620975   BI622040   BI622771   BI623024   BI623591   BI624616   BI624663   BI624848   BI625209   BI625400   BI625600   BI625617   BI625896   BI627882   BI628811   BI630034   BI630691   BI630767   BI631235   BI631804   BI631805   BI632938   BI634168   BI634366   BI634514   BI635506   BI640741   BI641258   BP540254   BP541643   BP541802   BP541874   BP542156   BP542180   BP542241   BP542491   BP543125   BP543171   BP543172   BP544062   BP544063   BP544413   BP544414   BP544946   BP544947   BP545154   BP545155   BP545278   BP545279   BP545492   BP545493   BP545697   BP545698   BP546303   BP546381   BP546544   BP546633   BP546733   BP547291   BP547680   BP547732   BP547810   BP548594   BP549822   BP549823   BP551453   BP551454   BP551458   BP551459   BP553716   BP554947   BP554948   BP557209   BP559386   BP559387   BP559558   BP559559   BX031406   CA804571   CA804738   CA805567   CA805608   CA805625   CK659797   CK660593   CO153197   CO153389   CO154106   CO154730   CO154754   CO155007   CO155044   CO155136   CO155694   CO156070   CO156236   CO156591   CO156617   CO180802   CO181080   CO181227   CO189040   CO191873   CO193187   CO193402   CO193484   CO193863   CO193871   CO194779   CO195754   CO263717   CO274910   CO276239   CO277240   CO279113   CO282293   CO283218   CO283614   CO284544   CO290585   CO294242   CO295949   CO309702   CO322987   CO335569   CO335570   CO335701   CO335921   CO335926   CO336140   CO336381   CO336729   CO337881   CO338020   CO338046   CO338465   DN154138   DQ440236   EC061214   EC071535   EC073526   EC082869   EC083175   EC086068   EC087132   EC197081   EC197402   EC208470   EC212005   EC212769   EC233962   EC234427   EC236463   EC241246   EC242291   EC261218   EC261338   EC261608   EC261971   EC262507   EC262689   EC263049   EC263149   EC263627   EC263795   EC263835   EC264159   EC264616   EC264784   EC264835   EC265327   EC265546   EC265611   EC265924   EC266906   EC267795   EL883317   EL885450   EL885451   EL885565   EL885566   ES688905   ES689051   ES692573   EV574794   EV574834   EV575083   EV575591   EV575932   EV576607   EV577714   EV578126   EV578842   EV579211   EV579859   EV579944   EV579974   EV580280   EV580731   EV580900   EV580940   EV581054   EV581128   EV582464   EV583776   EV583946   EV585173   EV586046   EV587058   EV589395   EV589748   EV589898   EV592650   EV592808   EV593734   EV593876   EV594960   EV595960   EV596327   EV596460   EV596851   EV597348   EV597450   EV597830   EV598274   EV598926   FE862787   FE862885   FE862938   FE863033   FE863126   FE863402   FE863430   GH739094   GH741682   GH779319   GH779814   GH779840   GO254341   GO254369
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VBU9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 13 -- 16   organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
lipid particle inferred from direct assay (Cermelli et al., 2006) ribosome inferred from direct assay (Alonso and Santaren, 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2551.975 Larval Midgut    3905.4 Larval Hindgut    3922.8 Larval Malpighian Tubules    4194.6 Larval Fat Body    6787.6 Larval Salivary Gland    6969.9 Larval Trachea    5571.05 Larval Carcass    4426.525 Adult Head    3944.7 Adult Eye    5354.1 Adult Brain    2473 Adult Thoracic-Abdominal Ganglion    3526.2 Adult Crop    5421 Adult Midgut    4880.7 Adult Hindgut    4456.4 Adult Malpighian Tubules    4655.6 Adult Fat Body    5076.6 Adult Salivary Gland    8589 Adult Heart    5899.05 Adult VirginFemale Spermatheca    5577.2 Adult InseminatedFemale Spermatheca    5866.6 Adult Ovary    3067.1 Adult Testis    1110.5 Adult Male Accessory Gland    7448.4 Adult Carcass    4918.1 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2551.975) Larval Midgut  (3905.4) Larval Hindgut  (3922.8) Larval Malpighian Tubules  (4194.6) Larval Fat Body  (6787.6) Larval Salivary Gland  (6969.9) Larval Trachea  (5571.05) Larval Carcass  (4426.525) Adult Head  (3944.7) Adult Eye  (5354.1) Adult Brain  (2473) Adult Thoracic-Abdominal Ganglion  (3526.2) Adult Crop  (5421) Adult Midgut  (4880.7) Adult Hindgut  (4456.4) Adult Malpighian Tubules  (4655.6) Adult Fat Body  (5076.6) Adult Salivary Gland  (8589) Adult Heart  (5899.05) Adult VirginFemale Spermatheca  (5577.2) Adult InseminatedFemale Spermatheca  (5866.6) Adult Ovary  (3067.1) Adult Testis  (1110.5) Adult Male Accessory Gland  (7448.4) Adult Carcass  (4918.1) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2551.975) Larval Midgut  (3905.4) Larval Hindgut  (3922.8) Larval Malpighian Tubules  (4194.6) Larval Fat Body  (6787.6) Larval Salivary Gland  (6969.9) Larval Trachea  (5571.05) Larval Carcass  (4426.525) Adult Head  (3944.7) Adult Eye  (5354.1) Adult Brain  (2473) Adult Thoracic-Abdominal Ganglion  (3526.2) Adult Crop  (5421) Adult Midgut  (4880.7) Adult Hindgut  (4456.4) Adult Malpighian Tubules  (4655.6) Adult Fat Body  (5076.6) Adult Salivary Gland  (8589) Adult Heart  (5899.05) Adult VirginFemale Spermatheca  (5577.2) Adult InseminatedFemale Spermatheca  (5866.6) Adult Ovary  (3067.1) Adult Testis  (1110.5) Adult Male Accessory Gland  (7448.4) Adult Carcass  (4918.1) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2551.975 Larval Midgut    3905.4 Larval Hindgut    3922.8 Larval Malpighian Tubules    4194.6 Larval Fat Body    6787.6 Larval Salivary Gland    6969.9 Larval Trachea    5571.05 Larval Carcass    4426.525 Adult Head    3944.7 Adult Eye    5354.1 Adult Brain    2473 Adult Thoracic-Abdominal Ganglion    3526.2 Adult Crop    5421 Adult Midgut    4880.7 Adult Hindgut    4456.4 Adult Malpighian Tubules    4655.6 Adult Fat Body    5076.6 Adult Salivary Gland    8589 Adult Heart    5899.05 Adult VirginFemale Spermatheca    5577.2 Adult InseminatedFemale Spermatheca    5866.6 Adult Ovary    3067.1 Adult Testis    1110.5 Adult Male Accessory Gland    7448.4 Adult Carcass    4918.1 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    2551.975 Larval Midgut    3905.4 Larval Hindgut    3922.8 Larval Malpighian Tubules    4194.6 Larval Fat Body    6787.6 Larval Salivary Gland    6969.9 Larval Trachea    5571.05 Larval Carcass    4426.525 Adult Head    3944.7 Adult Eye    5354.1 Adult Brain    2473 Adult Thoracic-Abdominal Ganglion    3526.2 Adult Crop    5421 Adult Midgut    4880.7 Adult Hindgut    4456.4 Adult Malpighian Tubules    4655.6 Adult Fat Body    5076.6 Adult Salivary Gland    8589 Adult Heart    5899.05 Adult VirginFemale Spermatheca    5577.2 Adult InseminatedFemale Spermatheca    5866.6 Adult Ovary    3067.1 Adult Testis    1110.5 Adult Male Accessory Gland    7448.4 Adult Carcass    4918.1 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (2551.975) Larval Midgut  (3905.4) Larval Hindgut  (3922.8) Larval Malpighian Tubules  (4194.6) Larval Fat Body  (6787.6) Larval Salivary Gland  (6969.9) Larval Trachea  (5571.05) Larval Carcass  (4426.525) Adult Head  (3944.7) Adult Eye  (5354.1) Adult Brain  (2473) Adult Thoracic-Abdominal Ganglion  (3526.2) Adult Crop  (5421) Adult Midgut  (4880.7) Adult Hindgut  (4456.4) Adult Malpighian Tubules  (4655.6) Adult Fat Body  (5076.6) Adult Salivary Gland  (8589) Adult Heart  (5899.05) Adult VirginFemale Spermatheca  (5577.2) Adult InseminatedFemale Spermatheca  (5866.6) Adult Ovary  (3067.1) Adult Testis  (1110.5) Adult Male Accessory Gland  (7448.4) Adult Carcass  (4918.1) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System  (2551.975) Larval Midgut  (3905.4) Larval Hindgut  (3922.8) Larval Malpighian Tubules  (4194.6) Larval Fat Body  (6787.6) Larval Salivary Gland  (6969.9) Larval Trachea  (5571.05) Larval Carcass  (4426.525) Adult Head  (3944.7) Adult Eye  (5354.1) Adult Brain  (2473) Adult Thoracic-Abdominal Ganglion  (3526.2) Adult Crop  (5421) Adult Midgut  (4880.7) Adult Hindgut  (4456.4) Adult Malpighian Tubules  (4655.6) Adult Fat Body  (5076.6) Adult Salivary Gland  (8589) Adult Heart  (5899.05) Adult VirginFemale Spermatheca  (5577.2) Adult InseminatedFemale Spermatheca  (5866.6) Adult Ovary  (3067.1) Adult Testis  1110.5 Adult Male Accessory Gland  (7448.4) Adult Carcass  (4918.1) Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2551.975 Larval Midgut    3905.4 Larval Hindgut    3922.8 Larval Malpighian Tubules    4194.6 Larval Fat Body    6787.6 Larval Salivary Gland    6969.9 Larval Trachea    5571.05 Larval Carcass    4426.525 Adult Head    3944.7 Adult Eye    5354.1 Adult Brain    2473 Adult Thoracic-Abdominal Ganglion    3526.2 Adult Crop    5421 Adult Midgut    4880.7 Adult Hindgut    4456.4 Adult Malpighian Tubules    4655.6 Adult Fat Body    5076.6 Adult Salivary Gland    8589 Adult Heart    5899.05 Adult VirginFemale Spermatheca    5577.2 Adult InseminatedFemale Spermatheca    5866.6 Adult Ovary    3067.1 Adult Testis    1110.5 Adult Male Accessory Gland    7448.4 Adult Carcass    4918.1 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    3944.7   NA  Eye    5354.1   NA  Brain    2473   2551.975  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3526.2   NA  Crop    5421   3905.4  Midgut    4880.7   3922.8  Hindgut    4456.4   4194.6  Malpighian Tubules    4655.6   6787.6  Fat Body    5076.6   6969.9  Salivary Gland    8589   NA  Heart    5899.05   5571.05  Trachea    NA   NA  VirginFemale Spermatheca    5577.2   NA  InseminatedFemale Spermatheca    5866.6   NA  Ovary    3067.1   NA  Testis    1110.5   NA  Male Accessory Gland    7448.4   4426.525  Carcass    4918.1 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1112 central nervous system, larvae L3    863 central nervous system, pupae P8    448 head, virgin 1-day female    361 head, virgin 4-day female    570 head, virgin 20-day female    827 head, mated 1-day female    347 head, mated 4-day female    398 head, mated 20-day female    658 head, mated 1-day male    308 head, mated 4-day male    272 head, mated 20-day male    377 salivary gland, larvae L3 wandering    773 salivary gland, white prepupae    1072 digestive system, larvae L3 wandering    650 digestive system, 1-day adult    438 digestive system, 4-day adult    380 digestive system, 20-day adult    414 fat body, larvae L3 wandering    547 fat body, white prepupae    440 fat body, pupae P8    860 carcass, larvae L3 wandering    812 carcass, 1-day adult    346 carcass, 4-day adult    505 carcass, 20-day adult    694 ovary, virgin 4-day female    722 ovary, mated 4-day female    616 testis, mated 4-day male    323 accessory gland, mated 4-day male    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1112) central nervous system, larvae L3  (863) central nervous system, pupae P8  (448) head, virgin 1-day female  (361) head, virgin 4-day female  (570) head, virgin 20-day female  (827) head, mated 1-day female  (347) head, mated 4-day female  (398) head, mated 20-day female  (658) head, mated 1-day male  (308) head, mated 4-day male  (272) head, mated 20-day male  (377) salivary gland, larvae L3 wandering  (773) salivary gland, white prepupae  (1072) digestive system, larvae L3 wandering  (650) digestive system, 1-day adult  (438) digestive system, 4-day adult  (380) digestive system, 20-day adult  (414) fat body, larvae L3 wandering  (547) fat body, white prepupae  (440) fat body, pupae P8  (860) carcass, larvae L3 wandering  (812) carcass, 1-day adult  (346) carcass, 4-day adult  (505) carcass, 20-day adult  (694) ovary, virgin 4-day female  (722) ovary, mated 4-day female  (616) testis, mated 4-day male  (323) accessory gland, mated 4-day male  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1112) central nervous system, larvae L3  (863) central nervous system, pupae P8  (448) head, virgin 1-day female  (361) head, virgin 4-day female  (570) head, virgin 20-day female  (827) head, mated 1-day female  (347) head, mated 4-day female  (398) head, mated 20-day female  (658) head, mated 1-day male  (308) head, mated 4-day male  (272) head, mated 20-day male  (377) salivary gland, larvae L3 wandering  (773) salivary gland, white prepupae  (1072) digestive system, larvae L3 wandering  (650) digestive system, 1-day adult  (438) digestive system, 4-day adult  (380) digestive system, 20-day adult  (414) fat body, larvae L3 wandering  (547) fat body, white prepupae  (440) fat body, pupae P8  (860) carcass, larvae L3 wandering  (812) carcass, 1-day adult  (346) carcass, 4-day adult  (505) carcass, 20-day adult  (694) ovary, virgin 4-day female  (722) ovary, mated 4-day female  (616) testis, mated 4-day male  (323) accessory gland, mated 4-day male  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1112 central nervous system, larvae L3    863 central nervous system, pupae P8    448 head, virgin 1-day female    361 head, virgin 4-day female    570 head, virgin 20-day female    827 head, mated 1-day female    347 head, mated 4-day female    398 head, mated 20-day female    658 head, mated 1-day male    308 head, mated 4-day male    272 head, mated 20-day male    377 salivary gland, larvae L3 wandering    773 salivary gland, white prepupae    1072 digestive system, larvae L3 wandering    650 digestive system, 1-day adult    438 digestive system, 4-day adult    380 digestive system, 20-day adult    414 fat body, larvae L3 wandering    547 fat body, white prepupae    440 fat body, pupae P8    860 carcass, larvae L3 wandering    812 carcass, 1-day adult    346 carcass, 4-day adult    505 carcass, 20-day adult    694 ovary, virgin 4-day female    722 ovary, mated 4-day female    616 testis, mated 4-day male    323 accessory gland, mated 4-day male    527 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    1112 central nervous system, larvae L3    863 central nervous system, pupae P8    448 head, virgin 1-day female    361 head, virgin 4-day female    570 head, virgin 20-day female    827 head, mated 1-day female    347 head, mated 4-day female    398 head, mated 20-day female    658 head, mated 1-day male    308 head, mated 4-day male    272 head, mated 20-day male    377 salivary gland, larvae L3 wandering    773 salivary gland, white prepupae    1072 digestive system, larvae L3 wandering    650 digestive system, 1-day adult    438 digestive system, 4-day adult    380 digestive system, 20-day adult    414 fat body, larvae L3 wandering    547 fat body, white prepupae    440 fat body, pupae P8    860 carcass, larvae L3 wandering    812 carcass, 1-day adult    346 carcass, 4-day adult    505 carcass, 20-day adult    694 ovary, virgin 4-day female    722 ovary, mated 4-day female    616 testis, mated 4-day male    323 accessory gland, mated 4-day male    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1112) central nervous system, larvae L3  (863) central nervous system, pupae P8  (448) head, virgin 1-day female  (361) head, virgin 4-day female  (570) head, virgin 20-day female  (827) head, mated 1-day female  (347) head, mated 4-day female  (398) head, mated 20-day female  (658) head, mated 1-day male  (308) head, mated 4-day male  (272) head, mated 20-day male  (377) salivary gland, larvae L3 wandering  (773) salivary gland, white prepupae  (1072) digestive system, larvae L3 wandering  (650) digestive system, 1-day adult  (438) digestive system, 4-day adult  (380) digestive system, 20-day adult  (414) fat body, larvae L3 wandering  (547) fat body, white prepupae  (440) fat body, pupae P8  (860) carcass, larvae L3 wandering  (812) carcass, 1-day adult  (346) carcass, 4-day adult  (505) carcass, 20-day adult  (694) ovary, virgin 4-day female  (722) ovary, mated 4-day female  (616) testis, mated 4-day male  (323) accessory gland, mated 4-day male  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (1112) central nervous system, larvae L3  (863) central nervous system, pupae P8  (448) head, virgin 1-day female  (361) head, virgin 4-day female  (570) head, virgin 20-day female  (827) head, mated 1-day female  (347) head, mated 4-day female  (398) head, mated 20-day female  (658) head, mated 1-day male  (308) head, mated 4-day male  (272) head, mated 20-day male  (377) salivary gland, larvae L3 wandering  (773) salivary gland, white prepupae  (1072) digestive system, larvae L3 wandering  (650) digestive system, 1-day adult  (438) digestive system, 4-day adult  (380) digestive system, 20-day adult  (414) fat body, larvae L3 wandering  (547) fat body, white prepupae  (440) fat body, pupae P8  (860) carcass, larvae L3 wandering  (812) carcass, 1-day adult  (346) carcass, 4-day adult  (505) carcass, 20-day adult  (694) ovary, virgin 4-day female  (722) ovary, mated 4-day female  (616) testis, mated 4-day male  (323) accessory gland, mated 4-day male  (527) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    1112 central nervous system, larvae L3    863 central nervous system, pupae P8    448 head, virgin 1-day female    361 head, virgin 4-day female    570 head, virgin 20-day female    827 head, mated 1-day female    347 head, mated 4-day female    398 head, mated 20-day female    658 head, mated 1-day male    308 head, mated 4-day male    272 head, mated 20-day male    377 salivary gland, larvae L3 wandering    773 salivary gland, white prepupae    1072 digestive system, larvae L3 wandering    650 digestive system, 1-day adult    438 digestive system, 4-day adult    380 digestive system, 20-day adult    414 fat body, larvae L3 wandering    547 fat body, white prepupae    440 fat body, pupae P8    860 carcass, larvae L3 wandering    812 carcass, 1-day adult    346 carcass, 4-day adult    505 carcass, 20-day adult    694 ovary, virgin 4-day female    722 ovary, mated 4-day female    616 testis, mated 4-day male    323 accessory gland, mated 4-day male    527 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Very high expression at all stages of development. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    620 embryo 02-04hr    960 embryo 04-06hr    913 embryo 06-08hr    952 embryo 08-10hr    1124 embryo 10-12hr    1102 embryo 12-14hr    802 embryo 14-16hr    569 embryo 16-18hr    735 embryo 18-20hr    792 embryo 20-22hr    933 embryo 22-24hr    896 larva L1    770 larva L2    873 larva L3 12hr old    811 larva L3 puffstage 1-2    680 larva L3 puffstage 3-6    656 larva L3 puffstage 7-9    764 white prepupae new    659 white prepupae 12hr    590 white prepupae 24hr    625 pupae 2d postWPP    494 pupae 3d postWPP    347 pupae 4d postWPP    295 adult male 01day    284 adult male 05day    326 adult male 30day    254 adult female 01day    492 adult female 05day    715 adult female 30day    757 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (620) embryo 02-04hr  (960) embryo 04-06hr  (913) embryo 06-08hr  (952) embryo 08-10hr  (1124) embryo 10-12hr  (1102) embryo 12-14hr  (802) embryo 14-16hr  (569) embryo 16-18hr  (735) embryo 18-20hr  (792) embryo 20-22hr  (933) embryo 22-24hr  (896) larva L1  (770) larva L2  (873) larva L3 12hr old  (811) larva L3 puffstage 1-2  (680) larva L3 puffstage 3-6  (656) larva L3 puffstage 7-9  (764) white prepupae new  (659) white prepupae 12hr  (590) white prepupae 24hr  (625) pupae 2d postWPP  (494) pupae 3d postWPP  (347) pupae 4d postWPP  (295) adult male 01day  (284) adult male 05day  (326) adult male 30day  (254) adult female 01day  (492) adult female 05day  (715) adult female 30day  (757) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (620) embryo 02-04hr  (960) embryo 04-06hr  (913) embryo 06-08hr  (952) embryo 08-10hr  (1124) embryo 10-12hr  (1102) embryo 12-14hr  (802) embryo 14-16hr  (569) embryo 16-18hr  (735) embryo 18-20hr  (792) embryo 20-22hr  (933) embryo 22-24hr  (896) larva L1  (770) larva L2  (873) larva L3 12hr old  (811) larva L3 puffstage 1-2  (680) larva L3 puffstage 3-6  (656) larva L3 puffstage 7-9  (764) white prepupae new  (659) white prepupae 12hr  (590) white prepupae 24hr  (625) pupae 2d postWPP  (494) pupae 3d postWPP  (347) pupae 4d postWPP  (295) adult male 01day  (284) adult male 05day  (326) adult male 30day  (254) adult female 01day  (492) adult female 05day  (715) adult female 30day  (757) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    620 embryo 02-04hr    960 embryo 04-06hr    913 embryo 06-08hr    952 embryo 08-10hr    1124 embryo 10-12hr    1102 embryo 12-14hr    802 embryo 14-16hr    569 embryo 16-18hr    735 embryo 18-20hr    792 embryo 20-22hr    933 embryo 22-24hr    896 larva L1    770 larva L2    873 larva L3 12hr old    811 larva L3 puffstage 1-2    680 larva L3 puffstage 3-6    656 larva L3 puffstage 7-9    764 white prepupae new    659 white prepupae 12hr    590 white prepupae 24hr    625 pupae 2d postWPP    494 pupae 3d postWPP    347 pupae 4d postWPP    295 adult male 01day    284 adult male 05day    326 adult male 30day    254 adult female 01day    492 adult female 05day    715 adult female 30day    757 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    620 embryo 02-04hr    960 embryo 04-06hr    913 embryo 06-08hr    952 embryo 08-10hr    1124 embryo 10-12hr    1102 embryo 12-14hr    802 embryo 14-16hr    569 embryo 16-18hr    735 embryo 18-20hr    792 embryo 20-22hr    933 embryo 22-24hr    896 larva L1    770 larva L2    873 larva L3 12hr old    811 larva L3 puffstage 1-2    680 larva L3 puffstage 3-6    656 larva L3 puffstage 7-9    764 white prepupae new    659 white prepupae 12hr    590 white prepupae 24hr    625 pupae 2d postWPP    494 pupae 3d postWPP    347 pupae 4d postWPP    295 adult male 01day    284 adult male 05day    326 adult male 30day    254 adult female 01day    492 adult female 05day    715 adult female 30day    757 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (620) embryo 02-04hr  (960) embryo 04-06hr  (913) embryo 06-08hr  (952) embryo 08-10hr  (1124) embryo 10-12hr  (1102) embryo 12-14hr  (802) embryo 14-16hr  (569) embryo 16-18hr  (735) embryo 18-20hr  (792) embryo 20-22hr  (933) embryo 22-24hr  (896) larva L1  (770) larva L2  (873) larva L3 12hr old  (811) larva L3 puffstage 1-2  (680) larva L3 puffstage 3-6  (656) larva L3 puffstage 7-9  (764) white prepupae new  (659) white prepupae 12hr  (590) white prepupae 24hr  (625) pupae 2d postWPP  (494) pupae 3d postWPP  (347) pupae 4d postWPP  (295) adult male 01day  (284) adult male 05day  (326) adult male 30day  (254) adult female 01day  (492) adult female 05day  (715) adult female 30day  (757) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  (620) embryo 02-04hr  (960) embryo 04-06hr  (913) embryo 06-08hr  (952) embryo 08-10hr  (1124) embryo 10-12hr  (1102) embryo 12-14hr  (802) embryo 14-16hr  (569) embryo 16-18hr  (735) embryo 18-20hr  (792) embryo 20-22hr  (933) embryo 22-24hr  (896) larva L1  (770) larva L2  (873) larva L3 12hr old  (811) larva L3 puffstage 1-2  (680) larva L3 puffstage 3-6  (656) larva L3 puffstage 7-9  (764) white prepupae new  (659) white prepupae 12hr  (590) white prepupae 24hr  (625) pupae 2d postWPP  (494) pupae 3d postWPP  (347) pupae 4d postWPP  (295) adult male 01day  (284) adult male 05day  (326) adult male 30day  (254) adult female 01day  (492) adult female 05day  (715) adult female 30day  (757) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    620 embryo 02-04hr    960 embryo 04-06hr    913 embryo 06-08hr    952 embryo 08-10hr    1124 embryo 10-12hr    1102 embryo 12-14hr    802 embryo 14-16hr    569 embryo 16-18hr    735 embryo 18-20hr    792 embryo 20-22hr    933 embryo 22-24hr    896 larva L1    770 larva L2    873 larva L3 12hr old    811 larva L3 puffstage 1-2    680 larva L3 puffstage 3-6    656 larva L3 puffstage 7-9    764 white prepupae new    659 white prepupae 12hr    590 white prepupae 24hr    625 pupae 2d postWPP    494 pupae 3d postWPP    347 pupae 4d postWPP    295 adult male 01day    284 adult male 05day    326 adult male 30day    254 adult female 01day    492 adult female 05day    715 adult female 30day    757 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1821 Schneider line 2 Sg4    1517 embryonic 1182-4H    1512 embryonic GM2    1200 embryonic Kc167    2083 embryonic S1    1505 embryonic S3    1257 leg disc CME L1    1448 wing disc CME-W2    1777 wing disc ML-DmD8    2263 wing disc ML-DmD9    1246 wing disc ML-DmD16-c3    1468 wing disc ML-DmD21    2053 wing disc ML-DmD32    1926 haltere disc ML-DmD17-c3    1120 eye-antennal disc ML-DmD11    2846 antennal disc ML-DmD20-c5    2615 mixed discs ML-DmD4-c1    1755 CNS ML-DmBG1-c1    2153 CNS ML-DmBG2-c2    1507 tumorous blood cells mbn2    1231 ovary fGS/OSS    559 ovary OSC    879 ovary OSS    226 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1821) Schneider line 2 Sg4  (1517) embryonic 1182-4H  (1512) embryonic GM2  (1200) embryonic Kc167  (2083) embryonic S1  (1505) embryonic S3  (1257) leg disc CME L1  (1448) wing disc CME-W2  (1777) wing disc ML-DmD8  (2263) wing disc ML-DmD9  (1246) wing disc ML-DmD16-c3  (1468) wing disc ML-DmD21  (2053) wing disc ML-DmD32  (1926) haltere disc ML-DmD17-c3  (1120) eye-antennal disc ML-DmD11  (2846) antennal disc ML-DmD20-c5  (2615) mixed discs ML-DmD4-c1  (1755) CNS ML-DmBG1-c1  (2153) CNS ML-DmBG2-c2  (1507) tumorous blood cells mbn2  (1231) ovary fGS/OSS  (559) ovary OSC  (879) ovary OSS  (226) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1821) Schneider line 2 Sg4  (1517) embryonic 1182-4H  (1512) embryonic GM2  (1200) embryonic Kc167  (2083) embryonic S1  (1505) embryonic S3  (1257) leg disc CME L1  (1448) wing disc CME-W2  (1777) wing disc ML-DmD8  (2263) wing disc ML-DmD9  (1246) wing disc ML-DmD16-c3  (1468) wing disc ML-DmD21  (2053) wing disc ML-DmD32  (1926) haltere disc ML-DmD17-c3  (1120) eye-antennal disc ML-DmD11  (2846) antennal disc ML-DmD20-c5  (2615) mixed discs ML-DmD4-c1  (1755) CNS ML-DmBG1-c1  (2153) CNS ML-DmBG2-c2  (1507) tumorous blood cells mbn2  (1231) ovary fGS/OSS  (559) ovary OSC  (879) ovary OSS  (226) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1821 Schneider line 2 Sg4    1517 embryonic 1182-4H    1512 embryonic GM2    1200 embryonic Kc167    2083 embryonic S1    1505 embryonic S3    1257 leg disc CME L1    1448 wing disc CME-W2    1777 wing disc ML-DmD8    2263 wing disc ML-DmD9    1246 wing disc ML-DmD16-c3    1468 wing disc ML-DmD21    2053 wing disc ML-DmD32    1926 haltere disc ML-DmD17-c3    1120 eye-antennal disc ML-DmD11    2846 antennal disc ML-DmD20-c5    2615 mixed discs ML-DmD4-c1    1755 CNS ML-DmBG1-c1    2153 CNS ML-DmBG2-c2    1507 tumorous blood cells mbn2    1231 ovary fGS/OSS    559 ovary OSC    879 ovary OSS    226 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    1821 Schneider line 2 Sg4    1517 embryonic 1182-4H    1512 embryonic GM2    1200 embryonic Kc167    2083 embryonic S1    1505 embryonic S3    1257 leg disc CME L1    1448 wing disc CME-W2    1777 wing disc ML-DmD8    2263 wing disc ML-DmD9    1246 wing disc ML-DmD16-c3    1468 wing disc ML-DmD21    2053 wing disc ML-DmD32    1926 haltere disc ML-DmD17-c3    1120 eye-antennal disc ML-DmD11    2846 antennal disc ML-DmD20-c5    2615 mixed discs ML-DmD4-c1    1755 CNS ML-DmBG1-c1    2153 CNS ML-DmBG2-c2    1507 tumorous blood cells mbn2    1231 ovary fGS/OSS    559 ovary OSC    879 ovary OSS    226 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (1821) Schneider line 2 Sg4  (1517) embryonic 1182-4H  (1512) embryonic GM2  (1200) embryonic Kc167  (2083) embryonic S1  (1505) embryonic S3  (1257) leg disc CME L1  (1448) wing disc CME-W2  (1777) wing disc ML-DmD8  (2263) wing disc ML-DmD9  (1246) wing disc ML-DmD16-c3  (1468) wing disc ML-DmD21  (2053) wing disc ML-DmD32  (1926) haltere disc ML-DmD17-c3  (1120) eye-antennal disc ML-DmD11  (2846) antennal disc ML-DmD20-c5  (2615) mixed discs ML-DmD4-c1  (1755) CNS ML-DmBG1-c1  (2153) CNS ML-DmBG2-c2  (1507) tumorous blood cells mbn2  (1231) ovary fGS/OSS  (559) ovary OSC  (879) ovary OSS  (226) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (1821) Schneider line 2 Sg4  (1517) embryonic 1182-4H  (1512) embryonic GM2  (1200) embryonic Kc167  (2083) embryonic S1  (1505) embryonic S3  (1257) leg disc CME L1  (1448) wing disc CME-W2  (1777) wing disc ML-DmD8  (2263) wing disc ML-DmD9  (1246) wing disc ML-DmD16-c3  (1468) wing disc ML-DmD21  (2053) wing disc ML-DmD32  (1926) haltere disc ML-DmD17-c3  (1120) eye-antennal disc ML-DmD11  (2846) antennal disc ML-DmD20-c5  (2615) mixed discs ML-DmD4-c1  (1755) CNS ML-DmBG1-c1  (2153) CNS ML-DmBG2-c2  (1507) tumorous blood cells mbn2  (1231) ovary fGS/OSS  (559) ovary OSC  (879) ovary OSS  (226) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    1821 Schneider line 2 Sg4    1517 embryonic 1182-4H    1512 embryonic GM2    1200 embryonic Kc167    2083 embryonic S1    1505 embryonic S3    1257 leg disc CME L1    1448 wing disc CME-W2    1777 wing disc ML-DmD8    2263 wing disc ML-DmD9    1246 wing disc ML-DmD16-c3    1468 wing disc ML-DmD21    2053 wing disc ML-DmD32    1926 haltere disc ML-DmD17-c3    1120 eye-antennal disc ML-DmD11    2846 antennal disc ML-DmD20-c5    2615 mixed discs ML-DmD4-c1    1755 CNS ML-DmBG1-c1    2153 CNS ML-DmBG2-c2    1507 tumorous blood cells mbn2    1231 ovary fGS/OSS    559 ovary OSC    879 ovary OSS    226 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    339 cold shock, 4-day adult    247 heat shock, 4-day adult    595 Cadmium 50 mM 6 hrs, larvae L3    747 Cadmium 50 mM 12 hrs, larvae L3    986 Cadmium 50 mM 48 hrs, 4-day adult    626 Cadmium 100 mM 48 hrs, 4-day adult    774 Copper 0.5 mM 12 hrs, larvae L3    359 Copper 15 mM 48 hrs, 4-day adult    480 Zinc 5 mM 12 hrs, larvae L3    334 Zinc 4.5 mM 48 hrs, 4-day adult    368 Ethanol 2.5% 3 hrs, larvae L3    656 Ethanol 5% 3 hrs, larvae L3    948 Ethanol 10% 3 hrs, larvae L3    808 Caffeine 1.5 mg/ml 4 hrs, larvae L3    982 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    741 Caffeine 25 mg/ml 48 hrs, 4-day adult    262 Paraquat 5 mM 48 hrs, 4-day adult    676 Paraquat 10 mM 48 hrs, 4-day adult    624 Rotenone 2 μg 12 hrs, larvae L3    1008 Rotenone 8 μg 12 hrs, larvae L3    1233 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (339) cold shock, 4-day adult  (247) heat shock, 4-day adult  (595) Cadmium 50 mM 6 hrs, larvae L3  (747) Cadmium 50 mM 12 hrs, larvae L3  (986) Cadmium 50 mM 48 hrs, 4-day adult  (626) Cadmium 100 mM 48 hrs, 4-day adult  (774) Copper 0.5 mM 12 hrs, larvae L3  (359) Copper 15 mM 48 hrs, 4-day adult  (480) Zinc 5 mM 12 hrs, larvae L3  (334) Zinc 4.5 mM 48 hrs, 4-day adult  (368) Ethanol 2.5% 3 hrs, larvae L3  (656) Ethanol 5% 3 hrs, larvae L3  (948) Ethanol 10% 3 hrs, larvae L3  (808) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (982) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (741) Caffeine 25 mg/ml 48 hrs, 4-day adult  (262) Paraquat 5 mM 48 hrs, 4-day adult  (676) Paraquat 10 mM 48 hrs, 4-day adult  (624) Rotenone 2 μg 12 hrs, larvae L3  (1008) Rotenone 8 μg 12 hrs, larvae L3  (1233) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (339) cold shock, 4-day adult  (247) heat shock, 4-day adult  (595) Cadmium 50 mM 6 hrs, larvae L3  (747) Cadmium 50 mM 12 hrs, larvae L3  (986) Cadmium 50 mM 48 hrs, 4-day adult  (626) Cadmium 100 mM 48 hrs, 4-day adult  (774) Copper 0.5 mM 12 hrs, larvae L3  (359) Copper 15 mM 48 hrs, 4-day adult  (480) Zinc 5 mM 12 hrs, larvae L3  (334) Zinc 4.5 mM 48 hrs, 4-day adult  (368) Ethanol 2.5% 3 hrs, larvae L3  (656) Ethanol 5% 3 hrs, larvae L3  (948) Ethanol 10% 3 hrs, larvae L3  (808) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (982) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (741) Caffeine 25 mg/ml 48 hrs, 4-day adult  (262) Paraquat 5 mM 48 hrs, 4-day adult  (676) Paraquat 10 mM 48 hrs, 4-day adult  (624) Rotenone 2 μg 12 hrs, larvae L3  (1008) Rotenone 8 μg 12 hrs, larvae L3  (1233) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    339 cold shock, 4-day adult    247 heat shock, 4-day adult    595 Cadmium 50 mM 6 hrs, larvae L3    747 Cadmium 50 mM 12 hrs, larvae L3    986 Cadmium 50 mM 48 hrs, 4-day adult    626 Cadmium 100 mM 48 hrs, 4-day adult    774 Copper 0.5 mM 12 hrs, larvae L3    359 Copper 15 mM 48 hrs, 4-day adult    480 Zinc 5 mM 12 hrs, larvae L3    334 Zinc 4.5 mM 48 hrs, 4-day adult    368 Ethanol 2.5% 3 hrs, larvae L3    656 Ethanol 5% 3 hrs, larvae L3    948 Ethanol 10% 3 hrs, larvae L3    808 Caffeine 1.5 mg/ml 4 hrs, larvae L3    982 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    741 Caffeine 25 mg/ml 48 hrs, 4-day adult    262 Paraquat 5 mM 48 hrs, 4-day adult    676 Paraquat 10 mM 48 hrs, 4-day adult    624 Rotenone 2 μg 12 hrs, larvae L3    1008 Rotenone 8 μg 12 hrs, larvae L3    1233 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    339 cold shock, 4-day adult    247 heat shock, 4-day adult    595 Cadmium 50 mM 6 hrs, larvae L3    747 Cadmium 50 mM 12 hrs, larvae L3    986 Cadmium 50 mM 48 hrs, 4-day adult    626 Cadmium 100 mM 48 hrs, 4-day adult    774 Copper 0.5 mM 12 hrs, larvae L3    359 Copper 15 mM 48 hrs, 4-day adult    480 Zinc 5 mM 12 hrs, larvae L3    334 Zinc 4.5 mM 48 hrs, 4-day adult    368 Ethanol 2.5% 3 hrs, larvae L3    656 Ethanol 5% 3 hrs, larvae L3    948 Ethanol 10% 3 hrs, larvae L3    808 Caffeine 1.5 mg/ml 4 hrs, larvae L3    982 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    741 Caffeine 25 mg/ml 48 hrs, 4-day adult    262 Paraquat 5 mM 48 hrs, 4-day adult    676 Paraquat 10 mM 48 hrs, 4-day adult    624 Rotenone 2 μg 12 hrs, larvae L3    1008 Rotenone 8 μg 12 hrs, larvae L3    1233 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (339) cold shock, 4-day adult  (247) heat shock, 4-day adult  (595) Cadmium 50 mM 6 hrs, larvae L3  (747) Cadmium 50 mM 12 hrs, larvae L3  (986) Cadmium 50 mM 48 hrs, 4-day adult  (626) Cadmium 100 mM 48 hrs, 4-day adult  (774) Copper 0.5 mM 12 hrs, larvae L3  (359) Copper 15 mM 48 hrs, 4-day adult  (480) Zinc 5 mM 12 hrs, larvae L3  (334) Zinc 4.5 mM 48 hrs, 4-day adult  (368) Ethanol 2.5% 3 hrs, larvae L3  (656) Ethanol 5% 3 hrs, larvae L3  (948) Ethanol 10% 3 hrs, larvae L3  (808) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (982) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (741) Caffeine 25 mg/ml 48 hrs, 4-day adult  (262) Paraquat 5 mM 48 hrs, 4-day adult  (676) Paraquat 10 mM 48 hrs, 4-day adult  (624) Rotenone 2 μg 12 hrs, larvae L3  (1008) Rotenone 8 μg 12 hrs, larvae L3  (1233) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (339) cold shock, 4-day adult  (247) heat shock, 4-day adult  (595) Cadmium 50 mM 6 hrs, larvae L3  (747) Cadmium 50 mM 12 hrs, larvae L3  (986) Cadmium 50 mM 48 hrs, 4-day adult  (626) Cadmium 100 mM 48 hrs, 4-day adult  (774) Copper 0.5 mM 12 hrs, larvae L3  (359) Copper 15 mM 48 hrs, 4-day adult  (480) Zinc 5 mM 12 hrs, larvae L3  (334) Zinc 4.5 mM 48 hrs, 4-day adult  (368) Ethanol 2.5% 3 hrs, larvae L3  (656) Ethanol 5% 3 hrs, larvae L3  (948) Ethanol 10% 3 hrs, larvae L3  (808) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (982) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (741) Caffeine 25 mg/ml 48 hrs, 4-day adult  (262) Paraquat 5 mM 48 hrs, 4-day adult  (676) Paraquat 10 mM 48 hrs, 4-day adult  (624) Rotenone 2 μg 12 hrs, larvae L3  (1008) Rotenone 8 μg 12 hrs, larvae L3  (1233) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    339 cold shock, 4-day adult    247 heat shock, 4-day adult    595 Cadmium 50 mM 6 hrs, larvae L3    747 Cadmium 50 mM 12 hrs, larvae L3    986 Cadmium 50 mM 48 hrs, 4-day adult    626 Cadmium 100 mM 48 hrs, 4-day adult    774 Copper 0.5 mM 12 hrs, larvae L3    359 Copper 15 mM 48 hrs, 4-day adult    480 Zinc 5 mM 12 hrs, larvae L3    334 Zinc 4.5 mM 48 hrs, 4-day adult    368 Ethanol 2.5% 3 hrs, larvae L3    656 Ethanol 5% 3 hrs, larvae L3    948 Ethanol 10% 3 hrs, larvae L3    808 Caffeine 1.5 mg/ml 4 hrs, larvae L3    982 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    741 Caffeine 25 mg/ml 48 hrs, 4-day adult    262 Paraquat 5 mM 48 hrs, 4-day adult    676 Paraquat 10 mM 48 hrs, 4-day adult    624 Rotenone 2 μg 12 hrs, larvae L3    1008 Rotenone 8 μg 12 hrs, larvae L3    1233 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_22 mE1_20_mRNA_expression_cluster_01
External Data & Images
Linkouts	BDGP expression data • LD37859 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039300 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10423-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of RpS27 Class Mutagen Stocks Known lesion RpS27G5311 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RpS27 Class Mutagen Stocks Known lesion RpS27HMS01581 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpS27KK108788 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes RpS27GD16554 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)FDD-0089346 (DrosDel Project, 2008.11.14) Df(3R)FDD-0247625 (DrosDel Project, 2008.11.14) Df(3R)FDD-0247627 (DrosDel Project, 2008.11.14)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD16554} NA P{KK108788} NA P{TRiP.HMS01581} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}RpS27G5311 NA
Gene Ontology: Function, Process & Cellular Component ( 5 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from direct assay (Alonso and Santaren, 2006)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
lipid particle inferred from direct assay (Cermelli et al., 2006) ribosome inferred from direct assay (Alonso and Santaren, 2006)
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
structural constituent of ribosome inferred from sequence or structural similarity with Saccharomyces RPS27B (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred by curator from GO:0003735 (Alonso and Santaren, 2006) inferred from electronic annotation with InterPro:IPR000592, InterPro:IPR011332 (FlyBase Curators et al., 2004-)
Cellular Component
CV term Evidence References
cytosolic small ribosomal subunit inferred from sequence or structural similarity with Saccharomyces RPS27B (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RpS27 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 67958 DroID - A comprehensive database of gene and protein interactions. • FBgn0039300 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43039
Orthologs
OrthoDB Orthologs (45) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WM5FF Dipteran inclusive ortholog search EOG6575H7 Insect inclusive ortholog search EOG6189KD Arthropod inclusive ortholog search EOG6HHMKC Metazoa inclusive ortholog search EOG67MDTW
Orthologs in Drosophila Species (EOG6WM5FF)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RpS27     Drosophila simulans   Dsim\GD18221 Y   Drosophila sechellia   Dsec\GM17738 Y   Drosophila erecta   Dere\GG12272 Y   Drosophila yakuba   Dyak\GE10722 Y   Drosophila ananassae   Dana\GF17433 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA27572 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10310     Drosophila persimilis   Dper\GL12615 Y   Drosophila willistoni   Dwil\GK14300 Y   Drosophila virilis   Dvir\GJ24684 Y   Drosophila mojavensis   Dmoj\GI22987 Y   Drosophila grimshawi   Dgri\GH19510 Y
Orthologs in non-Drosophila Dipterans (EOG6575H7)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Anopheles gambiae Malaria mosquito  Agam\AGAP007157   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ005652
Orthologs in non-Dipteran Insects (EOG6189KD)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB50723   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG004377   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10936   Atta cephalotes Leafcutter ant  Acep\ACEP20122   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17019   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL19688   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL15770   Linepithema humile Argentine ant  Lhum\LH13958   Pogonomyrmex barbatus Red harvester ant  Pbar\PB26042   Solenopsis invicta Red fire ant  Sinv\SINV11281   Acyrthosiphon pisum Pea aphid  Apim\ACYPI007238   Bombyx mori Silkmoth  Bmor\RpS27   Pediculus humanus Human body louse  Phum\PHUM450180   Tribolium castaneum Red flour beetle  Tcas\GLEAN_15299
Orthologs in non-Insect Arthropods (EOG6HHMKC)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_308217   Ixodes scapularis Deer tick  Isca\ISCW012954
Orthologs in non-Arthropod Metazoa (EOG67MDTW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\rps-27   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_006034gn   Danio rerio Zebrafish  Drer\zgc:73262   Danio rerio Zebrafish  Drer\zgc:136826   Danio rerio Zebrafish  Drer\CH211-39A7.2   Xenopus tropicalis Western clawed frog  Xtro\rps27   Gallus gallus Domestic chicken  Ggal\RPS27L   Mus musculus House mouse  Mmus\Gm17241   Mus musculus House mouse  Mmus\Rps27   Mus musculus House mouse  Mmus\Rps27   Rattus norvegicus Norway rat  Rnor\LOC100362405   Rattus norvegicus Norway rat  Rnor\Rps27   Homo sapiens Human  Hsap\RPS27   Homo sapiens Human  Hsap\RPS27L
Human Orthologs (2)
Gene OMIM HGNC Hsap\RPS27     Hsap\RPS27L
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD18221 Drosophila sechellia Dsec\GM17738 Drosophila erecta Dere\GG12272 Drosophila yakuba Dyak\GE10722 Drosophila ananassae Dana\GF17433 Drosophila pseudoobscura pseudoobscura Dpse\GA27572 Drosophila persimilis Dper\GL12615 Drosophila willistoni Dwil\GK14300 Drosophila virilis Dvir\GJ24684 Drosophila mojavensis Dmoj\GI22987 Drosophila grimshawi Dgri\GH19510
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	31793 w1118; P{EP}RpS27G5311/TM6C, Sb1 36692 y1 sc* v1; P{TRiP.HMS01581}attP2
VDRC	v107108 P{KK108788}VIE-260B
Genomic Clones ( 3 )
	BACR06L08 BACR10P10 BACR17E12 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 389 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD37859
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05201 AT14805 GH04601 GH13310 GH15888 GM03263 GM09942 GM10443 GM12259 GM12571 GM12988 GM15185 GM15454 GM18074 GM19780 GM23650 GM23823 GM24972 GM26353 GM26373 GM27212 GM27236 GM27605 GM27754 GM28921 GM31722 LD31835 LD35139 LD36086 LD44172 LD47727 LP02578 LP17814 LP19287 RE03601 RE04246 RE06136 RE08571 RE15764 RE19276 RE24178 RE28227 RE28229 RE32629 RE34167 RE36193 RE36311 RE38694 RE39892 RE41160 RE42034 RE44439 RE44992 RE48078 RE53006 RE59426 RE63943 RE64850 RE67678 RE68148 RE68425 RE68449 RE69424 RE69680 RE71880 RE74894 RH04162 RH05644 RH09866 RH10230 RH10772 RH11364 RH11876 RH12203 RH14911 RH15011 RH15807 RH15964 RH16017 RH16067 RH19158 RH26306 RH27625 RH30344 RH32171 RH33931 RH36079 RH36155 RH37388 RH37858 RH37862 RH38411 RH41731 RH43563 RH45233 RH45877 RH46090 RH50229 RH51648 RH52244 RH53851 RH54687 RH55081 RH55902 RH58989 RH59974 RH60769 RH61453 RH61763 RH63505 RH64208 RH64260 RH65492 RH65812 RH66059 RH66077 RH66403 RH69350 RH69706 RH70491 RH73773 SD04675 SD13657 SD13869 SD16874 SD23730 SD24480 SD26843
Other clones	2212 18864 43219 44655 54386 63530 64043 76466 80060 84333 286862 287094 287783 288135 288235 290944 291201 291572 292299 293213 293337 294179 294782 295333 295484 296012 299073 299316 299759 522354 542638 CK01.53A.D4 CK01.95C.H4 CK01.107A.H6 CK01.132A.E9 CK01.142D.D9 CK01.147A.E5 Dmel_dig_005489_0619_3605 Dmel_dig_005934_0665_2019 Dmel_dig_006104_0585_3466 Dmel_dig_006697_0587_1827 Dmel_dig_007042_0594_1468 Dmel_dig_007460_0693_2464 Dmel_dig_007895_0664_2211 Dmel_dig_008894_0638_1525 Dmel_dig_009833_0676_2142 Dmel_dig_010014_0618_0564 Dmel_dig_010162_0641_3495 Dmel_dig_010545_0712_3590 Dmel_dig_010661_0610_1241 Dmel_dig_010974_0679_0306 Dmel_dig_011840_0607_2137 Dmel_dig_012474_0686_3659 Dmel_dig_012575_0592_2773 Dmel_dig_012920_0661_2941 Dmel_dig_013913_0711_3658 Dmel_dig_015494_0656_1186 Dmel_dig_017121_0631_3167 Dmel_dig_017152_0671_1434 Dmel_dig_017197_0705_2756 Dmel_dig_017369_0698_3505 Dmel_neb_005158_0888_3570 Dmel_neb_006650_0951_0374 Dmel_neb_008026_0845_3648 Dmel_neb_009262_0599_3284 Dmel_neb_010075_0696_2669 Dmel_neb_010195_0327_1583 Dmel_neb_012044_0691_2922 Dmel_neb_012694_0885_1804 Dmel_neb_013839_0938_3230 Dmel_neb_013887_0601_1154 Dmel_neb_014180_0672_1281 Dmel_neb_014418_0950_2523 Dmel_neb_014516_0110_2455 Dmel_neb_014619_0390_1514 Dmel_neb_015064_0358_1221 Dmel_neb_015394_0946_1795 Dmel_neb_015675_0568_1350 Dmel_neb_015802_0919_0601 EC12604 EC13510 EC13831 EC32318 EC35261 EC35727 EC36002 EC36916 EC36927 EC39212 EC40890 EK042846 EK074362 EK089363 EK115915 EK120119 EK123448 EK133550 EK160147 EK162623 EK163758 EK166254 EK189341 EK190929 EK206413 EK212353 EK218930 EN01455 EN01857 EN03512 EN04663 EN04731 EN05202 EN05251 EN05438 EN06561 EN07304 EN07626 EN08349 EN08422 EN10735 EN10741 EN11021 EN11504 EN11509 EN11923 EN12424 EN13127 EN15510 EN15807 EN15839 EN16853 ESG0114b.B21_A12 ESG0115a.B21_B10 ESG0118d.B21_B05 ESG0118d.B21_F12 ESG0118d.B21_H08 FGA001E06 FGC003H03 FGC005E10 FGC006D10 FGC009F09 FGC009H12 FGC010F09 FGC013G02 FGC018G07 FGC019A07 FGC023H04 FGC025G04 FGC028F08 FGC029G06 FGC030D10 FGC031F02 FGC032G03 FGH105A01 FGH105G08 FGH107E08 FGH108E02 FGH109E08 FGH115D09 FGH119E11 FGH120B04 FGH120H11 FGH129D12 FGM103F11 FGM212H11 FGM213A02 FGM225H07 FGM232F02 FGM308A01 FGM320F04 FGM321F03 GH04512 GH13331 GH18741 IP13008 IP16837 IP16937 LD05473 LD35179 LP02334 LP04563 LP05247 RC0-DA0001-120700-026-D07 RE28712 RE30733 RE56851 RE63332 RE66186 RE66509 RE68510 RE69808 RE69923 RE72971 RH01295 RH02014 RH02352 RH02567 RH03893 RH04063 RH10833 RH13483 RH13567 RH14467 RH18332 RH19650 RH20951 RH20974 RH21015 RH21486 RH22308 RH23248 RH23666 RH23667 RH23820 RH24705 RH25185 RH25411 RH25611 RH26907 RH27146 RH27271 RH27628 RH29660 RH31481 RH31769 RH32032 RH32047 RH32116 RH33401 RH34943 RH36782 RH36972 RH37249 RH37968 RH38687 RH43416 RH43811 RH45246 RH46704 RH49061 RH49186 RH57562 RH60065 RH61454 RH64555 RH74485 RM06658 RM06758 RM06858 RM06958 RM07058 RM07258 RM07358 RP01153 RP01189 RP001010358 RP001011867 RP001017591 RP001036610 RP001048714
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039300 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43039
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG10423 anon-EST:Posey295 (Bayraktaroglu, 2000.11.2)
Additional comments	"RpS27" likely corresponds to "M(3)96C". (Marygold et al., 2007)
Other Comments
	Likely Minute gene. (Marygold et al., 2007) Deletions removing RpS27 but no other cytoplasmic ribosomal protein-encoding genes show Minute phenotypes. (Marygold et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143102 NM_001260372 RefSeq (Proteins) • NP_651359 NP_001247301 DDBJ / EMBL / GenBank • AAF56428 AAM50819 AF083321 AFH06618 AI135513 AI518369 AI944623 AY118959 Entrez Gene - A searchable database of RefSeq genes. • 43039 UniProtKB/TrEMBL • Q9VBU9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Ribosomal protein, zinc-binding domain (IPR011332) Ribosomal protein S27e (IPR000592) Ribosomal protein S27e, zinc-binding domain (IPR023407) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD37859
Linkouts
	BioGRID - A database of protein and genetic interactions • 67958 DroID - A comprehensive database of gene and protein interactions. • FBgn0039300 DRSC - Results from RNAi screens. • FBgn0039300 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039300 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG10423-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039300 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43039 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43039 modMine - Data generated by the modENCODE project. • FBgn0039300
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	anon-EST:Posey295   CG10423 (Foley and O'Farrell, 2004, Cermelli et al., 2006, Ni et al., 2011.7.19, Marygold et al., 2007, Keleman et al., 2009.8.5, Cammarato et al., 2011) Q9VBU9_DROME (Fukuyama et al., 2012) RpS27 (Cermelli et al., 2006, Marygold et al., 2007, Cook et al., 2012, Ladoukakis et al., 2011) Rp S27 (Alonso and Santaren, 2006)
Name Synonym	Ribosomal protein S27 (Ashburner and Marygold, 2004.7.2, Cammarato et al., 2011)
Secondary FlyBase IDs
	FBgn0025532
References ( 31 )
Generate a list of	All references relating to this gene ( 31 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 12 ) FlyBase analysis  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 4 )
	Cook et al., 2012, Genome Biol. 13(3): R21 The generation of chromosomal deletions to provide extensive coverage and subdivision of the Drosophila melanogaster genome. [FBrf0219066] Fukuyama et al., 2012, J. Proteomics 75(15): 4610--4619 On-bead tryptic proteolysis: An attractive procedure for LC-MS/MS analysis of the Drosophila caspase 8 protein complex during immune response against bacteria. [FBrf0218992] Booker et al., 2011, BMC Genomics 12: 50 False negative rates in Drosophila cell-based RNAi screens: a case study. [FBrf0212969] Ladoukakis et al., 2011, Genome Biol. 12(11): R118 Hundreds of putatively functional small open reading frames in Drosophila. [FBrf0218190] Show all research papers ...