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Gene Dmel\vps2

General Information
Symbol	Dmel\vps2	Species	D. melanogaster
Name	vps2	Annotation symbol	CG14542
Feature type	protein_coding_gene	FlyBase ID	FBgn0039402
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96F10-96F10	Sequence location	3R:21,878,543..21,879,850 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene vps2 is referred to in FlyBase by the symbol Dmel\vps2 (CG14542, FBgn0039402). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: protein transport. 5 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Snf7. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late larval stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult spermathecae, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult heart, adult fat body, adult ovary, adult male reproductive system, adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1623625_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of vps2. Gene sequence location is 3R:21878543..21879850.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96F10-96F10   Limits computationally determined from genome sequence between P{PZ}l(3)rQ197rQ197 and P{lacW}scribj7B3
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\vps2 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.48
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) vps2-RA FBtr0084967  NM_143198   1248   256
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein vps2-PA   FBpp0084340   27.3   256   5.26     NP_651455   AAF56559
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Snf7 (IPR005024)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56559   AI293204   AI944612   AW940619   AY094715 AAM11068   BF498656   BF501381   BI358418   BI363467   BI372733   BI376066   BI563650   BI580418   BI584868   BI586462   BI606133   BI608384   BI608540   BI610479   BI615293   BI621072   BI622598   BI623137   BI623732   BI626068   BI634717   BT003747   BX028206   BX029247   BX052169   BX068262   CA807685   CK605410   CK660706   CO181806   CO335349   CR938135   EC263465   EC266755   EV581224   EV589239   EV591359   FD586454   FD586474   FD586904   FD587062   FD587178   FD587571
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VBI3 Q8SXB1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, larval fat body, larval/adult salivary gland, larval trachea, adult spermathecae, larval carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult heart, adult fat body, adult ovary, adult male reproductive system, adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules    1319.9 Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut  (594) Larval Hindgut  (801.4) Larval Malpighian Tubules  (1319.9) Larval Fat Body  531.5 Larval Salivary Gland  (873) Larval Trachea  (765.95) Larval Carcass  (719.575) Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop  (578.4) Adult Midgut  (546.3) Adult Hindgut  (559) Adult Malpighian Tubules  (754.7) Adult Fat Body    361.2 Adult Salivary Gland  (578.3) Adult Heart    356.9 Adult VirginFemale Spermatheca  529.9 Adult InseminatedFemale Spermatheca  (552) Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules  (1319.9) Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules    1319.9 Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules    1319.9 Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut  594 Larval Hindgut  801.4 Larval Malpighian Tubules  (1319.9) Larval Fat Body  531.5 Larval Salivary Gland  (873) Larval Trachea  765.95 Larval Carcass  719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop  578.4 Adult Midgut  546.3 Adult Hindgut  559 Adult Malpighian Tubules  754.7 Adult Fat Body    361.2 Adult Salivary Gland  578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca  529.9 Adult InseminatedFemale Spermatheca  552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules  1319.9 Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    495.6 Larval Midgut    594 Larval Hindgut    801.4 Larval Malpighian Tubules    1319.9 Larval Fat Body    531.5 Larval Salivary Gland    873 Larval Trachea    765.95 Larval Carcass    719.575 Adult Head    358.5 Adult Eye    413.35 Adult Brain    324.7 Adult Thoracic-Abdominal Ganglion    480.5 Adult Crop    578.4 Adult Midgut    546.3 Adult Hindgut    559 Adult Malpighian Tubules    754.7 Adult Fat Body    361.2 Adult Salivary Gland    578.3 Adult Heart    356.9 Adult VirginFemale Spermatheca    529.9 Adult InseminatedFemale Spermatheca    552 Adult Ovary    371.8 Adult Testis    172.8 Adult Male Accessory Gland    438.3 Adult Carcass    327.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    358.5   NA  Eye    413.35   NA  Brain    324.7   495.6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    480.5   NA  Crop    578.4   594  Midgut    546.3   801.4  Hindgut    559   1319.9  Malpighian Tubules    754.7   531.5  Fat Body    361.2   873  Salivary Gland    578.3   NA  Heart    356.9   765.95  Trachea    NA   NA  VirginFemale Spermatheca    529.9   NA  InseminatedFemale Spermatheca    552   NA  Ovary    371.8   NA  Testis    172.8   NA  Male Accessory Gland    438.3   719.575  Carcass    327.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering    111 digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (32) central nervous system, larvae L3  (44) central nervous system, pupae P8  (30) head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female  26 head, mated 20-day female    13 head, mated 1-day male  (29) head, mated 4-day male  (37) head, mated 20-day male  (35) salivary gland, larvae L3 wandering  (35) salivary gland, white prepupae  (88) digestive system, larvae L3 wandering  (111) digestive system, 1-day adult  (50) digestive system, 4-day adult  (44) digestive system, 20-day adult  (38) fat body, larvae L3 wandering    25 fat body, white prepupae  (33) fat body, pupae P8    17 carcass, larvae L3 wandering  (54) carcass, 1-day adult  (29) carcass, 4-day adult  26 carcass, 20-day adult    19 ovary, virgin 4-day female  (34) ovary, mated 4-day female  (37) testis, mated 4-day male  (34) accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering  (111) digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering    111 digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering    111 digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  32 central nervous system, larvae L3  (44) central nervous system, pupae P8  30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female  26 head, mated 20-day female    13 head, mated 1-day male  29 head, mated 4-day male  (37) head, mated 20-day male  (35) salivary gland, larvae L3 wandering  (35) salivary gland, white prepupae  (88) digestive system, larvae L3 wandering  (111) digestive system, 1-day adult  (50) digestive system, 4-day adult  (44) digestive system, 20-day adult  (38) fat body, larvae L3 wandering    25 fat body, white prepupae  (33) fat body, pupae P8    17 carcass, larvae L3 wandering  (54) carcass, 1-day adult  29 carcass, 4-day adult  26 carcass, 20-day adult    19 ovary, virgin 4-day female  (34) ovary, mated 4-day female  (37) testis, mated 4-day male  (34) accessory gland, mated 4-day male  26 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering  111 digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    32 central nervous system, larvae L3    44 central nervous system, pupae P8    30 head, virgin 1-day female    22 head, virgin 4-day female    22 head, virgin 20-day female    15 head, mated 1-day female    19 head, mated 4-day female    26 head, mated 20-day female    13 head, mated 1-day male    29 head, mated 4-day male    37 head, mated 20-day male    35 salivary gland, larvae L3 wandering    35 salivary gland, white prepupae    88 digestive system, larvae L3 wandering    111 digestive system, 1-day adult    50 digestive system, 4-day adult    44 digestive system, 20-day adult    38 fat body, larvae L3 wandering    25 fat body, white prepupae    33 fat body, pupae P8    17 carcass, larvae L3 wandering    54 carcass, 1-day adult    29 carcass, 4-day adult    26 carcass, 20-day adult    19 ovary, virgin 4-day female    34 ovary, mated 4-day female    37 testis, mated 4-day male    34 accessory gland, mated 4-day male    26 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during late larval stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (28) embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr  (29) embryo 08-10hr  (29) embryo 10-12hr  (42) embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr  (27) larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2  (31) larva L3 puffstage 3-6  (43) larva L3 puffstage 7-9  (56) white prepupae new  (59) white prepupae 12hr  (50) white prepupae 24hr  (41) pupae 2d postWPP  (27) pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day  26 adult female 30day  (28) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr  29 embryo 08-10hr  29 embryo 10-12hr  (42) embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr  27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2  31 larva L3 puffstage 3-6  (43) larva L3 puffstage 7-9  (56) white prepupae new  (59) white prepupae 12hr  (50) white prepupae 24hr  (41) pupae 2d postWPP  27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day  26 adult female 30day  28 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    28 embryo 02-04hr    15 embryo 04-06hr    23 embryo 06-08hr    29 embryo 08-10hr    29 embryo 10-12hr    42 embryo 12-14hr    23 embryo 14-16hr    17 embryo 16-18hr    18 embryo 18-20hr    24 embryo 20-22hr    24 embryo 22-24hr    27 larva L1    18 larva L2    19 larva L3 12hr old    19 larva L3 puffstage 1-2    31 larva L3 puffstage 3-6    43 larva L3 puffstage 7-9    56 white prepupae new    59 white prepupae 12hr    50 white prepupae 24hr    41 pupae 2d postWPP    27 pupae 3d postWPP    21 pupae 4d postWPP    17 adult male 01day    21 adult male 05day    22 adult male 30day    22 adult female 01day    21 adult female 05day    26 adult female 30day    28 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    183 Schneider line 2 Sg4    118 embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167    159 embryonic S1    87 embryonic S3    56 leg disc CME L1    108 wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21    127 wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1    118 CNS ML-DmBG2-c2    101 tumorous blood cells mbn2    87 ovary fGS/OSS    108 ovary OSC    68 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (183) Schneider line 2 Sg4  (118) embryonic 1182-4H  (82) embryonic GM2  (81) embryonic Kc167  (159) embryonic S1  (87) embryonic S3  (56) leg disc CME L1  (108) wing disc CME-W2  (92) wing disc ML-DmD8  (67) wing disc ML-DmD9  (71) wing disc ML-DmD16-c3  (77) wing disc ML-DmD21  (127) wing disc ML-DmD32  (87) haltere disc ML-DmD17-c3  (74) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (75) mixed discs ML-DmD4-c1  (91) CNS ML-DmBG1-c1  (118) CNS ML-DmBG2-c2  (101) tumorous blood cells mbn2  (87) ovary fGS/OSS  (108) ovary OSC  (68) ovary OSS  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (183) Schneider line 2 Sg4  (118) embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167  (159) embryonic S1    87 embryonic S3    56 leg disc CME L1  (108) wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21  (127) wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1  (118) CNS ML-DmBG2-c2  101 tumorous blood cells mbn2    87 ovary fGS/OSS  (108) ovary OSC    68 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    183 Schneider line 2 Sg4    118 embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167    159 embryonic S1    87 embryonic S3    56 leg disc CME L1    108 wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21    127 wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1    118 CNS ML-DmBG2-c2    101 tumorous blood cells mbn2    87 ovary fGS/OSS    108 ovary OSC    68 ovary OSS    55 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    183 Schneider line 2 Sg4    118 embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167    159 embryonic S1    87 embryonic S3    56 leg disc CME L1    108 wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21    127 wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1    118 CNS ML-DmBG2-c2    101 tumorous blood cells mbn2    87 ovary fGS/OSS    108 ovary OSC    68 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (183) Schneider line 2 Sg4  (118) embryonic 1182-4H  (82) embryonic GM2  (81) embryonic Kc167  (159) embryonic S1  (87) embryonic S3  (56) leg disc CME L1  (108) wing disc CME-W2  (92) wing disc ML-DmD8  (67) wing disc ML-DmD9  (71) wing disc ML-DmD16-c3  (77) wing disc ML-DmD21  (127) wing disc ML-DmD32  (87) haltere disc ML-DmD17-c3  (74) eye-antennal disc ML-DmD11  (48) antennal disc ML-DmD20-c5  (75) mixed discs ML-DmD4-c1  (91) CNS ML-DmBG1-c1  (118) CNS ML-DmBG2-c2  (101) tumorous blood cells mbn2  (87) ovary fGS/OSS  (108) ovary OSC  (68) ovary OSS  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (183) Schneider line 2 Sg4  118 embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167  (159) embryonic S1    87 embryonic S3    56 leg disc CME L1  108 wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21  127 wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1  118 CNS ML-DmBG2-c2  101 tumorous blood cells mbn2    87 ovary fGS/OSS  108 ovary OSC    68 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    183 Schneider line 2 Sg4    118 embryonic 1182-4H    82 embryonic GM2    81 embryonic Kc167    159 embryonic S1    87 embryonic S3    56 leg disc CME L1    108 wing disc CME-W2    92 wing disc ML-DmD8    67 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    77 wing disc ML-DmD21    127 wing disc ML-DmD32    87 haltere disc ML-DmD17-c3    74 eye-antennal disc ML-DmD11    48 antennal disc ML-DmD20-c5    75 mixed discs ML-DmD4-c1    91 CNS ML-DmBG1-c1    118 CNS ML-DmBG2-c2    101 tumorous blood cells mbn2    87 ovary fGS/OSS    108 ovary OSC    68 ovary OSS    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (46) cold shock, 4-day adult  (33) heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (49) Cadmium 50 mM 12 hrs, larvae L3  (53) Cadmium 50 mM 48 hrs, 4-day adult  (49) Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3  (78) Copper 15 mM 48 hrs, 4-day adult  (39) Zinc 5 mM 12 hrs, larvae L3  (40) Zinc 4.5 mM 48 hrs, 4-day adult  (45) Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3  (57) Ethanol 10% 3 hrs, larvae L3  (42) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (38) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult  (57) Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (49) Rotenone 2 μg 12 hrs, larvae L3  (43) Rotenone 8 μg 12 hrs, larvae L3  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (46) cold shock, 4-day adult  (33) heat shock, 4-day adult  (45) Cadmium 50 mM 6 hrs, larvae L3  (49) Cadmium 50 mM 12 hrs, larvae L3  (53) Cadmium 50 mM 48 hrs, 4-day adult  (49) Cadmium 100 mM 48 hrs, 4-day adult  (50) Copper 0.5 mM 12 hrs, larvae L3  (78) Copper 15 mM 48 hrs, 4-day adult  (39) Zinc 5 mM 12 hrs, larvae L3  (40) Zinc 4.5 mM 48 hrs, 4-day adult  (45) Ethanol 2.5% 3 hrs, larvae L3  (37) Ethanol 5% 3 hrs, larvae L3  (57) Ethanol 10% 3 hrs, larvae L3  (42) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (38) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (43) Caffeine 25 mg/ml 48 hrs, 4-day adult  (57) Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (49) Rotenone 2 μg 12 hrs, larvae L3  (43) Rotenone 8 μg 12 hrs, larvae L3  (38) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    46 cold shock, 4-day adult    33 heat shock, 4-day adult    45 Cadmium 50 mM 6 hrs, larvae L3    49 Cadmium 50 mM 12 hrs, larvae L3    53 Cadmium 50 mM 48 hrs, 4-day adult    49 Cadmium 100 mM 48 hrs, 4-day adult    50 Copper 0.5 mM 12 hrs, larvae L3    78 Copper 15 mM 48 hrs, 4-day adult    39 Zinc 5 mM 12 hrs, larvae L3    40 Zinc 4.5 mM 48 hrs, 4-day adult    45 Ethanol 2.5% 3 hrs, larvae L3    37 Ethanol 5% 3 hrs, larvae L3    57 Ethanol 10% 3 hrs, larvae L3    42 Caffeine 1.5 mg/ml 4 hrs, larvae L3    38 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    43 Caffeine 25 mg/ml 48 hrs, 4-day adult    57 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    49 Rotenone 2 μg 12 hrs, larvae L3    43 Rotenone 8 μg 12 hrs, larvae L3    38 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_23 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039402 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14542-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal vps2CB02373 vps2GD8363 lethal, with Scer\GAL4pnr-MD237 vps2GD8363 Phenotype manifest in Allele egg chamber | somatic clone vps2PP6 embryonic/larval brain | larval stage vps2GD8363 eye | somatic clone vps2PP6 plasma membrane | somatic clone vps2PP6
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of vps2 Class Mutagen Stocks Known lesion vps2GS11024 1 -- vps2PP6 ethyl methanesulfonate 1 Yes vps2CB02373 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of vps2 Class Mutagen Stocks Known lesion vps2GD8363 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes vps2HMS01911 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6204 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{TRiP.HMS01911} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{PTT-GB}vps2CB02373 NA insertion of mobile activating element P{GSV6}vps2GS11024 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
protein transport inferred from electronic annotation with InterPro:IPR005024 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
vps2 - ALiX anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Arp2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Arpc3A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - CG10103 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) vps2 - CG13321 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - CG15098 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - CG6259 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) vps2 - CG6724 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - CHMP2B experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) vps2 - Chmp1 experimental knowledge based (Guruharsha et al., 2011) vps2 - Dlc90F anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Flo-1 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) vps2 - Flo-2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Gp210 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - LRP1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - LanB1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Mcr anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Nmnat anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Nurf-38 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - RPA2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - Vps4 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) vps2 - abs anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - bocksbeutel anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - kst anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - mib2 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) vps2 - porin anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) vps2 - shrb anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) vps2 - vps24 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) vps2 - α-Spec anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions vps2 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68064 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039402 DroID - A comprehensive database of gene and protein interactions. • FBgn0039402 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43164
Orthologs
OrthoDB Orthologs (38) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Q5992 Dipteran inclusive ortholog search EOG60VW01 Insect inclusive ortholog search EOG6R4Z0B Arthropod inclusive ortholog search EOG6P2NJT Metazoa inclusive ortholog search EOG689HGM
Orthologs in Drosophila Species (EOG6Q5992)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\vps2     Drosophila simulans   Dsim\GD21266 Y   Drosophila sechellia   Dsec\GM10303 Y   Drosophila erecta   Dere\GG11461 Y   Drosophila yakuba   Dyak\GE23653 Y   Drosophila ananassae   Dana\GF16804 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA13067 Y   Drosophila persimilis   Dper\GL21825 Y   Drosophila willistoni   Dwil\GK14462 Y   Drosophila virilis   Dvir\GJ23912 Y   Drosophila mojavensis   Dmoj\GI24696 Y   Drosophila grimshawi   Dgri\GH19462 Y
Orthologs in non-Drosophila Dipterans (EOG60VW01)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001336   Anopheles gambiae Malaria mosquito  Agam\AGAP001285   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ015424
Orthologs in non-Dipteran Insects (EOG6R4Z0B)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC552786   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012155   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20967   Atta cephalotes Leafcutter ant  Acep\ACEP25772   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18287   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL17160   Linepithema humile Argentine ant  Lhum\LH19171   Pogonomyrmex barbatus Red harvester ant  Pbar\PB11366   Solenopsis invicta Red fire ant  Sinv\SINV16590   Acyrthosiphon pisum Pea aphid  Apim\ACYPI008820   Bombyx mori Silkmoth  Bmor\BGIBMGA009468   Pediculus humanus Human body louse  Phum\PHUM061230   Tribolium castaneum Red flour beetle  Tcas\GLEAN_07124
Orthologs in non-Insect Arthropods (EOG6P2NJT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_215551   Ixodes scapularis Deer tick  Isca\ISCW018144
Orthologs in non-Arthropod Metazoa (EOG689HGM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\vps-2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028016gn   Danio rerio Zebrafish  Drer\bc2   Xenopus tropicalis Western clawed frog  Xtro\chmp2a   Gallus gallus Domestic chicken  Ggal\ENSGALG00000018509   Mus musculus House mouse  Mmus\Chmp2a   Rattus norvegicus Norway rat  Rnor\Chmp2a   Homo sapiens Human  Hsap\CHMP2A
Human Orthologs (1)
Gene OMIM HGNC Hsap\CHMP2A
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD21266 Drosophila sechellia Dsec\GM10303 Drosophila erecta Dere\GG11461 Drosophila yakuba Dyak\GE23653 Drosophila ananassae Dana\GF16804 Drosophila pseudoobscura pseudoobscura Dpse\GA13067 Drosophila persimilis Dper\GL21825 Drosophila willistoni Dwil\GK14462 Drosophila virilis Dvir\GJ23912 Drosophila mojavensis Dmoj\GI24696 Drosophila grimshawi Dgri\GH19462
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	38995 y1 sc* v1; P{TRiP.HMS01911}attP40 39630 w*; vps2PP6 P{neoFRT}82B/TM6B, Tb1
Kyoto	203012 y1 w67c23; P{GSV6}vps2GS11024/TM3, Sb1 Ser1
VDRC	v24869 w1118; P{GD8363}v24869/TM3
Genomic Clones ( 1 )
	BACR13F13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 40 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GH16325 RH72336
Other clones	DPiM_RH72336
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT13090 AT16678 LP19524 RE45180 RE48282 RE59786 RE63991 RE74611 RH12808 RH13107 RH15969 RH24166 RH26414 RH34323 RH38930 RH44892 RH52358 RH54495 RH55225 RH56062 RH66601 UT01916
Other clones	534034 571116 bs02f06 Dmel_dig_000373_0686_0340 Dmel_neb_014711_0420_1363 Dmel_neb_014817_0329_0893 EC15019 EN10061 ESG019a.E21_D03 RM01974 RM02174 RM02274 RM02374 RM02474 RM02574
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039402 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43164
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: vps2 CG14542 (Ahmad et al., 2009)
Source for database merge of	Source for merge of: CG14542 NEST:bs02f06 (FlyBase, 1996-)
Additional comments	Source for merge of CG14542 NEST:bs02f06 was sequence comparison (date:030903). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143198 RefSeq (Proteins) • NP_651455 DDBJ / EMBL / GenBank • AAF56559 AAM11068 AI293204 AI944612 AW940619 AY094715 BI606133 Entrez Gene - A searchable database of RefSeq genes. • 43164 UniProtKB/TrEMBL • Q8SXB1 Q9VBI3
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Snf7 (IPR005024)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68064 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039402 DroID - A comprehensive database of gene and protein interactions. • FBgn0039402 DRSC - Results from RNAi screens. • FBgn0039402 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039402 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG14542-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039402 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43164 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43164 modMine - Data generated by the modENCODE project. • FBgn0039402
Synonyms & Secondary IDs ( 6 )
Reported As
Symbol Synonym	CG14542 (Ahmad et al., 2009, Bhutkar et al., 2008, Buszczak et al., 2007, Philips et al., 2008, Li et al., 2009, Vaccari et al., 2009, Ni et al., 2010.12.1) Did4 (Vaccari et al., 2009) dvps2 (Ahmad et al., 2009) NEST:bs02f06   Vps2 (Vaccari et al., 2009) vps2 (Vaccari et al., 2009, Ahmad et al., 2009)
Name Synonym	vps2 (Ahmad et al., 2009, )
Secondary FlyBase IDs
	FBgn0045428
References ( 24 )
Generate a list of	All references relating to this gene ( 24 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 6 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 2 )
Recent research papers ( 3 )
	Bras et al., 2012, J. Cell Sci. 125(20): 4886--4901 Genetic identification of intracellular trafficking regulators involved in Notch-dependent binary cell fate acquisition following asymmetric cell division. [FBrf0220239] Krauchunas et al., 2012, Dev. Biol. 370(1): 125--134 Protein phosphorylation changes reveal new candidates in the regulation of egg activation and early embryogenesis in D. melanogaster. [FBrf0219342] Hori et al., 2011, J. Cell Biol. 195(6): 1005--1015 Synergy between the ESCRT-III complex and Deltex defines a ligand-independent Notch signal. [FBrf0216916] Show all research papers ...