General Information Symbol Dmel\ TwdlDSpecies D. melanogaster Name TweedleD Annotation symbol CG14243 Feature type protein_coding_gene FlyBase ID FBgn0039444 Gene Model Status Current Stock availability 2 publicly
available Genomic Location Chromosome (arm) 3R Recombination map Cytogenetic map 97C3-97C3 Sequence location 3R:22,465,747..22,466,776 [+]
Genomic Maps
Summary Information Automatically generated summary
See sections below for more information The gene
TweedleD is referred to in FlyBase by the symbol
Dmel\TwdlD (CG14243, FBgn0039444). It is a protein_coding_gene from
Drosophila melanogaster . There is experimental evidence that it has the
molecular function : structural constituent of chitin-based larval cuticle. There is experimental evidence that it is involved in the
biological process : body morphogenesis; chitin-based cuticle development.
8 alleles are reported . No phenotypic data is available. It has
one annotated transcript and
one annotated polypeptide .
Protein features are: Domain of unknown function DUF243. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely high expression to a trough of extremely low expression. Peak expression observed within 12-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1636097_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of TwdlD. Gene sequence location is
3R:22465747..22466776 .
User Contributed Data
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It currently only tracks new links between this FlyBase report and other
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FB2013_03
FB2013_02
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Detailed Mapping Data
FlyBase Computed Cytological Location
Experimentally Determined Cytological Location
Experimentally Determined Recombination Data
Location Left of (cM) Right of (cM) Notes Gene Model & Products Comments on Gene
Model Gene model reviewed during 5.47
Transcript Data Annotated Transcripts Additional Transcript Data
& Comments Reported size (kB) Comments External Data Crossreferences
Polypeptide Data Annotated
Polypeptides Additional Polypeptide
Data & Comments Reported size (kDa) Comments External Data Linkouts Crossreferences
domains - A database of protein families, domains, and functional sites
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank UniProtKB/Swiss-Prot UniProtKB/TrEMBL Mapped Features Mapped Features have been reorganized, please
see this article for details. Additional mapped features and mutations can
be found on GBrowse or related reports. External Data Linkouts Crossreferences Expression Data Transcript Expression
Additional Descriptive Data
Marker for Subcellular Localization CV Term Polypeptide Expression
Additional Descriptive Data
Marker for Subcellular Localization (GO Cellular Component) inferred from direct assay
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference
FlyAtlas Anatomy Microarray
Linear, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Linear, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Moderate
High
Linear, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Moderate
High
Very high
Linear, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
Very high
log, scaled to maximum expression level
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
log, scaled to Moderate expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Moderate
High
log, scaled to High level expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Moderate
High
Very high
log, scaled to Very high expression
Tissue
Expression Level
Larval Central Nervous System
1.3
Larval Midgut
5.7
Larval Hindgut
1.6
Larval Malpighian Tubules
5.6
Larval Fat Body
6.9
Larval Salivary Gland
7.8
Larval Trachea
5.125
Larval Carcass
7.925
Adult Head
3.2
Adult Eye
5.95
Adult Brain
1.3
Adult Thoracic-Abdominal Ganglion
2.4
Adult Crop
10
Adult Midgut
6.7
Adult Hindgut
2.4
Adult Malpighian Tubules
2.1
Adult Fat Body
1.8
Adult Salivary Gland
8.1
Adult Heart
4.325
Adult VirginFemale Spermatheca
6.1
Adult InseminatedFemale Spermatheca
5.1
Adult Ovary
1.5
Adult Testis
2.5
Adult Male Accessory Gland
9.2
Adult Carcass
7.5
Expression Level Scale
None
Low
Moderate
High
Very high
Heatmap
Tissue
Expression Level
Larval Central Nervous System
Larval Midgut
Larval Hindgut
Larval Malpighian Tubules
Larval Fat Body
Larval Salivary Gland
Larval Trachea
Larval Carcass
Adult Head
Adult Eye
Adult Brain
Adult Thoracic-Abdominal Ganglion
Adult Crop
Adult Midgut
Adult Hindgut
Adult Malpighian Tubules
Adult Fat Body
Adult Salivary Gland
Adult Heart
Adult VirginFemale Spermatheca
Adult InseminatedFemale Spermatheca
Adult Ovary
Adult Testis
Adult Male Accessory Gland
Adult Carcass
FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level
Tissue
Adult Expression Level
NA
Head
3.2
NA
Eye
5.95
NA
Brain
1.3
1.3
Central Nervous System
NA
NA
Thoracic-Abdominal Ganglion
2.4
NA
Crop
no informative data
5.7
Midgut
6.7
1.6
Hindgut
2.4
5.6
Malpighian Tubules
2.1
6.9
Fat Body
1.8
7.8
Salivary Gland
8.1
NA
Heart
4.325
5.125
Trachea
NA
NA
VirginFemale Spermatheca
6.1
NA
InseminatedFemale Spermatheca
5.1
NA
Ovary
1.5
NA
Testis
2.5
NA
Male Accessory Gland
9.2
7.925
Carcass
7.5
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
Linear, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
266
embryo 16-18hr
2710
embryo 18-20hr
2127
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
243
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Linear, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
(266)
embryo 16-18hr
(2710)
embryo 18-20hr
(2127)
embryo 20-22hr
(37)
embryo 22-24hr
(53)
larva L1
5
larva L2
(243)
larva L3 12hr old
(52)
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
(266)
embryo 16-18hr
(2710)
embryo 18-20hr
(2127)
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
(243)
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
266
embryo 16-18hr
2710
embryo 18-20hr
2127
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
243
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
266
embryo 16-18hr
2710
embryo 18-20hr
2127
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
243
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
log, scaled to Moderate expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
(266)
embryo 16-18hr
(2710)
embryo 18-20hr
(2127)
embryo 20-22hr
(37)
embryo 22-24hr
(53)
larva L1
5
larva L2
(243)
larva L3 12hr old
(52)
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
(266)
embryo 16-18hr
(2710)
embryo 18-20hr
(2127)
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
(243)
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Developmental Stage
Expression Level
embryo 00-02hr
6
embryo 02-04hr
3
embryo 04-06hr
2
embryo 06-08hr
2
embryo 08-10hr
10
embryo 10-12hr
14
embryo 12-14hr
11
embryo 14-16hr
266
embryo 16-18hr
2710
embryo 18-20hr
2127
embryo 20-22hr
37
embryo 22-24hr
53
larva L1
5
larva L2
243
larva L3 12hr old
52
larva L3 puffstage 1-2
1
larva L3 puffstage 3-6
2
larva L3 puffstage 7-9
3
white prepupae new
2
white prepupae 12hr
4
white prepupae 24hr
6
pupae 2d postWPP
15
pupae 3d postWPP
9
pupae 4d postWPP
13
adult male 01day
13
adult male 05day
17
adult male 30day
20
adult female 01day
0
adult female 05day
0
adult female 30day
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Developmental Stage
Expression Level
embryo 00-02hr
embryo 02-04hr
embryo 04-06hr
embryo 06-08hr
embryo 08-10hr
embryo 10-12hr
embryo 12-14hr
embryo 14-16hr
embryo 16-18hr
embryo 18-20hr
embryo 20-22hr
embryo 22-24hr
larva L1
larva L2
larva L3 12hr old
larva L3 puffstage 1-2
larva L3 puffstage 3-6
larva L3 puffstage 7-9
white prepupae new
white prepupae 12hr
white prepupae 24hr
pupae 2d postWPP
pupae 3d postWPP
pupae 4d postWPP
adult male 01day
adult male 05day
adult male 30day
adult female 01day
adult female 05day
adult female 30day
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Linear, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Linear, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
Linear, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Linear, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Extremely high
log, scaled to maximum expression level
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
log, scaled to Moderate expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
log, scaled to High expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
log, scaled to Extremely high expression
Treatment
Expression Level
extended cold, 4-day adult
1
cold shock, 4-day adult
1
heat shock, 4-day adult
0
Cadmium 50 mM 6 hrs, larvae L3
0
Cadmium 50 mM 12 hrs, larvae L3
0
Cadmium 50 mM 48 hrs, 4-day adult
3
Cadmium 100 mM 48 hrs, 4-day adult
11
Copper 0.5 mM 12 hrs, larvae L3
0
Copper 15 mM 48 hrs, 4-day adult
5
Zinc 5 mM 12 hrs, larvae L3
0
Zinc 4.5 mM 48 hrs, 4-day adult
5
Ethanol 2.5% 3 hrs, larvae L3
1
Ethanol 5% 3 hrs, larvae L3
0
Ethanol 10% 3 hrs, larvae L3
0
Caffeine 1.5 mg/ml 4 hrs, larvae L3
0
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
7
Caffeine 25 mg/ml 48 hrs, 4-day adult
1
Paraquat 5 mM 48 hrs, 4-day adult
17
Paraquat 10 mM 48 hrs, 4-day adult
17
Rotenone 2 μg 12 hrs, larvae L3
0
Rotenone 8 μg 12 hrs, larvae L3
0
Expression Level Scale
Very low
Low
Moderate
Moderately high
High
Very high
Extremely high
Heatmap
Treatment
Expression Level
extended cold, 4-day adult
cold shock, 4-day adult
heat shock, 4-day adult
Cadmium 50 mM 6 hrs, larvae L3
Cadmium 50 mM 12 hrs, larvae L3
Cadmium 50 mM 48 hrs, 4-day adult
Cadmium 100 mM 48 hrs, 4-day adult
Copper 0.5 mM 12 hrs, larvae L3
Copper 15 mM 48 hrs, 4-day adult
Zinc 5 mM 12 hrs, larvae L3
Zinc 4.5 mM 48 hrs, 4-day adult
Ethanol 2.5% 3 hrs, larvae L3
Ethanol 5% 3 hrs, larvae L3
Ethanol 10% 3 hrs, larvae L3
Caffeine 1.5 mg/ml 4 hrs, larvae L3
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
Caffeine 25 mg/ml 48 hrs, 4-day adult
Paraquat 5 mM 48 hrs, 4-day adult
Paraquat 10 mM 48 hrs, 4-day adult
Rotenone 2 μg 12 hrs, larvae L3
Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
External Data & Images
Linkouts
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
Alleles & Phenotypes Summary of Allele Phenotypes Classical Alleles ( 1 ) For All Classical Alleles Show Allele of
TwdlD Class Mutagen Stocks Known lesion TwdlD1 0 Yes
Alleles Carried on Transgenic Constructs
( 7 ) For All Alleles Carried on Transgenic
Constructs Show Aneuploid Aberrations Transgenic Constructs & Insertions
Transgenic Constructs characterization construct
Insertions Gene Ontology: Function, Process
& Cellular Component ( 4 unique terms ) Terms Based on
Experimental Evidence ( 4 terms ) Molecular Function inferred from direct assay
Biological Process inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component inferred from direct assay
Terms Based on Predictions or
Assertions ( 0 terms ) Sequence Ontology: Class of Gene Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions Interacts with Please look at the allele data
for full details of the genetic interactions
External Data Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
Orthologs
OrthoDB Orthologs (12)
- based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
OrthoDB orthology group searches
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
No orthologs identified
Insect inclusive ortholog search
No orthologs identified
Arthropod inclusive ortholog search
No orthologs identified
Metazoa inclusive ortholog search
No orthologs identified
Orthologs in Drosophila Species
(EOG6X0NCP )
Drosophila melanogaster
fruit fly
Drosophila pseudoobscura pseudoobscura
Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)AAA Orthologs (11)
based on analysis using Dmel annotation version 4.3
Drosophila pseudoobscura pseudoobscura
Stocks & Reagents Stocks Listed in FlyBase ( 2 )VDRC Genomic Clones ( 2 )Please Note FlyBase no
longer curates genomic clone accessions so this list
may not be complete
cDNA Clones ( 77 )Please Note This section lists
cDNAs and ESTs that fall within the genomic extent
of the gene model, which may include cDNAs and ESTs
of genes within introns, or of overlapping genes.
Please see
GBrowse for alignment of the cDNAs and ESTs
to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones Other clones cDNA Clones, End Sequenced
(ESTs) BDGP DGC clones Other clones RNAi & Array Information Linkouts
- Results from RNAi screens.
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Antibody Information
Other Information Discoverer Etymology Identification Relationship to Other Genes Source for database identity of Source for identity of: TwdlD CG14243
Source for database merge of Additional comments Other Comments TwdlD affects body shape throughout the end of embryogenesis and through the pupal stage.
External Crossreferences & Linkouts
Sequence Crossreferences
- A searchable database of RefSeq genes.
Other Crossreferences
domains - A database of protein families, domains, and functional sites
- Patterns of gene expression in Drosophila embryogenesis
Linkouts
- A database of protein and genetic interactions
- A comprehensive database of gene and protein interactions.
- Results from RNAi screens.
- Cell culture data for RNAi and other high-throughput technologies
- Adult expression by tissue, using Affymetrix Dros2 array
- Integrated genomics database for Drosophila, Anopheles, and C.elegans
- GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Protein-protein interactions (PPI) from both known and predicted PPI data sets.
- Data generated by the modENCODE project.
Synonyms & Secondary IDs
( 3 )Reported As Symbol Synonym Name Synonym Secondary FlyBase
IDs References ( 16 )Research paper Pina and Pignoni, 2012, genesis 50(2): 119--123Tubby-RFP Balancers for Developmental Analysis: FM7c 2xTb-RFP, CyO 2xTb-RFP, and TM3 2xTb-RFP. [FBrf0217414] Cornman, 2010, PLoS ONE 5(9): e12536The Distribution of GYR- and YLP-Like Motifs in Drosophila Suggests a General Role in Cuticle Assembly and Other Protein-Protein Interactions. [FBrf0211774] Kallappagoudar et al., 2010, Mol. Cell. Proteomics 9(9): 2005--2018Nuclear Matrix Proteome Analysis of Drosophila melanogaster. [FBrf0211714] Tomancak et al., 2007, Genome Biol. 8(7): R145Global analysis of patterns of gene expression during Drosophila embryogenesis. [FBrf0205271] Guan et al., 2006, Proc. Natl. Acad. Sci. U.S.A. 103(45): 16794--16799Mutation of TweedleD, a member of an unconventional cuticle protein family, alters body shape in Drosophila. [FBrf0195309] Supplementary material Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Guan, 2006, Proc. Natl. Acad. Sci. U.S.A. 103(45): [FBrf0200374] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452] Personal communication to FlyBase Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi CenterRNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi CenterRNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file)Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078] FlyBase analysis FlyBase Curators, 2010-, Gene Ontology (GO) annotation review.Gene Ontology (GO) annotation review. [FBrf0216433] Stock list Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY.RNAi stocks available from NIG-FLY. [FBrf0218457] Website Fisher et al., 2012, BDGP insitu homepageBDGP insitu homepage [FBrf0219073]