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Gene Dmel\CG7920

General Information
Symbol	Dmel\CG7920	Species	D. melanogaster
Name		Annotation symbol	CG7920
Feature type	protein_coding_gene	FlyBase ID	FBgn0039737
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	99D1-99D1	Sequence location	3R:25,836,198..25,841,006 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG7920 (FBgn0039737). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: 4-hydroxybutyrate CoA-transferase activity. There is experimental evidence that it is involved in the biological process: neurogenesis. 12 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: 4-hydroxybutyrate coenzyme A transferase; Acetyl-CoA hydrolase/transferase; Acetyl-CoA hydrolase/transferase C-terminal domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval Malpighian tubules. Gene sequence location is 3R:25836198..25841006.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 99D1-99D1   Limits computationally determined from genome sequence between P{PZ}ncd05884 and P{lacW}l(3)s2500s2500
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG7920 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG7920-RA FBtr0085603  NM_143505   1910   477 CG7920-RC FBtr0334706  NM_001276166   1791   477
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG7920-PA   FBpp0084968   51.9   477   8.24     NP_651762   AAF56990 CG7920-PC   FBpp0306760   51.9   477   8.24     NP_001263095   AGB96474
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Acetyl-CoA hydrolase/transferase (IPR003702) Acetyl-CoA hydrolase/transferase C-terminal domain (IPR026888) 4-hydroxybutyrate coenzyme A transferase (IPR026887)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA263239   AA697483   AA698906   AA699113   AA736092   AA736174   AA803816   AA803883   AA950420   AE014297 AAF56990   AE014297 AGB96474   AI062045   AI062115   AI062993   AI064385   AI107682   AI107828   AI107933   AI108924   AI109066   AI110192   AI113411   AI113900   AI114122   AI135339   AI135524   AI238301   AI238817   AI238876   AI256910   AI257450   AI258654   AI258955   AI292612   AI292703   AI292819   AI293146   AI293262   AI295545   AI296283   AI387623   AI388625   AI388717   AI389043   AI389141   AI389696   AI389712   AI402503   AI402876   AI403130   AI403648   AI403882   AI403904   AI404345   AI404865   AI405018   AI405469   AI405576   AI405658   AI456756   AI513724   AI513845   AI514061   AI514106   AI517377   AI517543   AI517630   AI531933   AI532546   AI533001   AI533546   AI534360   AI534537   AI534891   AI542645   AI945058   AI945333   AW941387   AX201652   AX201653   AY069288 AAL39433   BE975374   BE977601   BF485619   BF486006   BF486677   BF487752   BF488268   BF489194   BF490445   BF491986   BF493284   BF494433   BF494874   BF495336   BF497820   BF498269   BF498460   BF499109   BF500065   BF504421   BF505205   BF505315   BF505542   BF506199   BF506329   BF506736   BG633446   BG634083   BG636850   BG637375   BG638812   BG640267   BI172286   BI235799   BI236549   BI237968   BI353440   BI366206   BI485261   BI486812   BI565049   BI568320   BI570165   BI571481   BI577620   BI581174   BI581523   BI581599   BI581625   BI581757   BI581807   BI582538   BI582589   BI582591   BI583856   BI584931   BI585723   BI586176   BI590797   BI591970   BI592908   BI593227   BI606323   BI607605   BI608763   BI610990   BI611564   BI611854   BI614974   BI615620   BI618228   BI619042   BI619861   BI621822   BI622764   BI622850   BI624269   BI624377   BI625415   BI625782   BI628893   BI630009   BI633069   BI636226   BI637037   BI639827   BZ748771   CK132197   CK657471   CK657781   CK658875   CK659272   CK661089   CK662337   CO156075   CO178382   CO187589   CO266582   CO282414   CO297925   CO301973   CO302248   CO326972   CO329948   CO338506   CO338549   CZ474595   CZ487485   EC062424   EC066949   EC071368   EC080564   EC081156   EC086910   EC205646   EC210937   EC215773   EC226850   EC234488   EC244925   EC246215   EC250754   EC261671   EC265339   EV574870   EV576114   EV580370   EV581361   EV582444   EV584749   EV596158   EV599330   EV599622   EV600259
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VAC1 Q8IMJ8
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 9 -- 10   organism | faint & ubiquitous   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) foregut primordium   (Fisher et al., 2012) labial sensory complex primordium   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) embryonic stage 13 -- 16   amnioserosa   (Fisher et al., 2012) dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic foregut   (Fisher et al., 2012) embryonic hindgut   (Fisher et al., 2012) embryonic large intestine   (Fisher et al., 2012) embryonic Malpighian tubule   (Fisher et al., 2012) embryonic/larval fat body   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) embryonic/larval oenocyte   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006, Wasbrough et al., 2010) day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
lipid particle inferred from direct assay (Beller et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Two or more Affy2 ProbeSets identify exons of this gene. This is a summary of the tissue expression peaks exhibited in at least one of these ProbeSets. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval Malpighian tubules. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    127 central nervous system, larvae L3    87 central nervous system, pupae P8    107 head, virgin 1-day female    423 head, virgin 4-day female    360 head, virgin 20-day female    394 head, mated 1-day female    355 head, mated 4-day female    339 head, mated 20-day female    409 head, mated 1-day male    437 head, mated 4-day male    424 head, mated 20-day male    544 salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult    228 digestive system, 4-day adult    201 digestive system, 20-day adult    190 fat body, larvae L3 wandering    386 fat body, white prepupae    60 fat body, pupae P8    182 carcass, larvae L3 wandering    74 carcass, 1-day adult    629 carcass, 4-day adult    553 carcass, 20-day adult    563 ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male    254 accessory gland, mated 4-day male    99 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (127) central nervous system, larvae L3  (87) central nervous system, pupae P8  (107) head, virgin 1-day female  (423) head, virgin 4-day female  (360) head, virgin 20-day female  (394) head, mated 1-day female  (355) head, mated 4-day female  (339) head, mated 20-day female  (409) head, mated 1-day male  (437) head, mated 4-day male  (424) head, mated 20-day male  (544) salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering  (50) digestive system, 1-day adult  (228) digestive system, 4-day adult  (201) digestive system, 20-day adult  (190) fat body, larvae L3 wandering  (386) fat body, white prepupae  (60) fat body, pupae P8  (182) carcass, larvae L3 wandering  (74) carcass, 1-day adult  (629) carcass, 4-day adult  (553) carcass, 20-day adult  (563) ovary, virgin 4-day female  (95) ovary, mated 4-day female  (93) testis, mated 4-day male  (254) accessory gland, mated 4-day male  (99) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (127) central nervous system, larvae L3    87 central nervous system, pupae P8  107 head, virgin 1-day female  (423) head, virgin 4-day female  (360) head, virgin 20-day female  (394) head, mated 1-day female  (355) head, mated 4-day female  (339) head, mated 20-day female  (409) head, mated 1-day male  (437) head, mated 4-day male  (424) head, mated 20-day male  (544) salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult  (228) digestive system, 4-day adult  (201) digestive system, 20-day adult  (190) fat body, larvae L3 wandering  (386) fat body, white prepupae    60 fat body, pupae P8  (182) carcass, larvae L3 wandering    74 carcass, 1-day adult  (629) carcass, 4-day adult  (553) carcass, 20-day adult  (563) ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male  (254) accessory gland, mated 4-day male    99 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    127 central nervous system, larvae L3    87 central nervous system, pupae P8    107 head, virgin 1-day female    423 head, virgin 4-day female    360 head, virgin 20-day female    394 head, mated 1-day female    355 head, mated 4-day female    339 head, mated 20-day female    409 head, mated 1-day male    437 head, mated 4-day male    424 head, mated 20-day male    544 salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult    228 digestive system, 4-day adult    201 digestive system, 20-day adult    190 fat body, larvae L3 wandering    386 fat body, white prepupae    60 fat body, pupae P8    182 carcass, larvae L3 wandering    74 carcass, 1-day adult    629 carcass, 4-day adult    553 carcass, 20-day adult    563 ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male    254 accessory gland, mated 4-day male    99 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    127 central nervous system, larvae L3    87 central nervous system, pupae P8    107 head, virgin 1-day female    423 head, virgin 4-day female    360 head, virgin 20-day female    394 head, mated 1-day female    355 head, mated 4-day female    339 head, mated 20-day female    409 head, mated 1-day male    437 head, mated 4-day male    424 head, mated 20-day male    544 salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult    228 digestive system, 4-day adult    201 digestive system, 20-day adult    190 fat body, larvae L3 wandering    386 fat body, white prepupae    60 fat body, pupae P8    182 carcass, larvae L3 wandering    74 carcass, 1-day adult    629 carcass, 4-day adult    553 carcass, 20-day adult    563 ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male    254 accessory gland, mated 4-day male    99 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (127) central nervous system, larvae L3  (87) central nervous system, pupae P8  (107) head, virgin 1-day female  (423) head, virgin 4-day female  (360) head, virgin 20-day female  (394) head, mated 1-day female  (355) head, mated 4-day female  (339) head, mated 20-day female  (409) head, mated 1-day male  (437) head, mated 4-day male  (424) head, mated 20-day male  (544) salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering  (50) digestive system, 1-day adult  (228) digestive system, 4-day adult  (201) digestive system, 20-day adult  (190) fat body, larvae L3 wandering  (386) fat body, white prepupae  (60) fat body, pupae P8  (182) carcass, larvae L3 wandering  (74) carcass, 1-day adult  (629) carcass, 4-day adult  (553) carcass, 20-day adult  (563) ovary, virgin 4-day female  (95) ovary, mated 4-day female  (93) testis, mated 4-day male  (254) accessory gland, mated 4-day male  (99) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering  127 central nervous system, larvae L3    87 central nervous system, pupae P8  107 head, virgin 1-day female  (423) head, virgin 4-day female  (360) head, virgin 20-day female  (394) head, mated 1-day female  (355) head, mated 4-day female  (339) head, mated 20-day female  (409) head, mated 1-day male  (437) head, mated 4-day male  (424) head, mated 20-day male  (544) salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult  (228) digestive system, 4-day adult  (201) digestive system, 20-day adult  (190) fat body, larvae L3 wandering  (386) fat body, white prepupae    60 fat body, pupae P8  (182) carcass, larvae L3 wandering    74 carcass, 1-day adult  (629) carcass, 4-day adult  (553) carcass, 20-day adult  (563) ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male  (254) accessory gland, mated 4-day male    99 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    127 central nervous system, larvae L3    87 central nervous system, pupae P8    107 head, virgin 1-day female    423 head, virgin 4-day female    360 head, virgin 20-day female    394 head, mated 1-day female    355 head, mated 4-day female    339 head, mated 20-day female    409 head, mated 1-day male    437 head, mated 4-day male    424 head, mated 20-day male    544 salivary gland, larvae L3 wandering    11 salivary gland, white prepupae    21 digestive system, larvae L3 wandering    50 digestive system, 1-day adult    228 digestive system, 4-day adult    201 digestive system, 20-day adult    190 fat body, larvae L3 wandering    386 fat body, white prepupae    60 fat body, pupae P8    182 carcass, larvae L3 wandering    74 carcass, 1-day adult    629 carcass, 4-day adult    553 carcass, 20-day adult    563 ovary, virgin 4-day female    95 ovary, mated 4-day female    93 testis, mated 4-day male    254 accessory gland, mated 4-day male    99 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 12-24 hour embryonic stages, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr    182 embryo 16-18hr    243 embryo 18-20hr    299 embryo 20-22hr    333 embryo 22-24hr    319 larva L1    561 larva L2    426 larva L3 12hr old    573 larva L3 puffstage 1-2    344 larva L3 puffstage 3-6    157 larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr    223 white prepupae 24hr    193 pupae 2d postWPP    243 pupae 3d postWPP    439 pupae 4d postWPP    530 adult male 01day    640 adult male 05day    687 adult male 30day    712 adult female 01day    534 adult female 05day    263 adult female 30day    256 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (103) embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr  (31) embryo 10-12hr  (62) embryo 12-14hr  (63) embryo 14-16hr  (182) embryo 16-18hr  (243) embryo 18-20hr  (299) embryo 20-22hr  (333) embryo 22-24hr  (319) larva L1  (561) larva L2  (426) larva L3 12hr old  (573) larva L3 puffstage 1-2  (344) larva L3 puffstage 3-6  (157) larva L3 puffstage 7-9  (88) white prepupae new  (95) white prepupae 12hr  (223) white prepupae 24hr  (193) pupae 2d postWPP  (243) pupae 3d postWPP  (439) pupae 4d postWPP  (530) adult male 01day  (640) adult male 05day  (687) adult male 30day  (712) adult female 01day  (534) adult female 05day  (263) adult female 30day  (256) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr  (182) embryo 16-18hr  (243) embryo 18-20hr  (299) embryo 20-22hr  (333) embryo 22-24hr  (319) larva L1  (561) larva L2  (426) larva L3 12hr old  (573) larva L3 puffstage 1-2  (344) larva L3 puffstage 3-6  (157) larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr  (223) white prepupae 24hr  (193) pupae 2d postWPP  (243) pupae 3d postWPP  (439) pupae 4d postWPP  (530) adult male 01day  (640) adult male 05day  (687) adult male 30day  (712) adult female 01day  (534) adult female 05day  (263) adult female 30day  (256) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr    182 embryo 16-18hr    243 embryo 18-20hr    299 embryo 20-22hr    333 embryo 22-24hr    319 larva L1    561 larva L2    426 larva L3 12hr old    573 larva L3 puffstage 1-2    344 larva L3 puffstage 3-6    157 larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr    223 white prepupae 24hr    193 pupae 2d postWPP    243 pupae 3d postWPP    439 pupae 4d postWPP    530 adult male 01day    640 adult male 05day    687 adult male 30day    712 adult female 01day    534 adult female 05day    263 adult female 30day    256 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr    182 embryo 16-18hr    243 embryo 18-20hr    299 embryo 20-22hr    333 embryo 22-24hr    319 larva L1    561 larva L2    426 larva L3 12hr old    573 larva L3 puffstage 1-2    344 larva L3 puffstage 3-6    157 larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr    223 white prepupae 24hr    193 pupae 2d postWPP    243 pupae 3d postWPP    439 pupae 4d postWPP    530 adult male 01day    640 adult male 05day    687 adult male 30day    712 adult female 01day    534 adult female 05day    263 adult female 30day    256 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (103) embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr  31 embryo 10-12hr  (62) embryo 12-14hr  (63) embryo 14-16hr  (182) embryo 16-18hr  (243) embryo 18-20hr  (299) embryo 20-22hr  (333) embryo 22-24hr  (319) larva L1  (561) larva L2  (426) larva L3 12hr old  (573) larva L3 puffstage 1-2  (344) larva L3 puffstage 3-6  (157) larva L3 puffstage 7-9  (88) white prepupae new  (95) white prepupae 12hr  (223) white prepupae 24hr  (193) pupae 2d postWPP  (243) pupae 3d postWPP  (439) pupae 4d postWPP  (530) adult male 01day  (640) adult male 05day  (687) adult male 30day  (712) adult female 01day  (534) adult female 05day  (263) adult female 30day  (256) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr  103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr  (182) embryo 16-18hr  (243) embryo 18-20hr  (299) embryo 20-22hr  (333) embryo 22-24hr  (319) larva L1  (561) larva L2  (426) larva L3 12hr old  (573) larva L3 puffstage 1-2  (344) larva L3 puffstage 3-6  (157) larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr  (223) white prepupae 24hr  (193) pupae 2d postWPP  (243) pupae 3d postWPP  (439) pupae 4d postWPP  (530) adult male 01day  (640) adult male 05day  (687) adult male 30day  (712) adult female 01day  (534) adult female 05day  (263) adult female 30day  (256) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    103 embryo 02-04hr    9 embryo 04-06hr    8 embryo 06-08hr    20 embryo 08-10hr    31 embryo 10-12hr    62 embryo 12-14hr    63 embryo 14-16hr    182 embryo 16-18hr    243 embryo 18-20hr    299 embryo 20-22hr    333 embryo 22-24hr    319 larva L1    561 larva L2    426 larva L3 12hr old    573 larva L3 puffstage 1-2    344 larva L3 puffstage 3-6    157 larva L3 puffstage 7-9    88 white prepupae new    95 white prepupae 12hr    223 white prepupae 24hr    193 pupae 2d postWPP    243 pupae 3d postWPP    439 pupae 4d postWPP    530 adult male 01day    640 adult male 05day    687 adult male 30day    712 adult female 01day    534 adult female 05day    263 adult female 30day    256 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    111 Schneider line 2 Sg4    138 embryonic 1182-4H    119 embryonic GM2    69 embryonic Kc167    71 embryonic S1    159 embryonic S3    116 leg disc CME L1    194 wing disc CME-W2    73 wing disc ML-DmD8    116 wing disc ML-DmD9    297 wing disc ML-DmD16-c3    118 wing disc ML-DmD21    152 wing disc ML-DmD32    158 haltere disc ML-DmD17-c3    105 eye-antennal disc ML-DmD11    191 antennal disc ML-DmD20-c5    117 mixed discs ML-DmD4-c1    252 CNS ML-DmBG1-c1    183 CNS ML-DmBG2-c2    45 tumorous blood cells mbn2    142 ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (111) Schneider line 2 Sg4  (138) embryonic 1182-4H  (119) embryonic GM2  (69) embryonic Kc167  (71) embryonic S1  (159) embryonic S3  (116) leg disc CME L1  (194) wing disc CME-W2  (73) wing disc ML-DmD8  (116) wing disc ML-DmD9  (297) wing disc ML-DmD16-c3  (118) wing disc ML-DmD21  (152) wing disc ML-DmD32  (158) haltere disc ML-DmD17-c3  (105) eye-antennal disc ML-DmD11  (191) antennal disc ML-DmD20-c5  (117) mixed discs ML-DmD4-c1  (252) CNS ML-DmBG1-c1  (183) CNS ML-DmBG2-c2  (45) tumorous blood cells mbn2  (142) ovary fGS/OSS  (57) ovary OSC  (39) ovary OSS  (27) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  (111) Schneider line 2 Sg4  (138) embryonic 1182-4H  (119) embryonic GM2    69 embryonic Kc167    71 embryonic S1  (159) embryonic S3  (116) leg disc CME L1  (194) wing disc CME-W2    73 wing disc ML-DmD8  (116) wing disc ML-DmD9  (297) wing disc ML-DmD16-c3  (118) wing disc ML-DmD21  (152) wing disc ML-DmD32  (158) haltere disc ML-DmD17-c3  105 eye-antennal disc ML-DmD11  (191) antennal disc ML-DmD20-c5  (117) mixed discs ML-DmD4-c1  (252) CNS ML-DmBG1-c1  (183) CNS ML-DmBG2-c2    45 tumorous blood cells mbn2  (142) ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    111 Schneider line 2 Sg4    138 embryonic 1182-4H    119 embryonic GM2    69 embryonic Kc167    71 embryonic S1    159 embryonic S3    116 leg disc CME L1    194 wing disc CME-W2    73 wing disc ML-DmD8    116 wing disc ML-DmD9    297 wing disc ML-DmD16-c3    118 wing disc ML-DmD21    152 wing disc ML-DmD32    158 haltere disc ML-DmD17-c3    105 eye-antennal disc ML-DmD11    191 antennal disc ML-DmD20-c5    117 mixed discs ML-DmD4-c1    252 CNS ML-DmBG1-c1    183 CNS ML-DmBG2-c2    45 tumorous blood cells mbn2    142 ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    111 Schneider line 2 Sg4    138 embryonic 1182-4H    119 embryonic GM2    69 embryonic Kc167    71 embryonic S1    159 embryonic S3    116 leg disc CME L1    194 wing disc CME-W2    73 wing disc ML-DmD8    116 wing disc ML-DmD9    297 wing disc ML-DmD16-c3    118 wing disc ML-DmD21    152 wing disc ML-DmD32    158 haltere disc ML-DmD17-c3    105 eye-antennal disc ML-DmD11    191 antennal disc ML-DmD20-c5    117 mixed discs ML-DmD4-c1    252 CNS ML-DmBG1-c1    183 CNS ML-DmBG2-c2    45 tumorous blood cells mbn2    142 ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (111) Schneider line 2 Sg4  (138) embryonic 1182-4H  (119) embryonic GM2  (69) embryonic Kc167  (71) embryonic S1  (159) embryonic S3  (116) leg disc CME L1  (194) wing disc CME-W2  (73) wing disc ML-DmD8  (116) wing disc ML-DmD9  (297) wing disc ML-DmD16-c3  (118) wing disc ML-DmD21  (152) wing disc ML-DmD32  (158) haltere disc ML-DmD17-c3  (105) eye-antennal disc ML-DmD11  (191) antennal disc ML-DmD20-c5  (117) mixed discs ML-DmD4-c1  (252) CNS ML-DmBG1-c1  (183) CNS ML-DmBG2-c2  (45) tumorous blood cells mbn2  (142) ovary fGS/OSS  (57) ovary OSC  (39) ovary OSS  27 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+  111 Schneider line 2 Sg4  138 embryonic 1182-4H  119 embryonic GM2    69 embryonic Kc167    71 embryonic S1  (159) embryonic S3  116 leg disc CME L1  (194) wing disc CME-W2    73 wing disc ML-DmD8  116 wing disc ML-DmD9  (297) wing disc ML-DmD16-c3  118 wing disc ML-DmD21  (152) wing disc ML-DmD32  (158) haltere disc ML-DmD17-c3  105 eye-antennal disc ML-DmD11  (191) antennal disc ML-DmD20-c5  117 mixed discs ML-DmD4-c1  (252) CNS ML-DmBG1-c1  (183) CNS ML-DmBG2-c2    45 tumorous blood cells mbn2  142 ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    111 Schneider line 2 Sg4    138 embryonic 1182-4H    119 embryonic GM2    69 embryonic Kc167    71 embryonic S1    159 embryonic S3    116 leg disc CME L1    194 wing disc CME-W2    73 wing disc ML-DmD8    116 wing disc ML-DmD9    297 wing disc ML-DmD16-c3    118 wing disc ML-DmD21    152 wing disc ML-DmD32    158 haltere disc ML-DmD17-c3    105 eye-antennal disc ML-DmD11    191 antennal disc ML-DmD20-c5    117 mixed discs ML-DmD4-c1    252 CNS ML-DmBG1-c1    183 CNS ML-DmBG2-c2    45 tumorous blood cells mbn2    142 ovary fGS/OSS    57 ovary OSC    39 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    134 cold shock, 4-day adult    104 heat shock, 4-day adult    244 Cadmium 50 mM 6 hrs, larvae L3    197 Cadmium 50 mM 12 hrs, larvae L3    108 Cadmium 50 mM 48 hrs, 4-day adult    212 Cadmium 100 mM 48 hrs, 4-day adult    169 Copper 0.5 mM 12 hrs, larvae L3    156 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    138 Zinc 4.5 mM 48 hrs, 4-day adult    209 Ethanol 2.5% 3 hrs, larvae L3    244 Ethanol 5% 3 hrs, larvae L3    264 Ethanol 10% 3 hrs, larvae L3    264 Caffeine 1.5 mg/ml 4 hrs, larvae L3    210 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    122 Paraquat 5 mM 48 hrs, 4-day adult    310 Paraquat 10 mM 48 hrs, 4-day adult    289 Rotenone 2 μg 12 hrs, larvae L3    188 Rotenone 8 μg 12 hrs, larvae L3    261 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (134) cold shock, 4-day adult  (104) heat shock, 4-day adult  (244) Cadmium 50 mM 6 hrs, larvae L3  (197) Cadmium 50 mM 12 hrs, larvae L3  (108) Cadmium 50 mM 48 hrs, 4-day adult  (212) Cadmium 100 mM 48 hrs, 4-day adult  (169) Copper 0.5 mM 12 hrs, larvae L3  (156) Copper 15 mM 48 hrs, 4-day adult  (102) Zinc 5 mM 12 hrs, larvae L3  (138) Zinc 4.5 mM 48 hrs, 4-day adult  (209) Ethanol 2.5% 3 hrs, larvae L3  (244) Ethanol 5% 3 hrs, larvae L3  (264) Ethanol 10% 3 hrs, larvae L3  (264) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (210) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  (122) Paraquat 5 mM 48 hrs, 4-day adult  (310) Paraquat 10 mM 48 hrs, 4-day adult  (289) Rotenone 2 μg 12 hrs, larvae L3  (188) Rotenone 8 μg 12 hrs, larvae L3  (261) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  (134) cold shock, 4-day adult  104 heat shock, 4-day adult  (244) Cadmium 50 mM 6 hrs, larvae L3  (197) Cadmium 50 mM 12 hrs, larvae L3  (108) Cadmium 50 mM 48 hrs, 4-day adult  (212) Cadmium 100 mM 48 hrs, 4-day adult  (169) Copper 0.5 mM 12 hrs, larvae L3  (156) Copper 15 mM 48 hrs, 4-day adult  102 Zinc 5 mM 12 hrs, larvae L3  (138) Zinc 4.5 mM 48 hrs, 4-day adult  (209) Ethanol 2.5% 3 hrs, larvae L3  (244) Ethanol 5% 3 hrs, larvae L3  (264) Ethanol 10% 3 hrs, larvae L3  (264) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (210) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  (122) Paraquat 5 mM 48 hrs, 4-day adult  (310) Paraquat 10 mM 48 hrs, 4-day adult  (289) Rotenone 2 μg 12 hrs, larvae L3  (188) Rotenone 8 μg 12 hrs, larvae L3  (261) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    134 cold shock, 4-day adult    104 heat shock, 4-day adult    244 Cadmium 50 mM 6 hrs, larvae L3    197 Cadmium 50 mM 12 hrs, larvae L3    108 Cadmium 50 mM 48 hrs, 4-day adult    212 Cadmium 100 mM 48 hrs, 4-day adult    169 Copper 0.5 mM 12 hrs, larvae L3    156 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    138 Zinc 4.5 mM 48 hrs, 4-day adult    209 Ethanol 2.5% 3 hrs, larvae L3    244 Ethanol 5% 3 hrs, larvae L3    264 Ethanol 10% 3 hrs, larvae L3    264 Caffeine 1.5 mg/ml 4 hrs, larvae L3    210 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    122 Paraquat 5 mM 48 hrs, 4-day adult    310 Paraquat 10 mM 48 hrs, 4-day adult    289 Rotenone 2 μg 12 hrs, larvae L3    188 Rotenone 8 μg 12 hrs, larvae L3    261 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    134 cold shock, 4-day adult    104 heat shock, 4-day adult    244 Cadmium 50 mM 6 hrs, larvae L3    197 Cadmium 50 mM 12 hrs, larvae L3    108 Cadmium 50 mM 48 hrs, 4-day adult    212 Cadmium 100 mM 48 hrs, 4-day adult    169 Copper 0.5 mM 12 hrs, larvae L3    156 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    138 Zinc 4.5 mM 48 hrs, 4-day adult    209 Ethanol 2.5% 3 hrs, larvae L3    244 Ethanol 5% 3 hrs, larvae L3    264 Ethanol 10% 3 hrs, larvae L3    264 Caffeine 1.5 mg/ml 4 hrs, larvae L3    210 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    122 Paraquat 5 mM 48 hrs, 4-day adult    310 Paraquat 10 mM 48 hrs, 4-day adult    289 Rotenone 2 μg 12 hrs, larvae L3    188 Rotenone 8 μg 12 hrs, larvae L3    261 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult  (134) cold shock, 4-day adult  (104) heat shock, 4-day adult  (244) Cadmium 50 mM 6 hrs, larvae L3  (197) Cadmium 50 mM 12 hrs, larvae L3  (108) Cadmium 50 mM 48 hrs, 4-day adult  (212) Cadmium 100 mM 48 hrs, 4-day adult  (169) Copper 0.5 mM 12 hrs, larvae L3  (156) Copper 15 mM 48 hrs, 4-day adult  (102) Zinc 5 mM 12 hrs, larvae L3  (138) Zinc 4.5 mM 48 hrs, 4-day adult  (209) Ethanol 2.5% 3 hrs, larvae L3  (244) Ethanol 5% 3 hrs, larvae L3  (264) Ethanol 10% 3 hrs, larvae L3  (264) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (210) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  (122) Paraquat 5 mM 48 hrs, 4-day adult  (310) Paraquat 10 mM 48 hrs, 4-day adult  (289) Rotenone 2 μg 12 hrs, larvae L3  (188) Rotenone 8 μg 12 hrs, larvae L3  (261) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult  134 cold shock, 4-day adult  104 heat shock, 4-day adult  (244) Cadmium 50 mM 6 hrs, larvae L3  (197) Cadmium 50 mM 12 hrs, larvae L3  108 Cadmium 50 mM 48 hrs, 4-day adult  (212) Cadmium 100 mM 48 hrs, 4-day adult  (169) Copper 0.5 mM 12 hrs, larvae L3  (156) Copper 15 mM 48 hrs, 4-day adult  102 Zinc 5 mM 12 hrs, larvae L3  138 Zinc 4.5 mM 48 hrs, 4-day adult  (209) Ethanol 2.5% 3 hrs, larvae L3  (244) Ethanol 5% 3 hrs, larvae L3  (264) Ethanol 10% 3 hrs, larvae L3  (264) Caffeine 1.5 mg/ml 4 hrs, larvae L3  (210) Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (166) Caffeine 25 mg/ml 48 hrs, 4-day adult  122 Paraquat 5 mM 48 hrs, 4-day adult  (310) Paraquat 10 mM 48 hrs, 4-day adult  (289) Rotenone 2 μg 12 hrs, larvae L3  (188) Rotenone 8 μg 12 hrs, larvae L3  (261) Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    134 cold shock, 4-day adult    104 heat shock, 4-day adult    244 Cadmium 50 mM 6 hrs, larvae L3    197 Cadmium 50 mM 12 hrs, larvae L3    108 Cadmium 50 mM 48 hrs, 4-day adult    212 Cadmium 100 mM 48 hrs, 4-day adult    169 Copper 0.5 mM 12 hrs, larvae L3    156 Copper 15 mM 48 hrs, 4-day adult    102 Zinc 5 mM 12 hrs, larvae L3    138 Zinc 4.5 mM 48 hrs, 4-day adult    209 Ethanol 2.5% 3 hrs, larvae L3    244 Ethanol 5% 3 hrs, larvae L3    264 Ethanol 10% 3 hrs, larvae L3    264 Caffeine 1.5 mg/ml 4 hrs, larvae L3    210 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    166 Caffeine 25 mg/ml 48 hrs, 4-day adult    122 Paraquat 5 mM 48 hrs, 4-day adult    310 Paraquat 10 mM 48 hrs, 4-day adult    289 Rotenone 2 μg 12 hrs, larvae L3    188 Rotenone 8 μg 12 hrs, larvae L3    261 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_10 mE1_20_mRNA_expression_cluster_10
External Data & Images
Linkouts	BDGP expression data • GM14349 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039737 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7920-RB;CG7920-RB;CG7920-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG7920 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal CG7920GD10613 partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 CG7920GD10613 Other Phenotypes Allele neuroanatomy defective | larval stage CG7920GD10613 visible, with Scer\GAL4pnr-MD237 CG7920GD10613 Phenotype manifest in Allele embryonic/larval neuroblast | larval stage CG7920GD10613 ganglion mother cell | larval stage CG7920GD10613 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG7920GD10613
Classical Alleles ( 10 )
For All Classical Alleles Show
Allele of CG7920 Class Mutagen Stocks Known lesion CG7920d05544 P-element activity 1 -- CG7920d07778 1 -- CG7920EY00580 P-element activity 1 -- CG7920EY03483 1 -- CG7920f04899 piggyBac transposase 1 -- CG7920CB-0078-3 0 -- CG7920CPTI002166 piggyBac transposase 0 Yes CG7920EP3096 0 -- CG7920EP3130 0 -- CG7920GS-A828 Delta2-3 0 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG7920 Class Mutagen Stocks Known lesion CG7920GD10613 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG7920NIG.7920R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)X3F (Cook, 2006.1.31)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10613} NA P{NIG.7920R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{RS3}CG7920CB-0078-3 NA PBac{681.P.FSVS-1}CG7920CPTI002166 NA PBac{WH}CG7920f04899 NA insertion of mobile activating element P{EP}CG7920EP3096 NA P{EP}CG7920EP3130 NA P{EPgy2}CG7920EY00580 NA P{EPgy2}CG7920EY03483 NA P{GSV1}CG7920GS-A828 NA P{XP}CG7920d05544 NA P{XP}CG7920d05928 NA P{XP}CG7920d07778 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neurogenesis inferred from mutant phenotype (Neumüller et al., 2011)
Cellular Component
CV term Evidence References
lipid particle inferred from direct assay (Beller et al., 2006)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
4-hydroxybutyrate CoA-transferase activity inferred from sequence or structural similarity with UniProtKB:P38942 (FlyBase, 1992-)
Biological Process
CV term Evidence References
acetyl-CoA metabolic process inferred from electronic annotation with InterPro:IPR003702 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG7920 - Aats-his anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Acon experimental knowledge based (Guruharsha et al., 2011) CG7920 - Ada anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Adh experimental knowledge based (Guruharsha et al., 2011) CG7920 - Argk experimental knowledge based (Guruharsha et al., 2011) CG7920 - Atx2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - B52 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG10077 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG10581 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG11505 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG13472 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG15118 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG15220 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG1785 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG3714 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG3817 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG4611 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG4612 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG5746 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG6330 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG6701 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG7091 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG7686 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG7903 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG8360 anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) CG7920 - CG8993 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG9775 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - CG9890 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - D1 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - GABPI anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Gpdh experimental knowledge based (Guruharsha et al., 2011) CG7920 - LSm3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Map205 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Mf experimental knowledge based (Guruharsha et al., 2011) CG7920 - Oat anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Optix anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Rbp1-like anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - RpL35A anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Rrp46 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Saf-B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - SmD2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - SmD3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - SmG anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Stat92E anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - Tm2 experimental knowledge based (Guruharsha et al., 2011) CG7920 - Zn72D anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - ana2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - btz anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - kdn experimental knowledge based (Guruharsha et al., 2011) CG7920 - mRpL42 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - mRpL44 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - mTerf3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - miple2 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - nito anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - phl anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - qkr58E-3 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - snama anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - snf anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - tub anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - up experimental knowledge based (Guruharsha et al., 2011) CG7920 - wds anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - wee anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG7920 - wupA experimental knowledge based (Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG7920 allele Gene References unspecified ct (Krupp et al., 2005) L (Singh et al., 2005)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68418 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039737 DroID - A comprehensive database of gene and protein interactions. • FBgn0039737 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43562
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6SBFHM Dipteran inclusive ortholog search EOG69KFZX Insect inclusive ortholog search EOG65HQSM Arthropod inclusive ortholog search EOG6HDR8Q Metazoa inclusive ortholog search EOG6R5BVZ
Orthologs in Drosophila Species (EOG6SBFHM)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG7920     Drosophila simulans   Dsim\GD17454 Y   Drosophila sechellia   Dsec\GM12194 Y   Drosophila erecta   Dere\GG11976 Y   Drosophila yakuba   Dyak\GE23426 Y   Drosophila ananassae   Dana\GF16210 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA20688 Y   Drosophila persimilis   Dper\GL13487 Y   Drosophila willistoni   Dwil\GK13373 Y   Drosophila virilis   Dvir\GJ14323 Y   Drosophila mojavensis   Dmoj\GI21964 Y   Drosophila grimshawi   Dgri\GH22150 Y
Orthologs in non-Drosophila Dipterans (EOG69KFZX)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL003746   Anopheles gambiae Malaria mosquito  Agam\AGAP004396   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003886
Orthologs in non-Dipteran Insects (EOG65HQSM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB49449   Apis mellifera Western honey bee  Amel\GB49448   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005661   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG005659   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH12730   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH12728   Atta cephalotes Leafcutter ant  Acep\ACEP16482   Atta cephalotes Leafcutter ant  Acep\ACEP16477   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17772   Camponotus floridanus Florida carpenter ant  Cflo\CFLO17773   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14114   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL14113   Linepithema humile Argentine ant  Lhum\LH18176   Linepithema humile Argentine ant  Lhum\LH18175   Pogonomyrmex barbatus Red harvester ant  Pbar\PB22519   Solenopsis invicta Red fire ant  Sinv\SINV22242   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001782   Bombyx mori Silkmoth  Bmor\BGIBMGA014217   Bombyx mori Silkmoth  Bmor\BGIBMGA014218   Pediculus humanus Human body louse  Phum\PHUM456180   Tribolium castaneum Red flour beetle  Tcas\TC012421
Orthologs in non-Insect Arthropods (EOG6HDR8Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_204077   Daphnia pulex Water flea  Dpux\JGI_V11_331345   Ixodes scapularis Deer tick  Isca\ISCW023591
Orthologs in non-Arthropod Metazoa (EOG6R5BVZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ZK1320.9   Caenorhabditis elegans Nematode  Cele\C44B7.10
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD17454 Drosophila sechellia Dsec\GM12194 Drosophila erecta Dere\GG11976 Drosophila yakuba Dyak\GE23426 Drosophila ananassae Dana\GF16210 Drosophila pseudoobscura pseudoobscura Dpse\GA20688 Drosophila persimilis Dper\GL13487 Drosophila willistoni Dwil\GK13373 Drosophila virilis Dvir\GJ14323 Drosophila mojavensis Dmoj\GI21964 Drosophila grimshawi Dgri\GH22150
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	15648 y1 w67c23; P{EPgy2}CG7920EY03483 15298 y1 w67c23; P{EPgy2}CG7920EY00580/TM3, Sb1 Ser1
Harvard	- P{XP}CG7920d05544 - P{XP}CG7920d07778 - PBac{WH}CG7920f04899
VDRC	v21577 w1118; P{GD10613}v21577
Genomic Clones ( 1 )
	BACR07A18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 204 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	GM14349
Other clones	DPiM_GM14349
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT01606 AT03033 AT03640 AT04327 AT05775 AT07384 AT07519 AT07786 AT08611 AT08770 AT09293 AT12120 AT12652 AT12869 AT13602 AT14865 AT19713 AT20129 AT21161 AT22792 AT23501 AT25124 AT26911 AT28845 AT30140 GH01089 GH01191 GH04783 GH05494 GH05685 GH05832 GH07406 GH07576 GH09054 GH09726 GH10405 GH10812 GH13029 GH13323 GH14324 GH14937 GH15009 GH15555 GH15663 GH15820 GH16251 GH18192 GH19582 GH19704 GH20123 GH20238 GH20933 GH20950 GH21738 GH22206 GH22508 GH23131 GH23423 GH23449 GH24007 GH24713 GH24923 GH25477 GH25622 GH25740 GH26781 GH26941 GH27115 GH28304 GH28546 GH28668 GM10989 GM14520 GM23633 HL02594 HL08115 LP01896 LP02265 LP03641 LP05822 LP09212 LP10140 LP13530 LP16155 LP16922 LP20219 LP22458 LP24348 RE14614 RE31731 RE32620 RE51693 RE70283 RH04471 RH06612 RH09545 RH11196 RH13455 RH17046 RH18288 RH19016 RH19122 RH19152 RH20847 RH20850 RH22563 RH24269 RH25358 RH26028 RH39742 RH44481 RH45312 RH48828 RH50006 RH50987 RH53240 RH54680 RH57657 RH58960 RH62705 RH63804 RH63928 RH65828 RH66270 RH72645 RH74703 SD01157 SD03246 SD04086 SD04667 SD05414 SD07160 SD07427 SD09075 SD11244 SD14655 SD15363 SD17840 SD18925 SD22519 SD27040
Other clones	35881 45058 53558 55131 59409 76883 161102 174317 191790 572742 572784 bs08e04 bs11f01 bs41h07 bs66f03 CK01.39C.G6 CK01.71B.G12 CK01.113B.A4 CK01.130D.G3 Dmel_dig_002443_0610_3670 Dmel_dig_007805_0646_3210 Dmel_dig_008128_0658_1953 Dmel_dig_008677_0693_1462 Dmel_dig_012671_0702_3246 Dmel_dig_013202_0643_2960 Dmel_neb_007311_0884_3356 Dmel_neb_008095_0885_0953 Dmel_neb_012545_0620_1748 Dmel_neb_013667_0818_3128 EK030609 EK056560 EK146936 EK160424 EK170929 EK182816 EK183734 EK294228 EN07309 EN16955 EN17047 EP05061 GH02390 GH16412 GH27164 HL05918 HL07713 LD06337 LD30188 LD36877 LP23793 RE34315 RE68560 RE71330 RH02439 RH10726 RH17896 RH18521 RH19403 RH19616 RH20773 RH54776
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0039737 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43562
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG7920 anon-WO0153538.36 anon-WO0153538.37 (FlyBase, 1996-)
Additional comments	Source for merge of CG7920 anon-WO0153538.36 anon-WO0153538.37 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	Identified with: GH02390.5prime <up>FlyBase curator comment: EST subsequently found to be chimeric</up>. (Oliver, 2001.8.16) EST GH02390 is chimeric; the 5' portion corresponds to part of CG7920, the 3' portion matches part of AE003813 on the opposite strand to Pcf11. (FlyBase, 1996-)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143505 NM_001276166 RefSeq (Proteins) • NP_651762 NP_001263095 DDBJ / EMBL / GenBank • AA803816 AAF56990 AAL39433 AAN14206 AGB96474 AI062993 AI113900 AI292703 AI945333 AW941387 AX201652 AX201653 AY069288 BZ748771 CZ474595 CZ487485 Entrez Gene - A searchable database of RefSeq genes. • 43562 UniProtKB/TrEMBL • Q8IMJ8 Q9VAC1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Acetyl-CoA hydrolase/transferase (IPR003702) Acetyl-CoA hydrolase/transferase C-terminal domain (IPR026888) 4-hydroxybutyrate coenzyme A transferase (IPR026887) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • GM14349
Linkouts
	BioGRID - A database of protein and genetic interactions • 68418 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0039737 DroID - A comprehensive database of gene and protein interactions. • FBgn0039737 DRSC - Results from RNAi screens. • FBgn0039737 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0039737 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG7920-RB;CG7920-RB;CG7920-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0039737 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43562 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43562 modMine - Data generated by the modENCODE project. • FBgn0039737
Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym	anon-WO0153538.36   anon-WO0153538.37   BEST:GH02390   CG7920 (Beller et al., 2006, Reiter et al., 2007, Dorus et al., 2006, Gerbasi et al., 2010, Nair et al., 2007, Wasbrough et al., 2010, Cammarato et al., 2011, Japanese National Institute of Genetics, 2012.5.21) GH02390.5prime (Oliver, 2001.8.16) i130 (Battersby et al., 2003)
Name Synonym	4-hydroxybutyrate Co-A transferase (Nair et al., 2007)
Secondary FlyBase IDs
	FBgn0045917 FBgn0045918 FBgn0046309
References ( 36 )
Generate a list of	All references relating to this gene ( 36 )
List References by type	Research paper  ( 8 ) Supplementary material  ( 11 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 3 ) Stock list  ( 1 ) Website  ( 1 ) Patent  ( 1 ) Curated genome annotation  ( 1 )
Recent research papers (0)
	All research papers listed in FlyBase were published before 2011 Show research papers ...