A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\CG2246

General Information
SymbolDmel\CG2246SpeciesD. melanogaster
NameAnnotation symbolCG2246
Feature typeprotein_coding_geneFlyBase IDFBgn0039790
Gene Model StatusCurrent Stock availability 9 publicly available
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map99F10-100A1Sequence location3R:26,418,691..26,427,211 [-]

Genomic Maps

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modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
This gene is referred to in FlyBase by the symbol Dmel\CG2246 (FBgn0039790). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ribose phosphate diphosphokinase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: nucleotide biosynthetic process. 10 alleles are reported. The phenotypes of these alleles are annotated with: trichogen cell; mesothoracic tergum. It has 13 annotated transcripts and 13 annotated polypeptides. Protein features are: Ribose-phosphate diphosphokinase. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult Malpighian tubules, adult salivary gland, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult heart, larval/adult fat body, larval salivary gland, adult female reproductive system, adult male accessory gland, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1629239_s_at completely aligns to an exonic region common to each of the 13 FlyBase-annotated transcript isoforms of CG2246. Gene sequence location is 3R:26418691..26427211.

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Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
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FB2012_01
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
99F10-100A1  
Limits computationally determined from genome sequence between P{PZ}ncd05884 and P{lacW}l(3)s2500s2500  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\CG2246 for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0302607 FBtr0302606 FBtr0085665 FBtr0085677 FBtr0085678 FBtr0085676 FBtr0302609 FBtr0302610 FBtr0085675 FBtr0302605 FBtr0302313 FBtr0085674 FBtr0302608 FBtr0085673 FBtr0300983 FBpp0085039 FBpp0085040 FBpp0291765 FBpp0291764 FBpp0291766 FBpp0085036 FBpp0085038 FBpp0291762 FBpp0291763 FBpp0085027 FBpp0291519 FBpp0291761 FBpp0085037 FBpp0085035 FBpp0290205 FBti0034860 FBti0045313 FBti0058267 FBti0044615 FBti0066287 FBti0039133 FBti0072500 FBti0052064 FBti0128299 FBti0107925
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0085673
  1740
  406
FBtr0085675
  1542
  387
FBtr0085674
  1524
  386
FBtr0085676
  1575
  367
FBtr0085678
  1632
  386
FBtr0085677
  1768
  367
FBtr0302313
  1584
  387
FBtr0302605
  1642
  406
FBtr0302606
  1739
  404
FBtr0302607
  1682
  385
FBtr0302608
  1467
  367
FBtr0302609
  1435
  367
FBtr0302610
  1570
  367
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0085035  
44.8  
406  
8.32  
FBpp0085037  
42.9  
387  
8.55  
FBpp0085036  
42.5  
386  
7.29  
FBpp0085038  
40.5  
367  
7.57  
FBpp0085040  
42.5  
386  
7.29  
FBpp0085039  
40.5  
367  
7.57  
FBpp0291519  
42.9  
387  
8.55  
FBpp0291761  
44.8  
406  
8.32  
FBpp0291762  
44.6  
404  
8.47  
FBpp0291763  
42.6  
385  
8.71  
FBpp0291764  
40.5  
367  
7.57  
FBpp0291765  
40.5  
367  
7.57  
FBpp0291766  
40.5  
367  
7.57  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view CG2246-RJ CG2246-RI CG31019-RA CG2246-RF CG2246-RE CG2246-RD CG2246-RL CG2246-RM CG2246-RB CG2246-RH CG2246-RG CG2246-RC CG2246-RK CG2246-RA CG31021-RB
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0039790


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0039790
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed at stages throughout embryogenesis, at stages throughout the larval period, at stages throughout the pupal period, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0039790 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3722)
embryo 02-04hr
 (1126)
embryo 04-06hr
 (1713)
embryo 06-08hr
 (1488)
embryo 08-10hr
 (1227)
embryo 10-12hr
 (1696)
embryo 12-14hr
 (2092)
embryo 14-16hr
 (3196)
embryo 16-18hr
 (3411)
embryo 18-20hr
 (3217)
embryo 20-22hr
 (2845)
embryo 22-24hr
 (3190)
larva L1
 (3597)
larva L2
 (2158)
larva L3 12hr old
 (1778)
larva L3 puffstage 1-2
 (1846)
larva L3 puffstage 3-6
 (2042)
larva L3 puffstage 7-9
 (2232)
white prepupae new
 (2922)
white prepupae 12hr
 (2367)
white prepupae 24hr
 (2480)
pupae 2d postWPP
 (1810)
pupae 3d postWPP
 (1730)
pupae 4d postWPP
 (1480)
adult male 01day
 (1575)
adult male 05day
 (1590)
adult male 30day
 (1808)
adult female 01day
 (3276)
adult female 05day
 (3437)
adult female 30day
 (3568)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3722)
embryo 02-04hr
 
 1126
embryo 04-06hr
 (1713)
embryo 06-08hr
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 (1696)
embryo 12-14hr
 (2092)
embryo 14-16hr
 (3196)
embryo 16-18hr
 (3411)
embryo 18-20hr
 (3217)
embryo 20-22hr
 (2845)
embryo 22-24hr
 (3190)
larva L1
 (3597)
larva L2
 (2158)
larva L3 12hr old
 (1778)
larva L3 puffstage 1-2
 (1846)
larva L3 puffstage 3-6
 (2042)
larva L3 puffstage 7-9
 (2232)
white prepupae new
 (2922)
white prepupae 12hr
 (2367)
white prepupae 24hr
 (2480)
pupae 2d postWPP
 (1810)
pupae 3d postWPP
 (1730)
pupae 4d postWPP
 1480
adult male 01day
 (1575)
adult male 05day
 (1590)
adult male 30day
 (1808)
adult female 01day
 (3276)
adult female 05day
 (3437)
adult female 30day
 (3568)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0039790 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3722)
embryo 02-04hr
 (1126)
embryo 04-06hr
 (1713)
embryo 06-08hr
 (1488)
embryo 08-10hr
 (1227)
embryo 10-12hr
 (1696)
embryo 12-14hr
 (2092)
embryo 14-16hr
 (3196)
embryo 16-18hr
 (3411)
embryo 18-20hr
 (3217)
embryo 20-22hr
 (2845)
embryo 22-24hr
 (3190)
larva L1
 (3597)
larva L2
 (2158)
larva L3 12hr old
 (1778)
larva L3 puffstage 1-2
 (1846)
larva L3 puffstage 3-6
 (2042)
larva L3 puffstage 7-9
 (2232)
white prepupae new
 (2922)
white prepupae 12hr
 (2367)
white prepupae 24hr
 (2480)
pupae 2d postWPP
 (1810)
pupae 3d postWPP
 (1730)
pupae 4d postWPP
 (1480)
adult male 01day
 (1575)
adult male 05day
 (1590)
adult male 30day
 (1808)
adult female 01day
 (3276)
adult female 05day
 (3437)
adult female 30day
 (3568)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (3722)
embryo 02-04hr
 
 1126
embryo 04-06hr
 1713
embryo 06-08hr
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 1696
embryo 12-14hr
 2092
embryo 14-16hr
 (3196)
embryo 16-18hr
 (3411)
embryo 18-20hr
 (3217)
embryo 20-22hr
 (2845)
embryo 22-24hr
 (3190)
larva L1
 (3597)
larva L2
 2158
larva L3 12hr old
 1778
larva L3 puffstage 1-2
 1846
larva L3 puffstage 3-6
 2042
larva L3 puffstage 7-9
 2232
white prepupae new
 (2922)
white prepupae 12hr
 2367
white prepupae 24hr
 (2480)
pupae 2d postWPP
 1810
pupae 3d postWPP
 1730
pupae 4d postWPP
 1480
adult male 01day
 1575
adult male 05day
 1590
adult male 30day
 1808
adult female 01day
 (3276)
adult female 05day
 (3437)
adult female 30day
 (3568)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 3722
embryo 02-04hr
 
 1126
embryo 04-06hr
 
 1713
embryo 06-08hr
 
 1488
embryo 08-10hr
 
 1227
embryo 10-12hr
 
 1696
embryo 12-14hr
 
 2092
embryo 14-16hr
 
 3196
embryo 16-18hr
 
 3411
embryo 18-20hr
 
 3217
embryo 20-22hr
 
 2845
embryo 22-24hr
 
 3190
larva L1
 
 3597
larva L2
 
 2158
larva L3 12hr old
 
 1778
larva L3 puffstage 1-2
 
 1846
larva L3 puffstage 3-6
 
 2042
larva L3 puffstage 7-9
 
 2232
white prepupae new
 
 2922
white prepupae 12hr
 
 2367
white prepupae 24hr
 
 2480
pupae 2d postWPP
 
 1810
pupae 3d postWPP
 
 1730
pupae 4d postWPP
 
 1480
adult male 01day
 
 1575
adult male 05day
 
 1590
adult male 30day
 
 1808
adult female 01day
 
 3276
adult female 05day
 
 3437
adult female 30day
 
 3568
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0039790


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0039790
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult Malpighian tubules, adult salivary gland, larval trachea. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, adult heart, larval/adult fat body, larval salivary gland, adult female reproductive system, adult male accessory gland, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0039790 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 
 1162.775
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 (648.7)
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 (584.3)
Larval Carcass
 
 284.6
Adult Head
 505.6
Adult Eye
 (1162.775)
Adult Brain
 (555.8)
Adult Thoracic-Abdominal Ganglion
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 (775.3)
Adult Fat Body
 
 189.5
Adult Salivary Gland
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 (1162.775)
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 
 1162.775
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0039790 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 
 1162.775
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 584.3
Larval Carcass
 
 284.6
Adult Head
 505.6
Adult Eye
 (1162.775)
Adult Brain
 555.8
Adult Thoracic-Abdominal Ganglion
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 1162.775
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 471.925
Larval Midgut
 
 380.7
Larval Hindgut
 
 463.2
Larval Malpighian Tubules
 
 648.7
Larval Fat Body
 
 408.3
Larval Salivary Gland
 
 315.5
Larval Trachea
 
 584.3
Larval Carcass
 
 284.6
Adult Head
 
 505.6
Adult Eye
 
 1162.775
Adult Brain
 
 555.8
Adult Thoracic-Abdominal Ganglion
 
 537.7
Adult Crop
 
 353.1
Adult Midgut
 
 326.5
Adult Hindgut
 
 450.9
Adult Malpighian Tubules
 
 775.3
Adult Fat Body
 
 189.5
Adult Salivary Gland
 
 524.3
Adult Heart
 
 204.175
Adult VirginFemale Spermatheca
 
 280.5
Adult InseminatedFemale Spermatheca
 
 294.6
Adult Ovary
 
 484.9
Adult Testis
 
 76.2
Adult Male Accessory Gland
 
 311.9
Adult Carcass
 
 211
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 505.6
 
NA 
Eye
 
 1162.775
 
NA 
Brain
 
 555.8
 
471.925 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 537.7
 
NA 
Crop
 
 353.1
 
380.7 
Midgut
 
 326.5
 
463.2 
Hindgut
 
 450.9
 
648.7 
Malpighian Tubules
 
 775.3
 
408.3 
Fat Body
 
 189.5
 
315.5 
Salivary Gland
 
 524.3
 
NA 
Heart
 
 204.175
 
584.3 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 280.5
 
NA 
InseminatedFemale Spermatheca
 
 294.6
 
NA 
Ovary
 
 484.9
 
NA 
Testis
 
 76.2
 
NA 
Male Accessory Gland
 
 311.9
 
284.6 
Carcass
 
 211

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyExpress - Embryonic expression images (BDGP data)
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 7 )
For All Classical Alleles Show

Allele of CG2246ClassMutagenStocksKnown lesion
CG2246c052871 --
CG2246DG257031 --
CG2246EY031431 --
CG2246f049141 --
CG2246PL004071 --
CG2246c035950 --
CG2246c067430 --
hide Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show

Allele of CG2246ClassMutagenStocksKnown lesion
CG2246GD165012 Yes
CG2246GD86432 Yes
CG2246KK1011380 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
hide Terms Based on Experimental Evidence ( 0 terms )
hide Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity with EMBL:AB007851
Biological Process
CV term
References
Cellular Component ( 0 terms)
hide Sequence Ontology: Class of Gene
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Protein-protein
Interacting group
Assay
References
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Interacts with
Please look at the allele data for full details of the genetic interactions
CG2246 allele
Gene
References
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Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 9 )
Bloomington
Harvard
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 60 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
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Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 1 )
Reported As
Symbol Synonym
Name Synonym
Secondary FlyBase IDs
hide References ( 18 )
Research paper
Philipps et al., 2004, RNA, N.Y. 10(12): 1838--1844
A computational and experimental approach toward a priori identification of alternatively spliced exons. [FBrf0180668]
Supplementary material
The modENCODE Consortium, 2010, Science 330(6012):
DataS14: Gene co-expression clusters. [FBrf0213979]
Mummery-Widmer et al., 2009, Nature 458(7241):
Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Giot et al., 2003, Science 302(5651):
Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase
Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510]
Gelbart, 2008.3.31, DG.xml
DG.xml [FBrf0204101]
Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center
RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Myrick et al., 2005.5.16, Deletion Generator Project genomic insertion collection.
Deletion Generator Project genomic insertion collection. [FBrf0188490]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.
Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
Haecker et al., 2004, Haecker insertions.
Haecker insertions. [FBrf0184338]
Ryder, 2004.4.26, Exelixis CG deletion data.
Exelixis CG deletion data. [FBrf0184335]
Robertson, 2001.7.7, Third set of annotation suggestions from bee ESTs.
Third set of annotation suggestions from bee ESTs. [FBrf0138600]
FlyBase analysis
FlyBase, 1992-, FlyBase curation
FlyBase curation. [FBrf0105495]
Computer file
Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection.
Genomic mapping of Exelixis insertion collection. [FBrf0184340]
Gene Disruption Project members, 2001-, [title not yet available]
[title not yet available] [FBrf0132177]
BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.
Berkeley Drosophila Genome Project. [FBrf0125078]
Curated genome annotation
Zhu, 1999.11, [Annotations performed at the Celera Jamboreee.]
[Annotations performed at the Celera Jamboreee.] [FBrf0126704]