Gene Dmel\CG1909

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General Information

Symbol

Dmel\CG1909

Species

D. melanogaster

Name

CG1909

Annotation symbol

CG1909

Feature type

protein_coding_gene

FlyBase ID

FBgn0039911

Created / Updated

2003-12-02/2003-12-02

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

102C2-102C2

Sequence location

4:603,737..609,976 [+]

Map ( GBrowse )

Summary Information

Automatically generated summary

See sections below for more information

This gene is referred to in FlyBase by the symbol CG1909 (FBgn0039911). It has the cytological map location 102C2. Its sequence location is 4:603737..609976. Its molecular function is described as: receptor binding; zinc ion binding. The biological processes in which it is involved are not known. 2 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides.

Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

102C2-102C2

Limits computationally determined from genome sequence between P{SUPor-P}Asator^KG05051&P{SUPor-P}KG01424 and PBac{3HPy⁺}C024

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Molecular Map Data

Gene Order (in direction of increasing cytology)

References

Gene Order (overall orientation not stated)

References

Gene Model & Products

Please see the GBrowse view of Dmel\CG1909 for information on other features

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

CG1909-RA

FBtr0089079

NM_143671

2400

606

CG1909-RB

FBtr0089080

NM_166773

2339

606

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kD)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

CG1909-PA

FBpp0088148

67.1

606

8.14

NP_651928

AAF59333

CG1909-PB

FBpp0088149

67.1

606

8.14

NP_726586

AAF59332

Additional Polypeptide Data & Comments

Reported size (kD)

Comments

External Data

Linkouts

PANTHER - Protein classification by function, families, and pathways

•

FBgn0039911

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, RING-type (IPR001841)

Tetratricopeptide-like helical (IPR011990)

Tetratricopeptide region (IPR013026)

Tetratricopeptide-related region (IPR011595)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q7K4Y8

Maps to

Does NOT map to

Identified with

GH22690

(BDGP Project Members, 2000-)

Mapped Features & Mutations

Please see GBrowse or insertion reports for information on insertions of transgenic constructs and features not listed here

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

DEDB - Drosophila exon database: splicing graphs

•

13596

Crossreferences

Expression Data

FlyBase-Curated Data

Transcript and
Protein data

Please see the FlyBase Gene Expression Report for details of gene expression from the literature.

Summary of Transcript Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Summary of Polypeptide Expression

Stage

Tissue/Position

Reference

Marker for

Subcellular Localization

CV Term

Microarray Data

Developmental timecourse, Costello et al., 2008 (Original data from Arbeitman et al., 2002)

Untitled Document detailed view

AI114365
AI403286

External Data & Images

Linkouts

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039911

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0039911

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0039911

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 1 )

For All Classical Alleles Show

Allele of CG1909	Class	Mutagen	Stocks	Known lesion
CG1909^C024			0	--

Alleles Carried on Transgenic Constructs ( 1 )

For All Alleles Carried on Transgenic Constructs Show

Allele of CG1909	Class	Mutagen	Stocks	Known lesion
CG1909^GD9675		in vitro construct \| RNAi in vitro construct \| regulatory fusion	1	Yes

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

UAS construct

P{GD9675}

Insertions

Type of insertions

Name

Expression data

miscellaneous insertions

PBac{3HPy⁺}CG1909^C024

Related Comments

Please look at the allele reports for the complete phenotype data

Gene Ontology: Function, Process & Cellular Component ( 3 )

Molecular Function

CV term

Evidence

References

receptor binding

inferred from sequence or structural similarity with MGD:Rapsn; MGI:MGI:99422

(FlyBase, 1992-)

zinc ion binding

inferred from electronic annotation with InterPro:IPR001841

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

Cellular Component

CV term

Evidence

References

nicotinic acetylcholine-gated receptor-channel complex

inferred from electronic annotation

(King et al., 2002.9.23)

Sequence Ontology: Class of Gene

protein_coding_gene

nuclear_gene

Interactions & Pathways

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

CG1909 allele

Gene

References

External Data

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

68633

Orthologs

Genome-wide drosophilid orthologs

Dana\GF22689

Dere\GG16394

Dgri\GH24018

Dmoj\GI14051

Dper\GL18145

Dpse\GA15125

Dsec\GM26802

Dsim\GD24408

Dvir\GJ19847

Dwil\GK13691

Dyak\GE14554

Curated drosophilid orthologs

Dpse\GA15125

Linkouts

InParanoid orthologs - Eukaryotic orthologs

•

ENSBTAP00000028986
Bos taurus (Ensembl)
ENSCAFP00000012765
Canis familiaris (Ensembl)
NEWSINFRUP00000149810
Takifugu rubripes (Ensembl)
ENSGALP00000013132
Gallus gallus (Ensembl)
ENSP00000298854
Homo sapiens (Ensembl)
ENSMMUP00000012423
Macaca mulatta (Ensembl)
ENSMODP00000024840
Monodelphis domestica (Ensembl)
ENSPTRP00000006198
Pan troglodytes (Ensembl)
ENSRNOP00000015149
Rattus norvegicus (Ensembl)
ENSXETP00000019823
Xenopus tropicalis (Ensembl)
WBGene00032384
Caenorhabditis briggsae (Wormbase)
WBGene00004507
Caenorhabditis elegans (Wormbase)
ZDB-GENE-030313-1
Danio rerio (Zfin)
MGI:99422
Mus musculus (Informatics)

Functional Complementation between Species

Inter-Species Misexpression Data

Produces phenotype in

Produces NO phenotype in

Stocks & Reagents

Stocks Listed in FlyBase ( 2 )

VDRC

v20745

w¹¹¹⁸; P{GD9675}v20745

Bloomington

16258

y¹ w¹¹¹⁸; PBac{3HPy⁺}C024

Genomic Clones ( 1 )

BACR44L03

cDNA Clones ( 13 )

Please Note

This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA Clones, Fully Sequenced

BDGP DGC clones

GH22690

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Affy Oligo

Linkouts

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0039911

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0039911

Antibody Information

Other Information

Discoverer

Etymology

Identification

Position Effect Variegation Data

Relationship to Other Genes

Source for database identity of

Source for database merge of

Additional comments

Comments About Role

Comments About Molecular Function

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

RefSeq (Transcripts)

•

RefSeq (Proteins)

•

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q7K4Y8

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Zinc finger, RING-type (IPR001841)

Tetratricopeptide-like helical (IPR011990)

Tetratricopeptide region (IPR013026)

Tetratricopeptide-related region (IPR011595)

Linkouts

BioGRID - Interaction data, including yeast 2-hybrid and genetic interactions

•

68633

DEDB - Drosophila exon database: splicing graphs

•

13596

DRSC - RNAi screening (Harvard): high-throughput cell culture data and design

•

FBgn0039911

FLIGHT - Cell culture data for RNAi and other high-throughput technologies

•

FBgn0039911

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

•

FBgn0039911

FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans

•

FBgn0039911

GEO (NCBI) - Gene expression data: microarray and other high-throughput technologies

•

FBgn0039911

GenomeRNAi - RNAi phenotypes (Heidelberg): high-throughput cell culture data

•

FBgn0039911

InParanoid orthologs - Eukaryotic orthologs

•

ENSBTAP00000028986
Bos taurus (Ensembl)
ENSCAFP00000012765
Canis familiaris (Ensembl)
NEWSINFRUP00000149810
Takifugu rubripes (Ensembl)
ENSGALP00000013132
Gallus gallus (Ensembl)
ENSP00000298854
Homo sapiens (Ensembl)
ENSMMUP00000012423
Macaca mulatta (Ensembl)
ENSMODP00000024840
Monodelphis domestica (Ensembl)
ENSPTRP00000006198
Pan troglodytes (Ensembl)
ENSRNOP00000015149
Rattus norvegicus (Ensembl)
ENSXETP00000019823
Xenopus tropicalis (Ensembl)
WBGene00032384
Caenorhabditis briggsae (Wormbase)
WBGene00004507
Caenorhabditis elegans (Wormbase)
ZDB-GENE-030313-1
Danio rerio (Zfin)
MGI:99422
Mus musculus (Informatics)

PANTHER - Protein classification by function, families, and pathways

•

FBgn0039911

University of Chicago Dev. Expression

•

FBgn0039911

Synonyms & Secondary IDs ( 1 )

Reported As

Symbol Synonym

CG1909

Name Synonym

CG1909

Secondary FlyBase IDs

References ( 9 )

Research paper

Sousa-Neves et al., 2005, Genetics 170(1): 127--138: High-resolution mapping of the Drosophila fourth chromosome using site-directed terminal deficiencies. [FBrf0187662]

Supplementary material

Giot et al., 2003, Science 302(5651):: Tables S1 to S7. [FBrf0166452]

Personal communication to FlyBase

Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center: RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327]
Berkeley Drosophila Genome Project, 2006.4.26, BDGP TI submission.: BDGP TI submission. [FBrf0188740]
FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
King et al., 2002.9.23, Frederick Roth's group predicted GO terms.: Frederick Roth's group predicted GO terms. [FBrf0155461]

FlyBase analysis

Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations.: Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955]
FlyBase, 1992-, FlyBase curation: FlyBase curation. [FBrf0105495]

Computer file

BDGP Project Members, 2000-, Berkeley Drosophila Genome Project.: Berkeley Drosophila Genome Project. [FBrf0125078]