FlyBase Gene Report: Dmel\Gat

General Information

Symbol

Dmel\Gat

Species

D. melanogaster

Name

GABA transporter

Annotation Symbol

CG1732

Feature Type

protein_coding_gene

FlyBase ID

FBgn0039915

Gene Model Status

Current

Stock Availability

9 publicly available

Gene Summary

GABA transporter (Gat) encodes a protein belonging to the SLC family that is expressed primarily in astrocytes, where it is thought to be required for uptake of GABA and other small molecules. It likely plays an important role in setting the excitatory/inhibitory balance of the CNS. [Date last reviewed: 2019-03-07] (FlyBase Gene Snapshot)

All Summaries

Gene Snapshot
Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

Sequence location

4:629,691..635,350 [+]

Recombination map

4-0

RefSeq locus

NC_004353 REGION:629691..635350

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse GBrowse

Help me choose

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

NCBI

UCSC

Ensembl

Function

GO Summary Ribbons

Gene Ontology (GO) Annotations (9 terms)

Molecular Function (1 term)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

enables gamma-aminobutyric acid:sodium symporter activity

inferred from sequence model

(Thimgan et al., 2006)

inferred from biological aspect of ancestor with PANTHER:PTN000177868

(assigned by GO_Central )

(Gaudet et al., 2011)

Biological Process (3 terms)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

involved_in cellular response to mechanical stimulus

inferred from direct assay

(Muthukumar et al., 2014)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

involved_in gamma-aminobutyric acid transport

inferred from sequence model

(Thimgan et al., 2006)

involved_in sodium ion transmembrane transport

inferred from biological aspect of ancestor with PANTHER:PTN000177662

(assigned by GO_Central )

(Gaudet et al., 2011)

Cellular Component (5 terms)

Terms Based on Experimental Evidence (2 terms)

CV Term

Evidence

References

located_in glial cell projection

inferred from direct assay

(Stork et al., 2014)

located_in plasma membrane

inferred from direct assay

(Stork et al., 2014)

Terms Based on Predictions or Assertions (3 terms)

CV Term

Evidence

References

located_in integral component of membrane

inferred from sequence model

(Thimgan et al., 2006)

is_active_in integral component of plasma membrane

inferred from biological aspect of ancestor with PANTHER:PTN000177662

(assigned by GO_Central )

(Gaudet et al., 2011)

is_active_in neuron projection

inferred from biological aspect of ancestor with PANTHER:PTN000177868

(assigned by GO_Central )

(Gaudet et al., 2011)

Gene Group (FlyBase)

SLC6 FAMILY OF SODIUM/CHLORIDE-DEPENDENT NEUROTRANSMITTER TRANSPORTERS

Protein Family (UniProt)

Protein Signatures (InterPro)

Summaries

Gene Snapshot

Gene Group (FlyBase)

SLC6 FAMILY OF SODIUM/CHLORIDE-DEPENDENT NEUROTRANSMITTER TRANSPORTERS -: Solute carrier family 6 (SLC6) members are Na⁺/Cl^--dependent transporters of extracellular neurotransmitters, amino acids and osmolytes across the plasma membrane into the cytosol. (Adapted from FBrf0193583).

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\Gat for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure New Section

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q9V4E7)

If you don't see the viewer to the right, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Comments on Gene Model

Low-frequency RNA-Seq exon junction(s) not annotated.

Gene model reviewed during 5.47

Multiphase exon postulated: exon reading frame differs in alternative transcripts; overlap >20aa.

Sequence Ontology: Class of Gene

nuclear_gene

protein_coding_gene

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

Gat-RA

FBtr0089972

NM_143673

2895

636

Gat-RB

FBtr0089971

NM_166779

2853

508

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank

Gat-PA

FBpp0088910

72.3

636

7.20

NP_651930

AAF59327

Gat-PB

FBpp0088909

56.8

508

6.63

NP_726594

AAN06506

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Nucleotide / Polypeptide Records

UniProt

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Gat using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

Linkouts

Expression Data

Expression Summary Ribbons

Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.

For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 13 -- 16

embryonic brain

(Fisher et al., 2012)

embryonic/larval nervous system

(Fisher et al., 2012)

larval ventral nerve cord

(Fisher et al., 2012)

third instar larval stage

optic lobe neuroepithelial cell

(Wang et al., 2013)

northern blot

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

(Romero-Calderon et al., 2007)

adult thorax | faint

Comment: Thorax and abdomen assayed together. Band of 3.2kb detected.

(Romero-Calderon et al., 2007)

adult abdomen | faint

Comment: Thorax and abdomen assayed together. Band of 3.2kb detected.

(Romero-Calderon et al., 2007)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

immunolocalization

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage -- adult stage

astrocyte-like glial cell

(Stork et al., 2014)

third instar larval stage

larval ventral nerve cord

(Stork et al., 2014)

astrocyte-like glial cell

(Coutinho-Budd et al., 2017)

adult stage

astrocyte-like glial cell

• membrane

(Muthukumar et al., 2014)

mass spectroscopy

Stage

Tissue/Position (including subcellular localization)

Reference

adult stage

adult head

• membrane

(Aradska et al., 2015)

western blot

Stage

Tissue/Position (including subcellular localization)

Reference

pharate adult stage P8

adult brain | faint

(Muthukumar et al., 2014)

pharate adult stage P9 -- P15

adult brain

(Muthukumar et al., 2014)

adult stage

adult brain

(Muthukumar et al., 2014)

Additional Descriptive Data

Gat protein is exclusively detected in the membrane surface of astrocytes in embryos, larvae, pupae, and adults.

(Stork et al., 2014)

Marker for

astrocyte-like glial cell

(Coutinho-Budd et al., 2017)

Subcellular Localization

CV Term

Evidence

References

located_in glial cell projection

inferred from direct assay

(Stork et al., 2014)

located_in plasma membrane

inferred from direct assay

(Stork et al., 2014)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Gat in GBrowse 2

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\Gat

View exonic expression by tissue for Dmel\Gat

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0039915

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

43805/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0039915

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0039915

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0039915

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG1732

Flygut - An atlas of the Drosophila adult midgut

FBgn0039915

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\Gat

Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 5 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 4 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of Gat

Transgenic constructs containing regulatory region of Gat

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene disrupted in

Df(4)Gat^Δ64kb

(Stork et al., 2014)

Inferred from location ( 0 )

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal | recessive

Gat^eya

lethal - all die during embryonic stage

Gat^22-1

lethal - all die during embryonic stage (with Df(4)Gat^Δ64kb)

Gat^22-1

viable, with Dcr-2^UAS.cDa, Scer\GAL4^elav.PLu

Gat^GD5029

viable, with Scer\GAL4^Mef2.PR

Gat^GD5029

viable, with Scer\GAL4^nSyb.PS

Gat^KK107895

viable, with Scer\GAL4^pnr-MD237

Gat^GD5029

viable, with Scer\GAL4^repo.PU

Gat^KK107895

viable, with Scer\GAL4^tin.CΔ4

Gat^GD5029

Other Phenotypes

Allele

abnormal locomotor behavior | third instar larval stage, with Scer\GAL4^alrm.PD

Phenotype manifest in

Allele

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v8.0)

Homo sapiens (Human) (19)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Hsap\SLC6A1

14 of 15

Yes

Hsap\SLC6A11

6 of 15

Yes

Hsap\SLC6A12

6 of 15

Yes

Hsap\SLC6A13

6 of 15

Yes

Hsap\SLC6A6

5 of 15

Yes

Hsap\SLC6A8

4 of 15

Yes

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

Model Organism Orthologs (via DIOPT v8.0)

Mus musculus (laboratory mouse) (22)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Mmus\Slc6a1

13 of 15

Yes

Mmus\Slc6a11

6 of 15

Yes

Mmus\Slc6a12

6 of 15

Yes

Mmus\Slc6a13

6 of 15

Yes

Mmus\Slc6a6

5 of 15

Yes

Mmus\Slc6a8

5 of 15

Yes

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

1 of 15

Yes

Rattus norvegicus (Norway rat) (21)

Rnor\Slc6a1

12 of 13

Yes

Rnor\Slc6a11

6 of 13

Yes

Rnor\Slc6a12

6 of 13

Yes

Rnor\Slc6a13

6 of 13

Yes

Rnor\Slc6a6

5 of 13

Yes

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

Yes

3 of 13

3 of 13

3 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

2 of 13

1 of 13

Yes

Xenopus tropicalis (Western clawed frog) (23)

Xtro\LOC100127682

8 of 12

Yes

Xtro\slc6a1

7 of 12

Yes

Xtro\slc6a6

4 of 12

Yes

Xtro\slc6a8

4 of 12

Yes

Xtro\slc6a8

4 of 12

Yes

Xtro\slc6a13

4 of 12

Yes

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

3 of 12

Yes

3 of 12

3 of 12

2 of 12

2 of 12

2 of 12

2 of 12

1 of 12

Yes

Xtro\LOC100497766

1 of 12

Yes

Xtro\LOC101731472

1 of 12

Yes

Xtro\slc6a4

1 of 12

Xtro\slc6a14.1

1 of 12

Yes

Danio rerio (Zebrafish) (37)

Drer\slc6a1b

13 of 15

Yes

Drer\slc6a1l

11 of 15

Yes

Drer\slc6a1a

10 of 15

Yes

Drer\slc6a13

6 of 15

Yes

Drer\si:ch211-132b12.1

5 of 15

Yes

Drer\si:ch211-132b12.2

5 of 15

Yes

Drer\si:ch211-132b12.3

5 of 15

Yes

Drer\slc6a6a

5 of 15

Yes

Drer\slc6a8

5 of 15

Yes

Drer\slc6a11a

5 of 15

Yes

Drer\slc6a11b

5 of 15

Yes

Drer\slc6a22.1

5 of 15

Yes

Drer\slc6a22.2

5 of 15

Yes

Drer\si:ch211-117c9.5

4 of 15

Yes

Drer\zgc:158427

4 of 15

Yes

Drer\si:ch211-132b12.6

3 of 15

Yes

3 of 15

3 of 15

3 of 15

3 of 15

Yes

3 of 15

3 of 15

3 of 15

3 of 15

3 of 15

Drer\si:ch211-132b12.4

2 of 15

Yes

Drer\si:ch211-225b11.1

2 of 15

Drer\si:ch211-283g2.1

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

1 of 15

1 of 15

Yes

Caenorhabditis elegans (Nematode, roundworm) (16)

Cele\snf-11

15 of 15

Yes

Cele\snf-3

3 of 15

Yes

3 of 15

3 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

2 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

1 of 15

Arabidopsis thaliana (thale-cress) (0)

No records found.

Saccharomyces cerevisiae (Brewer's yeast) (0)

No records found.

Schizosaccharomyces pombe (Fission yeast) (0)

No records found.

Other Organism Orthologs (via OrthoDB)

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v8.0)

Drosophila melanogaster (Fruit fly) (22)

Gene Symbol

Score

Source

Alignment

4 of 10

4 of 10

4 of 10

4 of 10

4 of 10

DAT

4 of 10

ine

4 of 10

List

4 of 10

NAAT1

4 of 10

Ntl

4 of 10

4 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

3 of 10

bdg

2 of 10

2 of 10

2 of 10

2 of 10

1 of 10

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Model Summary Ribbon

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 1 )

Human Ortholog

Disease

Evidence

References

SLC6A8; solute carrier family 6 member 8

model of creatine transporter deficiency

IEA

(FlyBase, 2019-)

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

SLC6A1; solute carrier family 6 member 1

14 of 15

137165

MYOCLONIC-ATONIC EPILEPSY; MAE

SLC6A11; solute carrier family 6 member 11

6 of 15

607952

SLC6A12; solute carrier family 6 member 12

6 of 15

603080

SLC6A13; solute carrier family 6 member 13

6 of 15

615097

SLC6A6; solute carrier family 6 member 6

5 of 15

186854

HYPOTAURINEMIC RETINAL DEGENERATION AND CARDIOMYOPATHY; HTRDC

SLC6A8; solute carrier family 6 member 8

4 of 15

300036

CEREBRAL CREATINE DEFICIENCY SYNDROME 1; CCDS1

creatine transporter deficiency

SLC6A2; solute carrier family 6 member 2

3 of 15

163970

ORTHOSTATIC INTOLERANCE

postural orthostatic tachycardia syndrome

SLC6A3; solute carrier family 6 member 3

3 of 15

126455

SLC6A4; solute carrier family 6 member 4

3 of 15

182138

anxiety disorder

SLC6A7; solute carrier family 6 member 7

3 of 15

606205

SLC6A9; solute carrier family 6 member 9

3 of 15

601019

GLYCINE ENCEPHALOPATHY WITH NORMAL SERUM GLYCINE

SLC6A15; solute carrier family 6 member 15

3 of 15

607971

SLC6A16; solute carrier family 6 member 16

3 of 15

607972

SLC6A17; solute carrier family 6 member 17

3 of 15

610299

MENTAL RETARDATION, AUTOSOMAL RECESSIVE 48; MRT48

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Interactions Browser

Summary of Genetic Interactions

esyN Network Diagram

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

External Data

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0039915

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0039915

External Data

Linkouts

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

4-0

Cytogenetic map

102D1-102D1

Sequence location

4:629,691..635,350 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

102D1-102D1

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

4-0

(FlyBase, 2016)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (9)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

60775

y¹; Mi{MIC}Gat^MI04635

29422

y¹ v¹; P{TRiP.JF03358}attP2

83256

y¹ w^*; TI{CRIMIC.TG4.0}Gat^{CR01191-TG4.0}

90850

y¹ w^*; TI{TI}Crk^dsRed/TI{GMR-HMS04515}Gat^eya

60866

y¹; Mi{MIC}Gat^MI14399/In(4)ci^D, ci^D pan^ciD

93683

y¹ w¹¹¹⁸; Mi{DH.2}pan^{MI03329-DH.GT-TG4.2}/TI{GMR-HMS04515}Gat^eya

90852

y¹ w^*; TI{GMR-HMS04515}Gat^eya/In(4)ci^D, ci^D pan^ciD

VDRC

v106638

P{KK107895}VIE-260B

v13359

w¹¹¹⁸; P{GD5029}v13359

Genomic Clones (12)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (93)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0039915

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0039915

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

43805

Antibody Information

Laboratory Generated Antibodies

polyclonal

(Stork et al., 2014)

Commercially Available Antibodies

Other Information

Relationship to Other Genes

Source for database identify of

Source for identity of: Gat CG1732

(Stork et al., 2014)

Source for database merge of

Source for merge of: CG1732 anon-WO0149848.11

(FlyBase, 1996-)

Additional comments

Source for merge of CG1732 anon-WO0149848.11 was sequence comparison ( date:051113 ).

(FlyBase, 1996-)

Other Comments

Origin and Etymology

Discoverer

Etymology

Identification

External Crossreferences and Linkouts ( 43 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

43805

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q9V4E7

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q9V4E7

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0039915

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0039915

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

43805/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0039915

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0039915

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0039915

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG1732

Flygut - An atlas of the Drosophila adult midgut

FBgn0039915

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0039915

GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents

43805

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

Dmel_CG1732

MARRVEL_MODEL - MARRVEL (model organism gene)

43805

modMine - A data warehouse for the modENCODE project

FBgn0039915

Linkouts

DroID - A comprehensive database of gene and protein interactions.

FBgn0039915

DRSC - Results frm RNAi screens

FBgn0039915

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0039915

FlyMine - An integrated database for Drosophila genomics

FBgn0039915

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Synonyms and Secondary IDs (9)

Reported As

Symbol Synonym

CG1732a

(Miller et al., 2008)

DmGAT

(Miller et al., 2008)

GAT

(Bittern et al., 2021, Nagai et al., 2021, Nyberg et al., 2020, Freeman, 2015, Huang et al., 2015, Muthukumar et al., 2014)

Gat

(Goyal et al., 2022, Rounds et al., 2022, Kwon and Beitel, 2020.7.17, Brunet Avalos et al., 2019, Mazaud et al., 2019, Croset et al., 2018, Gene Disruption Project members, 2018-, Losada-Perez, 2018, Weiler et al., 2017, Stork et al., 2014)

anon-WO0149848.11

dGAT

(Romero-Calderon et al., 2007)

gat

(Stork et al., 2014)

Name Synonyms

GABA transporter

(Freeman, 2015, Neckameyer and Cooper, 1998)

Secondary FlyBase IDs