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Gene Dmel\tara

General Information
Symbol	Dmel\tara	Species	D. melanogaster
Name	taranis	Annotation symbol	CG6889
Feature type	protein_coding_gene	FlyBase ID	FBgn0040071
Gene Model Status	Current	Stock availability	45 publicly available
Also Known As	l(3)03881
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	89B8-89B9	Sequence location	3R:12,051,371..12,086,024 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene taranis is referred to in FlyBase by the symbol Dmel\tara (CG6889, FBgn0040071). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: lateral inhibition; wing disc dorsal/ventral pattern formation; chromatin-mediated maintenance of transcription. 94 alleles are reported. The phenotypes of these alleles are annotated with: wing vein L5; trichogen cell; macrochaeta; haltere; mesothoracic tergum; tormogen cell; scutellar bristle; wing; arista. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: SERTA. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 06-24 hour embryonic stages, during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval hindgut, larval Malpighian tubules, larval/adult fat body, larval salivary gland, adult spermathecae, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1641380_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of tara. Gene sequence location is 3R:12051371..12086024.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 89B8-89B9   Limits computationally determined from genome sequence between P{PZ}blp01618 and P{PZ}gish04895&P{EP}EP3171
Experimentally Determined Cytological Location
Cytogenetic map Notes References 89B-89B   (determined by in situ hybridisation)   (Fauvarque et al., 2001) 89B-89C   (determined by in situ hybridisation)   (Abdelilah-Seyfried et al., 2000) 89B13-89B16     (Bourbon, 2000.1.21) 89B12-89B15   (determined by in situ hybridisation)   (Spradling et al., 1999) 83C1-83C2   87B4--6 89B12--15   (BDGP Project Members, 1994-1999)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tara for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) tara-RA FBtr0083257  NM_080255   4316   916 tara-RB FBtr0083258  NM_169709   4000   912
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein tara-PA   FBpp0082711   96.2   916   5.64     NP_524994   AAF55288 tara-PB   FBpp0082712   95.7   912   5.55     NP_732120   AAN13701
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SERTA (IPR009263)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA142266   AE014297 AAF55288   AE014297 AAN13701   AF227211 AAF43017   AF227212 AAF43018   AF227213 AAF43019   AF227213 AAF43020   AI513385   AQ025188   AQ025275   AQ072996   AQ073318   AQ073795   AQ073892   AQ074003   AQ074023   AQ074125   AQ254609   AQ254890   AX482657   BI170758   BI614678   BT014924   BT021316 AAX33464   BT099632   CK662365   CL943659   CO179692   CO187815   CO271085   CO294153   CO311996   CO321918   CO322577   CO326012   CO327630   CO341697   CO342668   CZ468828   CZ470832   CZ470918   CZ471813   CZ472062   CZ473094   CZ473128   CZ474393   CZ475199   CZ476728   CZ476990   CZ476992   CZ477569   CZ479071   CZ480475   CZ481310   CZ481335   CZ481584   CZ482918   CZ482919   CZ483481   CZ484143   CZ485115   CZ488824   CZ489672   CZ489673   CZ489688   CZ489689   DN154094   EC059432   EC063528   EC064150   EC066137   EC075224   EC076415   EC081334   EC085192   EC090403   EC197433   EC200589   EC206636   EC212158   EC231145   EC231146   EC231418   EC245617   EC251982   EC257241   EC260449   EL874841   GH774736   GH775764   GH787003   GH823511   GH900217
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9NHB9 Q9VEX7 Q9NHC1 Q9NHC2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 4 -- 6   dorsal ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi ventral ectoderm anlage   (Fisher et al., 2012) Comment:anlage in statu nascendi embryonic stage 7 -- 8   antennal anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage central brain anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal head epidermis anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage visual anlage   (Fisher et al., 2012) Comment:reported as procephalic ectoderm anlage dorsal ectoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) ventral ectoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   inclusive hindgut primordium   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   fat body primordium   (Fisher et al., 2012) Comment:reported as fat body specific anlage hindgut proper primordium   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic/larval nervous system   (Fisher et al., 2012) embryonic/larval somatic muscle   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult crop, larval hindgut, larval Malpighian tubules, larval/adult fat body, larval salivary gland, adult spermathecae, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    459.725 Larval Midgut    92.7 Larval Hindgut    105.4 Larval Malpighian Tubules    118.4 Larval Fat Body    142.2 Larval Salivary Gland    112.4 Larval Trachea    98.4 Larval Carcass    117.25 Adult Head    85.1 Adult Eye    48.575 Adult Brain    196.1 Adult Thoracic-Abdominal Ganglion    129.4 Adult Crop    134.9 Adult Midgut    82.8 Adult Hindgut    64.7 Adult Malpighian Tubules    52.6 Adult Fat Body    131.4 Adult Salivary Gland    64.5 Adult Heart    76.9 Adult VirginFemale Spermatheca    202.2 Adult InseminatedFemale Spermatheca    192.5 Adult Ovary    33.2 Adult Testis    5.9 Adult Male Accessory Gland    27.8 Adult Carcass    71 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    85.1   NA  Eye    48.575   NA  Brain    196.1   459.725  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    129.4   NA  Crop    134.9   92.7  Midgut    82.8   105.4  Hindgut    64.7   118.4  Malpighian Tubules    52.6   142.2  Fat Body    131.4   112.4  Salivary Gland    64.5   NA  Heart    76.9   98.4  Trachea    NA   NA  VirginFemale Spermatheca    202.2   NA  InseminatedFemale Spermatheca    192.5   NA  Ovary    33.2   NA  Testis    5.9   NA  Male Accessory Gland    27.8   117.25  Carcass    71 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (33) central nervous system, larvae L3  (38) central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (33) central nervous system, larvae L3  (38) central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    33 central nervous system, larvae L3    38 central nervous system, pupae P8    16 head, virgin 1-day female    5 head, virgin 4-day female    8 head, virgin 20-day female    7 head, mated 1-day female    8 head, mated 4-day female    8 head, mated 20-day female    8 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    9 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    6 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    4 fat body, white prepupae    7 fat body, pupae P8    11 carcass, larvae L3 wandering    20 carcass, 1-day adult    4 carcass, 4-day adult    5 carcass, 20-day adult    7 ovary, virgin 4-day female    2 ovary, mated 4-day female    2 testis, mated 4-day male    0 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 06-24 hour embryonic stages, during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr  (36) embryo 08-10hr    25 embryo 10-12hr  (33) embryo 12-14hr    24 embryo 14-16hr  26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr  (31) white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr  (36) embryo 08-10hr    25 embryo 10-12hr  (33) embryo 12-14hr    24 embryo 14-16hr  26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr  31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    4 embryo 02-04hr    6 embryo 04-06hr    15 embryo 06-08hr    36 embryo 08-10hr    25 embryo 10-12hr    33 embryo 12-14hr    24 embryo 14-16hr    26 embryo 16-18hr    18 embryo 18-20hr    19 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    13 larva L2    8 larva L3 12hr old    10 larva L3 puffstage 1-2    7 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    17 white prepupae 12hr    31 white prepupae 24hr    24 pupae 2d postWPP    17 pupae 3d postWPP    7 pupae 4d postWPP    8 adult male 01day    5 adult male 05day    6 adult male 30day    6 adult female 01day    6 adult female 05day    4 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    11 Schneider line 2 Sg4    3 embryonic 1182-4H    16 embryonic GM2    3 embryonic Kc167    20 embryonic S1    13 embryonic S3    11 leg disc CME L1    2 wing disc CME-W2    11 wing disc ML-DmD8    10 wing disc ML-DmD9    13 wing disc ML-DmD16-c3    14 wing disc ML-DmD21    5 wing disc ML-DmD32    20 haltere disc ML-DmD17-c3    18 eye-antennal disc ML-DmD11    17 antennal disc ML-DmD20-c5    11 mixed discs ML-DmD4-c1    4 CNS ML-DmBG1-c1    13 CNS ML-DmBG2-c2    4 tumorous blood cells mbn2    2 ovary fGS/OSS    8 ovary OSC    4 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    6 cold shock, 4-day adult    6 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    4 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    6 Zinc 4.5 mM 48 hrs, 4-day adult    5 Ethanol 2.5% 3 hrs, larvae L3    4 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    3 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    4 Paraquat 10 mM 48 hrs, 4-day adult    4 Rotenone 2 μg 12 hrs, larvae L3    3 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_11 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	BDGP expression data • RE12330 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040071 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6889-RB FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for tara Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal taraCB03523 taraT190-168 lethal (with Df(3R)sbd26) taraL4 taraR19 taraR38 taraR40 taraR47 taraR58 taraR75 taraR91 taraR108 lethal (with taraL4) taraR19 taraR38 taraR40 taraR47 taraR58 taraR75 taraR91 taraR108 lethal (with taraR19) taraL4 lethal (with taraR38) taraL4 lethal (with taraR40) taraL4 lethal (with taraR47) taraL4 lethal (with taraR58) taraL4 lethal (with taraR75) taraL4 lethal (with taraR91) taraL4 lethal (with taraR108) taraL4 lethal | recessive tara1 tara03881 tara05117 tara05472 tara05584 tara07870 taraj1C5 taraL4 taraR47 taraR108 partially lethal - majority live, with Scer\GAL4[-]: taraEP3463 viable taraCB02767 taraEY14814 taraR19 taraβ.Ubi-p63E viable, with Scer\GAL4[-]: taraEP508 taraEP3427 viable, with Scer\GAL4pnr-MD237 taraGD10757 viable | poor taraR51 Sterility Allele fertile taraEY14814 taraβ.Ubi-p63E Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 taraGD10757 learning defective | adult stage tara11.244 visible, with Scer\GAL4pnr-MD237 taraGD10757 visible, with Scer\GAL4sca-537.4 taraEP3463 visible, with taraL4 taraβ.Ubi-p63E visible, with taraβ.Ubi-p63E taraL4 visible | dominant tara03881 wild-type taraβ.Ubi-p63E wild-type, with Scer\GAL4[-]: taraEP508 Phenotype manifest in Allele adult abdominal sensillum | ectopic, with Scer\GAL4[-]: taraEP3463 arista, with taraL4 taraβ.Ubi-p63E arista, with taraβ.Ubi-p63E taraL4 chaeta | supernumerary, with Scer\GAL4pnr-MD237 taraGD10757 haltere, with taraL4 taraβ.Ubi-p63E haltere, with taraβ.Ubi-p63E taraL4 macrochaeta taraBG02229 taraBG02394 mesothoracic tergum, with Scer\GAL4pnr-MD237 taraGD10757 scutellar bristle, with Scer\GAL4sca-537.4 taraEP3463 tormogen cell, with Scer\GAL4sca-537.4 taraEP3463 trichogen cell, with Scer\GAL4pnr-MD237 taraGD10757 trichogen cell, with Scer\GAL4sca-537.4 taraEP3463 wing tara03881 taraR19 taraR51 wing, with Scer\GAL4[-]: taraEP3427 taraEP3463 wing, with taraL4 taraβ.Ubi-p63E wing, with taraβ.Ubi-p63E taraL4 wing | posterior compartment, with Scer\GAL4en-e16E taraUY641 wing vein L5, with Scer\GAL4[-]: taraEP3463
Classical Alleles ( 89 )
For All Classical Alleles Show
Allele of tara Class Mutagen Stocks Known lesion taraBG01673 P-element activity 2 -- tara03881 P-element activity 1 -- tara1 Delta2-3 1 Yes tara5-HA-1289 1 -- tara5-SZ-3110 1 -- tarac03809 piggyBac transposase 1 -- tarac06591 piggyBac transposase 1 -- tarac06681 piggyBac transposase 1 -- taraCB-0132-3 1 -- taraCB-0887-3 1 -- taraCB-5020-3 1 -- taraCB-6706-3 1 -- taraCB-6743-3 1 -- tarad00808 P-element activity 1 -- tarad01145 P-element activity 1 -- tarad01618 1 -- tarad03006 P-element activity 1 -- tarad03087 1 -- tarad09406 P-element activity 1 -- tarae00328 1 -- tarae01264 piggyBac transposase 1 -- tarae02703 piggyBac transposase 1 -- tarae03548 piggyBac transposase 1 -- taraEY01434 1 -- taraEY01909 1 -- taraEY03864 1 -- taraf00449 piggyBac transposase 1 -- taraf00994 piggyBac transposase 1 -- taraf02589 piggyBac transposase 1 -- taraf06172 piggyBac transposase 1 -- taraf06933 piggyBac transposase 1 -- taraKG02557 1 -- taraKG03207 1 -- taraKG04466 1 -- taraMI06915 1 -- taraNP0426 1 -- taraNP0648 1 -- taraNP0688 1 -- taraNP2347 1 -- taraUM-8187-3 1 -- tara05117 P-element activity 0 -- tara05472 P-element activity 0 -- tara05584 P-element activity 0 -- tara07870 P-element activity 0 -- tara11.244 0 Yes tara20 ethyl methanesulfonate 0 -- tara2 ethyl methanesulfonate 0 -- taraBG02229 P-element activity 0 Yes taraBG02394 P-element activity 0 Yes taraCB-0703-3 0 -- taraCB02767 P-element activity 0 Yes taraCB03523 P-element activity 0 Yes tarad02950 P-element activity 0 -- tarad05215 P-element activity 0 -- tarad06543 P-element activity 0 -- tarad09878 P-element activity 0 -- tarad09880 P-element activity 0 -- tarad11127 P-element activity 0 -- taraDG05307 P-element activity 0 -- taraDG14401 P-element activity 0 -- tarae03580 piggyBac transposase 0 -- tarae03834 piggyBac transposase 0 -- taraEP1145 P-element activity 0 Yes taraEP1189 P-element activity 0 Yes taraEP3-1575 0 -- taraEP3095 P-element activity 0 Yes taraEP3178 P-element activity 0 Yes taraEP3294 P-element activity 0 Yes taraEP3427 P-element activity 0 Yes taraEP3463 P-element activity 0 Yes taraEP3530 P-element activity 0 Yes taraEP508 P-element activity 0 Yes taraEP693 P-element activity 0 Yes taraEY14814 P-element activity 0 -- taraf01676 piggyBac transposase 0 -- taraf06947 piggyBac transposase 0 -- taraj1C5 P-element activity 0 -- taraL4 loss of function allele Delta2-3 0 Yes taraR108 Delta2-3 0 Yes taraR19 Delta2-3 0 Yes taraR38 Delta2-3 0 Yes taraR40 Delta2-3 0 Yes taraR47 Delta2-3 0 Yes taraR51 Delta2-3 0 Yes taraR58 Delta2-3 0 Yes taraR75 Delta2-3 0 Yes taraR91 Delta2-3 0 Yes taraT190-168 P-element activity 0 Yes taraUY641 P-element activity 0 --
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tara Class Mutagen Stocks Known lesion taraGD10757 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes taraJF01421 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes taraKK111458 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes taraNIG.6889R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes taraβ.Ubi-p63E in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)bxd100 (Spradling et al., 1999, BDGP Project Members, 1994-1999) Df(3R)Exel6268 (Ryder, 2004.4.26) Df(3R)sbd26 (Fauvarque et al., 2001, Calgaro et al., 2002) Df(3R)sbd45 (Fauvarque et al., 2001, Calgaro et al., 2002) Df(3R)sbd104 (BDGP Project Members, 1994-1999) Df(3R)sbd105 (Spradling et al., 1999)
Not disrupted in	Df(3R)P10 (BDGP Project Members, 1994-1999) Df(3R)P115 (BDGP Project Members, 1994-1999) Df(3R)sbd105 (Fauvarque et al., 2001)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD10757} NA P{KK111458} NA P{NIG.6889R} NA P{TRiP.JF01421} NA characterization construct P{Ubi-p63E-tara.β} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}taraEP3-1575 NA P{EP}taraEP508 NA P{EP}taraEP693 NA P{EP}taraEP1145 NA P{EP}taraEP1189 NA P{EP}taraEP3095 NA P{EP}taraEP3178 NA P{EP}taraEP3294 NA P{EP}taraEP3427 NA P{EP}taraEP3463 NA P{EP}taraEP3530 NA P{EPgy2}taraEY01434 NA P{EPgy2}taraEY01909 NA P{EPgy2}taraEY03864 NA P{EPgy2}taraEY14814 NA P{GSV1}C618C618 NA P{GSV1}GSd309GSd309 NA P{GSV1}GSd413GSd413 NA P{GSV1}GSd439b NA P{GSV1}GSd485GSd485 NA P{Mae-UAS.6.11}taraUY641 NA P{XP}tarad00808 NA P{XP}tarad01145 NA P{XP}tarad01524 NA P{XP}tarad01618 NA P{XP}tarad02950 NA P{XP}tarad03006 NA P{XP}tarad03087 NA P{XP}tarad05215 NA P{XP}tarad06543 NA P{XP}tarad09406 NA P{XP}tarad09878 NA P{XP}tarad09880 NA P{XP}tarad11127 NA miscellaneous insertions Mi{MIC}taraMI06915 NA P{attP.w+.attP}JB89B NA P{CaryP}attP64 NA P{GT1}taraBG01673 NA P{GT1}taraBG02229 NA P{GT1}taraBG02394 NA P{PTT-GB}taraCB02767 NA P{PTT-GB}taraCB03523 NA P{RS3}taraCB-0132-3 NA P{RS3}taraCB-0703-3 NA P{RS3}taraCB-0887-3 NA P{RS3}taraCB-5020-3 NA P{RS3}taraCB-6706-3 NA P{RS3}taraCB-6743-3 NA P{RS3}taraUM-8187-3 NA P{RS5}tara5-HA-1289 NA P{RS5}tara5-SZ-3110 NA P{SUPor-P}taraKG02557 NA P{SUPor-P}taraKG03207 NA P{SUPor-P}taraKG04466 NA P{T1}taraT190-168 NA P{UAS-LUC.M}attP64 NA P{wHy}taraDG05307 NA P{wHy}taraDG14401 NA PBac{HpaI-GFP.A}YD0165 NA PBac{PB}tarac03809 NA PBac{PB}tarac06591 NA PBac{PB}tarac06681 NA PBac{RB}tarae00328 NA PBac{RB}tarae01264 NA PBac{RB}tarae02703 NA PBac{RB}tarae03548 NA PBac{RB}tarae03580 NA PBac{RB}tarae03834 NA PBac{WH}taraf00449 NA PBac{WH}taraf00994 NA PBac{WH}taraf01676 NA PBac{WH}taraf02589 NA PBac{WH}taraf06172 NA PBac{WH}taraf06933 NA PBac{WH}taraf06947 NA insertion of enhancer trap binary system P{GawB}tara11.244 No P{GawB}taraNP0426 No P{GawB}taraNP0648 No P{GawB}taraNP0688 No P{GawB}taraNP2347 No insertion of enhancer trap P{lacW}tara1 No P{lacW}taraj1C5 No P{lacW}taraL4 No P{PZ}tara03881 No P{PZ}tara05117 No P{PZ}tara05472 No P{PZ}tara05584 No P{PZ}tara07870 No
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
chromatin-mediated maintenance of transcription inferred from genetic interaction with brm (Gutierrez et al., 2003, Calgaro et al., 2002) inferred from genetic interaction with osa (Gutierrez et al., 2003, Calgaro et al., 2002) inferred from genetic interaction with pb (Calgaro et al., 2002) inferred from genetic interaction with Pc (Calgaro et al., 2002) inferred from genetic interaction with ph-p (Calgaro et al., 2002) inferred from genetic interaction with tna (Gutierrez et al., 2003) inferred from genetic interaction with trx (Calgaro et al., 2002) lateral inhibition inferred from mutant phenotype (Mummery-Widmer et al., 2009) wing disc dorsal/ventral pattern formation inferred from genetic interaction with Bx, ap (Bejarano et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
tara - Pp2A-29B anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) tara - mts anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) tara - tws anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tara allele Gene References tara1 brm (Calgaro et al., 2002) osa (Calgaro et al., 2002) Pc (Fauvarque et al., 2001, Calgaro et al., 2002) ph-p (Fauvarque et al., 2001, Calgaro et al., 2002) tara2 brm (Gutierrez et al., 2003) osa (Gutierrez et al., 2003) tna (Gutierrez et al., 2003) tara20 brm (Gutierrez et al., 2003) osa (Gutierrez et al., 2003) tna (Gutierrez et al., 2003) tara03881 osa (Gutierrez et al., 2003) tna (Gutierrez et al., 2003) taraEP3463 pnr (Pena-Rangel et al., 2002) taraL4 brm (Calgaro et al., 2002) osa (Calgaro et al., 2002) pb (Calgaro et al., 2002) Pc (Calgaro et al., 2002) ph-p (Calgaro et al., 2002)
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 72793 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0040071 DroID - A comprehensive database of gene and protein interactions. • FBgn0040071 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 53562
Orthologs
OrthoDB Orthologs (10) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6Q85JB Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6Q85JB)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\tara     Drosophila simulans   Dsim\GD19083 Y   Drosophila sechellia   Dsec\GM15140 Y   Drosophila erecta   Dere\GG16988 Y   Drosophila yakuba   Dyak\GE24381 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19931 Y   Drosophila persimilis   Dper\GL12361 Y   Drosophila virilis   Dvir\GJ23393 Y   Drosophila mojavensis   Dmoj\GI22666 Y   Drosophila grimshawi   Dgri\GH18775 Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19083 Drosophila sechellia Dsec\GM15140 Drosophila erecta Dere\GG16988 Drosophila yakuba Dyak\GE24381 Drosophila ananassae Dana\GF23054 Drosophila pseudoobscura pseudoobscura Dpse\GA19931 Drosophila persimilis Dper\GL12361 Drosophila willistoni Dwil\GK14470 Drosophila virilis Dvir\GJ23393 Drosophila mojavensis Dmoj\GI22666 Drosophila grimshawi Dgri\GH18775
Stocks & Reagents
Stocks Listed in FlyBase ( 45 )
Harvard	- P{XP}tarad00808 - P{XP}tarad01145 - P{XP}tarad01618 - P{XP}tarad03006 - P{XP}tarad03087 - P{XP}tarad09406 - PBac{PB}tarac03809 - PBac{PB}tarac06591 - PBac{PB}tarac06681 - PBac{RB}tarae00328 - PBac{RB}tarae01264
VDRC	v107508 P{KK111458}VIE-260B
	More stocks available...
Genomic Clones ( 2 )
	BACR05P04 BACR37I18 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 43 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT25373 RE12330 RE26467
Other clones	DPiM_RE12330
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH26572 LP22521 RH44125
Other clones	50348 50523 62773 66218 70499 73621 78921 104137 149287 193666 214343.69 214413.28 214571.33 CK01.40B.C6 CK01.77A.E6 CK01.103B.C4 CK01.109C.G11 CK01.133B.H5 CK00053 EK033733 EK060251 EK101931 EK176629 EK186807 EK188424 EK206216 EK227617 EP07744 EP12963 EP15314 IP14921 RP003032206 RP003139393 RP003172393 RP003267146 RP003435969
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0040071 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 53562
Antibody Information
Other Information
Discoverer
Etymology
	The gene is named "taranis" for a Celtic god. (Calgaro et al., 2002)
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: tara anon-WO0257455.25 (FlyBase, 1996-) Source for merge of: tara CG6889 (Bayraktaroglu, 2000.8.7) Source for merge of: tara l(3)03881 (Bourbon, 2000.10.31)
Additional comments	Source for merge of tara anon-WO0257455.25 was sequence comparison (date:051113). (FlyBase, 1996-)
Other Comments
	tara loss of function mutations act as genetic antagonists to the Polycomb group genes Pc and ph-p and enhance the phenotypic effects of the trithorax group genes trx, brm and osa. (Calgaro et al., 2002) tara is a novel trithorax-group member. (Bourbon, 2000.10.31) Identification: Enhancer trap expression pattern survey for loci expressed in the ring gland. (Harvie et al., 1998)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_080255 NM_169709 RefSeq (Proteins) • NP_524994 NP_732120 DDBJ / EMBL / GenBank • AAF43017 AAF43018 AAF43019 AAF43020 AAF55288 AAN13701 AAX33464 AF227211 AF227212 AF227213 AQ025188 AQ025275 AQ072996 AQ073318 AQ073795 AQ073892 AQ074003 AQ074023 AQ074125 AQ254609 AQ254890 AX482657 BI170758 BT021316 CL943659 CZ468828 CZ470832 CZ470918 CZ471813 CZ472062 CZ473094 CZ473128 CZ474393 CZ475199 CZ476728 CZ476990 CZ476992 CZ477569 CZ479071 CZ480475 CZ481310 CZ481335 CZ481584 CZ482918 CZ482919 CZ483481 CZ484143 CZ485115 CZ488824 CZ489672 CZ489673 CZ489688 CZ489689 Entrez Gene - A searchable database of RefSeq genes. • 53562 UniProtKB/TrEMBL • Q9NHB9 Q9NHC1 Q9NHC2 Q9VEX7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SERTA (IPR009263) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE12330
Linkouts
	BioGRID - A database of protein and genetic interactions • 72793 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0040071 DroID - A comprehensive database of gene and protein interactions. • FBgn0040071 DRSC - Results from RNAi screens. • FBgn0040071 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040071 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG6889-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0040071 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 53562 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 53562 modMine - Data generated by the modENCODE project. • FBgn0040071
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	5472 (Harvie et al., 1998) anon-WO0257455.25   CG6889 (Norga et al., 2003, Raisin et al., 2003, Quinones-Coello, 2007, Quinones-Coello, 2007, Molnar et al., 2006, Keleman et al., 2009.8.5, Ni et al., 2008, Weber et al., 2012) EP(3)3463 (Abdelilah-Seyfried et al., 2000) l(3)03881 (Spradling et al., 1999, BDGP Project Members, 1994-1999, ) l(3)j1C5   l(3)jlC5 (Hummel et al., 2002) tara (Ji et al., 2012, Buszczak et al., 2007, Gan et al., 2010, Canudas et al., 2005, Quinones-Coello, 2007, Quinones-Coello, 2007, Haynes et al., 2006, Liebl et al., 2006, Molnar et al., 2006, FlyBase Curators, 2008, Minidorff et al., 2007, Kankel et al., 2007, Minidorff et al., 2007, Vázquez et al., 2008, Markstein et al., 2008, Ghosh and Feany, 2004, Branco et al., 2008, Abruzzi et al., 2011, Takahashi et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Fukunaga et al., 2012) Tara (Cook, 2008.8.18)
Name Synonym	taranis (Bourbon, 2000.1.21, Bejarano et al., 2008, Kankel et al., 2007, Eddison et al., 2012, Fukunaga et al., 2012)
Secondary FlyBase IDs
	FBgn0010823 FBgn0011312 FBgn0038408 FBgn0063795
References ( 68 )
Generate a list of	All references relating to this gene ( 68 )
List References by type	Research paper  ( 35 ) Supplementary material  ( 8 ) Review  ( 1 ) Personal communication to FlyBase  ( 16 ) FlyBase analysis  ( 3 ) DNA/RNA sequence record  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Patent  ( 1 )
Recent research papers ( 7 )
	Eddison et al., 2012, PLoS ONE 7(12): e51684 A genetic screen for olfactory habituation mutations in Drosophila: analysis of novel foraging alleles and an underlying neural circuit. [FBrf0220425] Fisher et al., 2012, Proc. Natl. Acad. Sci. U.S.A. 109(52): 21330--21335 DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila. [FBrf0220344] Fukunaga et al., 2012, Cell 151(3): 533--546 Dicer Partner Proteins Tune the Length of Mature miRNAs in Flies and Mammals. [FBrf0219804] Ji et al., 2012, G3 (Bethesda) 2(12): 1651--1660 In Vivo Regulation of E2F1 by Polycomb Group Genes in Drosophila. [FBrf0220353] Takahashi et al., 2012, Evolution 66(9): 2878--2890 Deficiency screening for genomic regions with effects on environmental sensitivity of the sensory bristles of Drosophila melanogaster. [FBrf0219405] Weber et al., 2012, Genetics 191(1): 145--162 Novel regulators of planar cell polarity: a genetic analysis in Drosophila. [FBrf0218210] Abruzzi et al., 2011, Genes Dev. 25(22): 2374--2386 Drosophila CLOCK target gene characterization: implications for circadian tissue-specific gene expression. [FBrf0216798] Show all research papers ...
Recent reviews (0)
	All reviews listed in FlyBase were published before 2011 Show reviews ...