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Gene Dmel\c12.1

General Information
Symbol	Dmel\c12.1	Species	D. melanogaster
Name	c12.1	Annotation symbol	CG12135
Feature type	protein_coding_gene	FlyBase ID	FBgn0040235
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	8D7-8D7	Sequence location	X:9,211,948..9,213,256 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene c12.1 is referred to in FlyBase by the symbol Dmel\c12.1 (CG12135, FBgn0040235). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: mitotic spindle organization. 5 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has one annotated transcript and one annotated polypeptide. Protein features are: Pre-mRNA-splicing factor Cwf15/Cwc15. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. Comments on Affy2 ProbeSet: ProbeSet 1627616_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of c12.1. Gene sequence location is X:9211948..9213256.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 8D7-8D7   Limits computationally determined from genome sequence between P{EP}EP1450&P{EP}EP1356 and P{EP}EP912EP912
Experimentally Determined Cytological Location
Cytogenetic map Notes References 8D8-8D9     (Fair, 1999.12.19)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\c12.1 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Supported by strand-specific RNA-Seq data. Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) c12.1-RA FBtr0071324  NM_144348   1246   259
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein c12.1-PA   FBpp0071259   28.4   259   7.61     NP_652605   AAF46488
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pre-mRNA-splicing factor Cwf15/Cwc15 (IPR006973)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA141465   AA141466   AA438645   AA440561   AE014298 AAF46488   AF217651 AAF35309   AI388196   AI514972   AW943858   AY069693 AAL39838   BF488795   BF488834   BI167566   BI167729   BI169573   BI173511   BI213571   BI216033   BI228405   BI235905   BI236583   BI237252   BI241670   BI241994   BI358232   BI362753   BI367610   BI368417   BI371318   BI484673   BI586843   BI591158   BI631705   BI637397   CO178177   CO187603   CO189943   CO278509   CO287337   CO298617   CO325745   EC057939   EC068347   EC072016   EC072635   EC076033   EC077564   EC197953   EC205788   EC212334   EC217954   EC244104   EV580916   EV581795   EV582416   GH741086   GH741414   GH742552   GH762034   GH762970   GH763213   GH766838   GH768996
UniProtKB/Swiss-Prot	Q9V3B6
UniProtKB/TrEMBL
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   dorsal pharyngeal muscle   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) embryonic/larval muscle system   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) organism | ubiquitous   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, larval/adult fat body, larval/adult salivary gland, larval trachea, adult ovary, adult male accessory gland, larval carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    206.5 Larval Midgut    143.5 Larval Hindgut    145 Larval Malpighian Tubules    160.1 Larval Fat Body    110.2 Larval Salivary Gland    153.3 Larval Trachea    121.8 Larval Carcass    137.55 Adult Head    113.4 Adult Eye    106.875 Adult Brain    137.4 Adult Thoracic-Abdominal Ganglion    104.1 Adult Crop    118 Adult Midgut    118.9 Adult Hindgut    119.9 Adult Malpighian Tubules    71.5 Adult Fat Body    124.6 Adult Salivary Gland    136.2 Adult Heart    68.15 Adult VirginFemale Spermatheca    99.1 Adult InseminatedFemale Spermatheca    99.2 Adult Ovary    194.1 Adult Testis    61.8 Adult Male Accessory Gland    171.1 Adult Carcass    89.4 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    113.4   NA  Eye    106.875   NA  Brain    137.4   206.5  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    104.1   NA  Crop    118   143.5  Midgut    118.9   145  Hindgut    119.9   160.1  Malpighian Tubules    71.5   110.2  Fat Body    124.6   153.3  Salivary Gland    136.2   NA  Heart    68.15   121.8  Trachea    NA   NA  VirginFemale Spermatheca    99.1   NA  InseminatedFemale Spermatheca    99.2   NA  Ovary    194.1   NA  Testis    61.8   NA  Male Accessory Gland    171.1   137.55  Carcass    89.4 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (44) central nervous system, larvae L3  (37) central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  (28) digestive system, larvae L3 wandering  (28) digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering  (28) carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female  (58) ovary, mated 4-day female  (42) testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (44) central nervous system, larvae L3  (37) central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae  28 digestive system, larvae L3 wandering  28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering  28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female  (58) ovary, mated 4-day female  (42) testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    44 central nervous system, larvae L3    37 central nervous system, pupae P8    24 head, virgin 1-day female    16 head, virgin 4-day female    17 head, virgin 20-day female    15 head, mated 1-day female    13 head, mated 4-day female    11 head, mated 20-day female    15 head, mated 1-day male    14 head, mated 4-day male    15 head, mated 20-day male    15 salivary gland, larvae L3 wandering    6 salivary gland, white prepupae    28 digestive system, larvae L3 wandering    28 digestive system, 1-day adult    17 digestive system, 4-day adult    13 digestive system, 20-day adult    14 fat body, larvae L3 wandering    7 fat body, white prepupae    19 fat body, pupae P8    11 carcass, larvae L3 wandering    28 carcass, 1-day adult    9 carcass, 4-day adult    12 carcass, 20-day adult    13 ovary, virgin 4-day female    58 ovary, mated 4-day female    42 testis, mated 4-day male    24 accessory gland, mated 4-day male    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-12 and 18-24 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    109 embryo 04-06hr    118 embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (68) embryo 02-04hr  (109) embryo 04-06hr  (118) embryo 06-08hr  (97) embryo 08-10hr  (95) embryo 10-12hr  (97) embryo 12-14hr  (52) embryo 14-16hr  (52) embryo 16-18hr  (42) embryo 18-20hr  (37) embryo 20-22hr  (54) embryo 22-24hr  (40) larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  (30) white prepupae new  (29) white prepupae 12hr  (29) white prepupae 24hr  (29) pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day  (36) adult female 30day  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr  (109) embryo 04-06hr  (118) embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    109 embryo 04-06hr    118 embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    109 embryo 04-06hr    118 embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (68) embryo 02-04hr  (109) embryo 04-06hr  (118) embryo 06-08hr  (97) embryo 08-10hr  (95) embryo 10-12hr  (97) embryo 12-14hr  (52) embryo 14-16hr  (52) embryo 16-18hr  (42) embryo 18-20hr  (37) embryo 20-22hr  (54) embryo 22-24hr  (40) larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9  30 white prepupae new  29 white prepupae 12hr  29 white prepupae 24hr  29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day  (36) adult female 30day  (36) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr  109 embryo 04-06hr  118 embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    68 embryo 02-04hr    109 embryo 04-06hr    118 embryo 06-08hr    97 embryo 08-10hr    95 embryo 10-12hr    97 embryo 12-14hr    52 embryo 14-16hr    52 embryo 16-18hr    42 embryo 18-20hr    37 embryo 20-22hr    54 embryo 22-24hr    40 larva L1    25 larva L2    20 larva L3 12hr old    16 larva L3 puffstage 1-2    17 larva L3 puffstage 3-6    24 larva L3 puffstage 7-9    30 white prepupae new    29 white prepupae 12hr    29 white prepupae 24hr    29 pupae 2d postWPP    22 pupae 3d postWPP    13 pupae 4d postWPP    12 adult male 01day    13 adult male 05day    17 adult male 30day    14 adult female 01day    25 adult female 05day    36 adult female 30day    36 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4  (43) embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167  (55) embryonic S1  (43) embryonic S3  (41) leg disc CME L1  (36) wing disc CME-W2  (29) wing disc ML-DmD8  (33) wing disc ML-DmD9  (71) wing disc ML-DmD16-c3  (60) wing disc ML-DmD21  (95) wing disc ML-DmD32  (35) haltere disc ML-DmD17-c3  (70) eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  (55) mixed discs ML-DmD4-c1  (43) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2  (42) tumorous blood cells mbn2  (66) ovary fGS/OSS  (51) ovary OSC  (41) ovary OSS  (27) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (58) Schneider line 2 Sg4  (43) embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167  (55) embryonic S1  (43) embryonic S3  (41) leg disc CME L1  (36) wing disc CME-W2  29 wing disc ML-DmD8  (33) wing disc ML-DmD9  (71) wing disc ML-DmD16-c3  (60) wing disc ML-DmD21  (95) wing disc ML-DmD32  (35) haltere disc ML-DmD17-c3  (70) eye-antennal disc ML-DmD11  (54) antennal disc ML-DmD20-c5  (55) mixed discs ML-DmD4-c1  (43) CNS ML-DmBG1-c1  (44) CNS ML-DmBG2-c2  (42) tumorous blood cells mbn2  (66) ovary fGS/OSS  (51) ovary OSC  (41) ovary OSS  27 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    58 Schneider line 2 Sg4    43 embryonic 1182-4H    16 embryonic GM2    24 embryonic Kc167    55 embryonic S1    43 embryonic S3    41 leg disc CME L1    36 wing disc CME-W2    29 wing disc ML-DmD8    33 wing disc ML-DmD9    71 wing disc ML-DmD16-c3    60 wing disc ML-DmD21    95 wing disc ML-DmD32    35 haltere disc ML-DmD17-c3    70 eye-antennal disc ML-DmD11    54 antennal disc ML-DmD20-c5    55 mixed discs ML-DmD4-c1    43 CNS ML-DmBG1-c1    44 CNS ML-DmBG2-c2    42 tumorous blood cells mbn2    66 ovary fGS/OSS    51 ovary OSC    41 ovary OSS    27 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult  (37) Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult  (33) Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3  (34) Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult  (33) Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult  (37) Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult  (33) Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3  (34) Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (37) Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult  (33) Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    16 cold shock, 4-day adult    10 heat shock, 4-day adult    21 Cadmium 50 mM 6 hrs, larvae L3    21 Cadmium 50 mM 12 hrs, larvae L3    21 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    37 Copper 0.5 mM 12 hrs, larvae L3    17 Copper 15 mM 48 hrs, 4-day adult    33 Zinc 5 mM 12 hrs, larvae L3    15 Zinc 4.5 mM 48 hrs, 4-day adult    24 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    18 Ethanol 10% 3 hrs, larvae L3    14 Caffeine 1.5 mg/ml 4 hrs, larvae L3    15 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    37 Caffeine 25 mg/ml 48 hrs, 4-day adult    16 Paraquat 5 mM 48 hrs, 4-day adult    33 Paraquat 10 mM 48 hrs, 4-day adult    25 Rotenone 2 μg 12 hrs, larvae L3    20 Rotenone 8 μg 12 hrs, larvae L3    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_17 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	BDGP expression data • LD46621 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040235 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12135-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for c12.1 Stages(s) 1-3 Stages(s) 4-6 Stages(s) 7-8 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele partially lethal - majority die | pupal stage, with Scer\GAL4pnr-MD237 c12.1GD7501 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 c12.1GD7501 Phenotype manifest in Allele mesothoracic tergum, with Scer\GAL4pnr-MD237 c12.1GD7501
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of c12.1 Class Mutagen Stocks Known lesion c12.1GG01819 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of c12.1 Class Mutagen Stocks Known lesion c12.1GD7501 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes c12.1HMS00382 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes c12.1KK102389 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes c12.1NIG.12135R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7501} NA P{KK102389} NA P{NIG.12135R} NA P{TRiP.HMS00382} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap P{lacW}l(1)G0200G0200 No P{lacW}l(1)G0249G0249 No P{lacW}l(1)G0453G0453 No insertion of mobile activating element P{Mae-UAS.6.11}c12.1GG01819 NA
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
	There is no information supporting a molecular function term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 3 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
mitotic spindle organization inferred from mutant phenotype (Goshima et al., 2007)
Cellular Component
CV term Evidence References
catalytic step 2 spliceosome inferred from direct assay (Herold et al., 2009) precatalytic spliceosome inferred from direct assay (Herold et al., 2009)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
mRNA splicing, via spliceosome inferred by curator from GO:0071011|GO:0071013 (Herold et al., 2009) inferred from electronic annotation with InterPro:IPR006973 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
c12.1 - CG4872 experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting (Guruharsha et al., 2011, Mintseris et al., 2009.11.23) c12.1 - Cdc5 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) c12.1 - Hsp68 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) c12.1 - P32 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) c12.1 - Plod anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions c12.1 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 72723 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0040235 DroID - A comprehensive database of gene and protein interactions. • FBgn0040235 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 53435
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WSWX1 Dipteran inclusive ortholog search EOG6CNR1B Insect inclusive ortholog search EOG631ZVJ Arthropod inclusive ortholog search EOG6NP5KZ Metazoa inclusive ortholog search EOG6ZD611
Orthologs in Drosophila Species (EOG6WSWX1)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\c12.1     Drosophila simulans   Dsim\GD24660 Y   Drosophila sechellia   Dsec\GM22219 Y   Drosophila erecta   Dere\GG18981 Y   Drosophila yakuba   Dyak\GE15453 Y   Drosophila ananassae   Dana\GF21803 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA11429 Y   Drosophila persimilis   Dper\GL16509 Y   Drosophila willistoni   Dwil\GK25556 Y   Drosophila virilis   Dvir\GJ19417 Y   Drosophila mojavensis   Dmoj\GI14379 Y   Drosophila grimshawi   Dgri\GH12902 Y
Orthologs in non-Drosophila Dipterans (EOG6CNR1B)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL014295   Anopheles gambiae Malaria mosquito  Agam\AGAP010594   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ014049
Orthologs in non-Dipteran Insects (EOG631ZVJ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC408632   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012588   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16460   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH26709   Atta cephalotes Leafcutter ant  Acep\ACEP10821   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21238   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL12382   Linepithema humile Argentine ant  Lhum\LH19456   Pogonomyrmex barbatus Red harvester ant  Pbar\PB12709   Solenopsis invicta Red fire ant  Sinv\SINV18162   Acyrthosiphon pisum Pea aphid  Apim\ACYPI001498   Bombyx mori Silkmoth  Bmor\BGIBMGA005939   Pediculus humanus Human body louse  Phum\PHUM150920   Tribolium castaneum Red flour beetle  Tcas\TC013408
Orthologs in non-Insect Arthropods (EOG6NP5KZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_300592   Ixodes scapularis Deer tick  Isca\ISCW024139
Orthologs in non-Arthropod Metazoa (EOG6ZD611)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\T10C6.5   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_024432gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004860gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004644gn   Danio rerio Zebrafish  Drer\DKEYP-20G2.7   Xenopus tropicalis Western clawed frog  Xtro\cwc15   Gallus gallus Domestic chicken  Ggal\CWC15   Mus musculus House mouse  Mmus\Cwc15   Rattus norvegicus Norway rat  Rnor\Cwc15   Rattus norvegicus Norway rat  Rnor\LOC310177   Homo sapiens Human  Hsap\CWC15
Human Orthologs (1)
Gene OMIM HGNC Hsap\CWC15
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD24660 Drosophila sechellia Dsec\GM22219 Drosophila erecta Dere\GG18981 Drosophila yakuba Dyak\GE15453 Drosophila ananassae Dana\GF21803 Drosophila pseudoobscura pseudoobscura Dpse\GA11429 Drosophila persimilis Dper\GL16509 Drosophila willistoni Dwil\GK25556 Drosophila virilis Dvir\GJ19417 Drosophila mojavensis Dmoj\GI14379 Drosophila grimshawi Dgri\GH12902
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
Bloomington	22042 w67c23 P{Mae-UAS.6.11}c12.1GG01819 34952 y1 sc* v1; P{TRiP.HMS00382}attP2/TM3, Sb1
VDRC	v103745 P{KK102389}VIE-260B v17032 w1118; P{GD7501}v17032
Genomic Clones ( 1 )
	BACR30C13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 59 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD46621
Other clones	DPiM_LD46621
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT24438 AT24485 GH19015 LD12963 LD15378 RE07974 RE08179 RE10786 RE16443 RE18994 RE22833 RE25945 RE31859 RE32654 RE33443 RE38788 RE39207 RE44934 RE47407 RE53411 RE54383 RE58185 RE67814 RH04882 RH26954 RH61336 SD19405
Other clones	9820 11639 17812 20977 70181 98350 149441 CK01.1B.C5 CK01.36A.A2 CK01.56C.G9 CK01.117C.D10 CK01793 Dmel_dig_001209_0703_0451 Dmel_dig_013255_0700_3058 Dmel_dig_015483_0600_0937 EK030725 EK045720 EK055602 EK065602 EK130228 EK173351 EK197355 RP001004371 RP001006231 RP001007207 RP001019513 RP001022683 RP001025366 RP001026663 RP001033182
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0040235 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 53435
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: c12.1 CG12135 (Bayraktaroglu, 2000.8.7)
Additional comments	"l(1)G0200" may affect "c12.1" or "c12.2". "l(1)G0249" may affect "c12.1" or "c12.2". "l(1)G0453" may affect "c12.1" or "c12.2". (Peter et al., 2002)
Other Comments
	RNAi screen using dsRNA made from templates generated with primers directed against this gene results in a long metaphase spindle with misaligned chromosomes when assayed in S2 cells. This phenotype can be observed when the screen is performed with or without Cdc27 dsRNA. (Goshima et al., 2007)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_144348 RefSeq (Proteins) • NP_652605 DDBJ / EMBL / GenBank • AA141465 AA141466 AA438645 AA440561 AAF35309 AAF46488 AAL39838 AF217651 AI388196 AI514972 AW943858 AY069693 Entrez Gene - A searchable database of RefSeq genes. • 53435 UniProtKB/Swiss-Prot • Q9V3B6
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pre-mRNA-splicing factor Cwf15/Cwc15 (IPR006973) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD46621
Linkouts
	BioGRID - A database of protein and genetic interactions • 72723 DPiM - DPiM, Drosophila Protein interaction Map • FBgn0040235 DroID - A comprehensive database of gene and protein interactions. • FBgn0040235 DRSC - Results from RNAi screens. • FBgn0040235 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040235 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12135-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0040235 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 53435 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 53435 modMine - Data generated by the modENCODE project. • FBgn0040235
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	c12.1 (Herold et al., 2009, Japanese National Institute of Genetics, 2012.5.21) C12.1 (Doroszuk et al., 2012) CG12135 (Jackson Behan et al., 2005, Goshima et al., 2007, Keleman et al., 2009.8.5, Herold et al., 2009, Ni et al., 2011.7.19) cwc15 (Goshima et al., 2007)
Name Synonym	c12.1
Secondary FlyBase IDs
	FBgn0030126
References ( 24 )
Generate a list of	All references relating to this gene ( 24 )
List References by type	Research paper  ( 3 ) Supplementary material  ( 7 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 2 ) Stock list  ( 2 ) DNA/RNA sequence record  ( 1 ) Website  ( 1 )
Recent research papers ( 1 )
	Doroszuk et al., 2012, BMC Genomics 13: 167 Transcriptome analysis of a long-lived natural Drosophila variant: a prominent role of stress- and reproduction-genes in lifespan extension. [FBrf0219259] Show all research papers ...