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Gene Dmel\CG12470

General Information
Symbol	Dmel\CG12470	Species	D. melanogaster
Name		Annotation symbol	CG12470
Feature type	protein_coding_gene	FlyBase ID	FBgn0040371
Gene Model Status	Current	Stock availability	1 publicly available
Also Known As	EG:BACR37P7.5
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	1A1-1A1	Sequence location	X:201,717..202,975 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG12470 (FBgn0040371). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. One allele is reported. The phenotype of this allele is annotated with: trichogen cell. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed during late pupal stages, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. Comments on Affy2 ProbeSet: ProbeSet 1627679_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG12470. Gene sequence location is X:201717..202975.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10	References FlyBase Curators, 2010-, Gene Ontology (GO) annotation review.
FB2012_01	Sequence features BKN23915 HFA18620
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 1A1-1A1   Limits computationally determined from genome sequence between P{EP}CG17896EP1320&P{EP}EP1398 and P{EP}svrEP356&P{EP}argEP452
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG12470 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG12470-RA FBtr0070069  NM_130482   1062   195
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG12470-PA   FBpp0070068   22.0   195   8.40     NP_569838   AAF45494
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014298 AAF45494   AI944428   AI944730   AI944972   AI945880   AI946328   AI946587   AI947070   AL050231 CAB43333   BE975526   BE975527   BE976691   BE977392   BE977492   BE977743   BE977947   BF487079   BT015302 AAT94530   CO184832
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9V3G9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 5 of adulthood & male -- day 7 of adulthood & male   spermatozoon   (Dorus et al., 2006, Wasbrough et al., 2010)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0040371    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0040371 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed during late pupal stages, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0040371 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2  (522) larva L3 puffstage 3-6  (1101) larva L3 puffstage 7-9  (1697) white prepupae new  (1553) white prepupae 12hr  (2547) white prepupae 24hr  (3453) pupae 2d postWPP  (4890) pupae 3d postWPP  (4934) pupae 4d postWPP  (3225) adult male 01day  (8326) adult male 05day  (8115) adult male 30day  (6726) adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9  (1697) white prepupae new  (1553) white prepupae 12hr  (2547) white prepupae 24hr  (3453) pupae 2d postWPP  (4890) pupae 3d postWPP  (4934) pupae 4d postWPP  (3225) adult male 01day  (8326) adult male 05day  (8115) adult male 30day  (6726) adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0040371 expression level Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2  (522) larva L3 puffstage 3-6  (1101) larva L3 puffstage 7-9  (1697) white prepupae new  (1553) white prepupae 12hr  (2547) white prepupae 24hr  (3453) pupae 2d postWPP  (4890) pupae 3d postWPP  (4934) pupae 4d postWPP  (3225) adult male 01day  (8326) adult male 05day  (8115) adult male 30day  (6726) adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9  1697 white prepupae new  1553 white prepupae 12hr  (2547) white prepupae 24hr  (3453) pupae 2d postWPP  (4890) pupae 3d postWPP  (4934) pupae 4d postWPP  (3225) adult male 01day  (8326) adult male 05day  (8115) adult male 30day  (6726) adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    1 embryo 02-04hr    1 embryo 04-06hr    4 embryo 06-08hr    8 embryo 08-10hr    11 embryo 10-12hr    10 embryo 12-14hr    11 embryo 14-16hr    5 embryo 16-18hr    19 embryo 18-20hr    3 embryo 20-22hr    8 embryo 22-24hr    6 larva L1    3 larva L2    4 larva L3 12hr old    19 larva L3 puffstage 1-2    522 larva L3 puffstage 3-6    1101 larva L3 puffstage 7-9    1697 white prepupae new    1553 white prepupae 12hr    2547 white prepupae 24hr    3453 pupae 2d postWPP    4890 pupae 3d postWPP    4934 pupae 4d postWPP    3225 adult male 01day    8326 adult male 05day    8115 adult male 30day    6726 adult female 01day    7 adult female 05day    1 adult female 30day    4 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0040371    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0040371 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult testis. Expression at moderate levels in the following post-embryonic organs or tissues: larval fat body. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0040371 expression level Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis    1958.6 Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis  (1958.6) Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis  (1958.6) Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis    1958.6 Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0040371 expression level Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis    1958.6 Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis  (1958.6) Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis  (1958.6) Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    2.95 Larval Midgut    1 Larval Hindgut    0.4 Larval Malpighian Tubules    1.4 Larval Fat Body    261 Larval Salivary Gland    0.6 Larval Trachea    8.15 Larval Carcass    1.55 Adult Head    5.5 Adult Eye    0.925 Adult Brain    5.5 Adult Thoracic-Abdominal Ganglion    5 Adult Crop    1.3 Adult Midgut    0.4 Adult Hindgut    0.7 Adult Malpighian Tubules    2.8 Adult Fat Body    0.8 Adult Salivary Gland    1.2 Adult Heart no informative data Adult VirginFemale Spermatheca    2.1 Adult InseminatedFemale Spermatheca    2.5 Adult Ovary    0.4 Adult Testis    1958.6 Adult Male Accessory Gland    5.1 Adult Carcass    5.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart no informative data Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    5.5   NA  Eye    0.925   NA  Brain    5.5   2.95  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    5   NA  Crop    1.3   1  Midgut    0.4   0.4  Hindgut    0.7   1.4  Malpighian Tubules    2.8   261  Fat Body    0.8   0.6  Salivary Gland    1.2   NA  Heart    no informative data   8.15  Trachea    NA   NA  VirginFemale Spermatheca    2.1   NA  InseminatedFemale Spermatheca    2.5   NA  Ovary    0.4   NA  Testis    1958.6   NA  Male Accessory Gland    5.1   1.55  Carcass    5.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040371 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12470-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG12470GD1589 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG12470GD1589 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 CG12470GD1589
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG12470 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG12470 Class Mutagen Stocks Known lesion CG12470GD1589 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD1589} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{GT1}CG3777BG00332 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
	There is no information supporting a biological process, cellular component or molecular function term for this gene. (Based on a review of available data on: 2010-11-18)
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG12470 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 57550 DroID - A comprehensive database of gene and protein interactions. • FBgn0040371 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 30977
Orthologs
Genome-wide drosophilid orthologs	Dana\GF21444 Dere\GG12777 Dgri\GH23248 Dmoj\GI14835 Dper\GL20370 Dpse\GA11651 Dsec\GM19054 Dsim\GD16498 Dvir\GJ19500 Dwil\GK24992 Dyak\GE16603
Curated drosophilid orthologs	Dpse\GA11651
Linkouts	OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0234111 FBgn0226951 FBgn0206643 FBgn0188108 FBgn0173957 FBgn0071701 FBgn0157965 FBgn0137586 FBgn0130705 FBgn0105061 FBgn0098446
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
VDRC	v3806 w1118; P{GD1589}v3806
Genomic Clones ( 1 )
	BACR13J02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 16 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT18705
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT21754
Other clones	bs01c08 bs04g02 bs07e10 bs17h08 bs23f08 bs28b06 bs34f11 bs43g04 bs54g01 bs63d03 bs64f09 bs68e03 bs71d01 EC28651
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0040371 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 30977
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG12470 NEST:bs07e10 (FlyBase, 1996-) Source for merge of: CG12470 NEST:bs17h08 (FlyBase, 1996-) Source for merge of: EG:BACR37P7.5 CG12470 (Bayraktaroglu, 2000.8.7)
Additional comments	Source for merge of CG12470 NEST:bs07e10 was sequence comparison (date:030908). (FlyBase, 1996-) Source for merge of CG12470 NEST:bs17h08 was sequence comparison (date:031024). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_130482 RefSeq (Proteins) • NP_569838 DDBJ / EMBL / GenBank • AAF45494 AAT94530 AI944428 AI944730 AI944972 AI945880 AI946328 AI946587 AI947070 AL050231 BT015302 CAB43333 Entrez Gene - A searchable database of RefSeq genes. • 30977 UniProtKB/TrEMBL • Q9V3G9
Other Crossreferences
Linkouts
	BioGRID - A database of protein and genetic interactions • 57550 DroID - A comprehensive database of gene and protein interactions. • FBgn0040371 DRSC - Results from RNAi screens. • FBgn0040371 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040371 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG12470-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0040371 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 30977 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 30977 modMine - Data generated by the modENCODE project. • FBgn0040371 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • FBgn0234111 FBgn0226951 FBgn0206643 FBgn0188108 FBgn0173957 FBgn0071701 FBgn0157965 FBgn0137586 FBgn0130705 FBgn0105061 FBgn0098446
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	CG12470 (Liu et al., 2005, Dorus et al., 2006, Sousa-Neves and Rosas, 2010, Wasbrough et al., 2010, Doggett et al., 2011) EG:BACR37P7.5 (Benos et al., 2001, Giot et al., 2003, Stuart et al., 2007) NEST:bs07e10   NEST:bs17h08
Name Synonym
Secondary FlyBase IDs
	FBgn0029520 FBgn0045261 FBgn0045377
References ( 18 )
Research paper	Doggett et al., 2011, Dev. Biol. 355(2): 381--393 Wake-up-call, a lin-52 paralogue, and Always early, a lin-9 homologue physically interact, but have opposing functions in regulating testis-specific gene expression. [FBrf0213964] Sousa-Neves and Rosas, 2010, PLoS ONE 5(5): e10485 An analysis of genetic changes during the divergence of Drosophila species. [FBrf0210766] Stuart et al., 2007, Nature 445(7123): 95--101 A systems biology analysis of the Drosophila phagosome. [FBrf0195342] Liu et al., 2005, Nature Genetics 37(12): 1361--1366 Sex-specific role of Drosophila melanogaster HP1 in regulating chromatin structure and gene transcription. [FBrf0191273] Benos et al., 2001, Genome Res. 11(5): 710--730 From First Base: the sequence of the tip of the X chromosome of Drosophila melanogaster, a comparison of two sequencing strategies. [FBrf0135823]
Supplementary material	Wasbrough et al., 2010, J. Proteomics 73(11): Supplemental Table 1. Mass spectrometry data. [FBrf0213252] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Dorus et al., 2006, Nat. Genet. 38(12): Supplementary Table 1. Genes encoding the Drosophila melanogaster sperm proteome. [FBrf0206129] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492] Bayraktaroglu, 2000.8.7, Matches of the nc3 class to CGs. Matches of the nc3 class to CGs. [FBrf0129568] Benos, 2000.12.13, FlyBase error report on Wed Dec 13 14:35:56 2000. FlyBase error report on Wed Dec 13 14:35:56 2000. [FBrf0133222]
FlyBase analysis	FlyBase Curators, 2010-, Gene Ontology (GO) annotation review. Gene Ontology (GO) annotation review. [FBrf0216433] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]