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Gene Dmel\CG9034

General Information
Symbol	Dmel\CG9034	Species	D. melanogaster
Name		Annotation symbol	CG9034
Feature type	protein_coding_gene	FlyBase ID	FBgn0040931
Gene Model Status	Current	Stock availability	5 publicly available
Genomic Location
Chromosome (arm)	X	Recombination map
Cytogenetic map	8C14-8C14	Sequence location	X:9,053,547..9,054,085 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG9034 (FBgn0040931). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. The phenotype of these alleles is annotated with: trichogen cell. It has 2 annotated transcripts and 2 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, larval fat body, larval trachea, adult female reproductive system, adult male reproductive system. Comments on Affy2 ProbeSet: ProbeSet 1625847_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG9034. Gene sequence location is X:9053547..9054085.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 8C14-8C14   Limits computationally determined from genome sequence between P{EP}EP1450&P{EP}EP1356 and P{EP}EP912EP912
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG9034 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.46 Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG9034-RA FBtr0071343  NM_144281   386   77 CG9034-RB FBtr0340342     481   77
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG9034-PA   FBpp0071278   8.4   77   8.89     NP_652538   AAF46455 CG9034-PB   FBpp0309301   8.4   77   8.89
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014298 AAF46455   AI389009   AY071733 AAL49355   BI615395   CO154978   CO270153   CO281584   CO294323   EC082703   EC084901   EC086885   EC266520
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W380
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, larval/adult midgut, larval/adult hindgut, adult heart, adult fat body, larval/adult salivary gland, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: adult crop, larval/adult Malpighian tubules, larval fat body, larval trachea, adult female reproductive system, adult male reproductive system. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  (550.025) Larval Midgut  (606) Larval Hindgut  (687.1) Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland  (691.1) Larval Trachea    433.15 Larval Carcass  (579.775) Adult Head  (725.8) Adult Eye  (976.65) Adult Brain  (649.2) Adult Thoracic-Abdominal Ganglion  (716.3) Adult Crop    481.7 Adult Midgut  (697.2) Adult Hindgut  (913.1) Adult Malpighian Tubules    409.3 Adult Fat Body  (921.4) Adult Salivary Gland  (974.7) Adult Heart  (775.725) Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass  (912.8) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System  550.025 Larval Midgut  606 Larval Hindgut  687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland  691.1 Larval Trachea    433.15 Larval Carcass  579.775 Adult Head  725.8 Adult Eye  (976.65) Adult Brain  649.2 Adult Thoracic-Abdominal Ganglion  716.3 Adult Crop    481.7 Adult Midgut  697.2 Adult Hindgut  (913.1) Adult Malpighian Tubules    409.3 Adult Fat Body  (921.4) Adult Salivary Gland  (974.7) Adult Heart  775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass  (912.8) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    550.025 Larval Midgut    606 Larval Hindgut    687.1 Larval Malpighian Tubules    405.8 Larval Fat Body    209.1 Larval Salivary Gland    691.1 Larval Trachea    433.15 Larval Carcass    579.775 Adult Head    725.8 Adult Eye    976.65 Adult Brain    649.2 Adult Thoracic-Abdominal Ganglion    716.3 Adult Crop    481.7 Adult Midgut    697.2 Adult Hindgut    913.1 Adult Malpighian Tubules    409.3 Adult Fat Body    921.4 Adult Salivary Gland    974.7 Adult Heart    775.725 Adult VirginFemale Spermatheca    248.8 Adult InseminatedFemale Spermatheca    231.8 Adult Ovary    286 Adult Testis    274.6 Adult Male Accessory Gland    397.4 Adult Carcass    912.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    725.8   NA  Eye    976.65   NA  Brain    649.2   550.025  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    716.3   NA  Crop    481.7   606  Midgut    697.2   687.1  Hindgut    913.1   405.8  Malpighian Tubules    409.3   209.1  Fat Body    921.4   691.1  Salivary Gland    974.7   NA  Heart    775.725   433.15  Trachea    NA   NA  VirginFemale Spermatheca    248.8   NA  InseminatedFemale Spermatheca    231.8   NA  Ovary    286   NA  Testis    274.6   NA  Male Accessory Gland    397.4   579.775  Carcass    912.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male  26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult  (38) digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult  (42) carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male  (52) accessory gland, mated 4-day male  (29) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male  26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult  (38) digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult  (42) carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male  (52) accessory gland, mated 4-day male  29 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    24 central nervous system, larvae L3    7 central nervous system, pupae P8    10 head, virgin 1-day female    21 head, virgin 4-day female    12 head, virgin 20-day female    24 head, mated 1-day female    10 head, mated 4-day female    8 head, mated 20-day female    14 head, mated 1-day male    26 head, mated 4-day male    18 head, mated 20-day male    20 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    3 digestive system, larvae L3 wandering    12 digestive system, 1-day adult    38 digestive system, 4-day adult    15 digestive system, 20-day adult    20 fat body, larvae L3 wandering    4 fat body, white prepupae    4 fat body, pupae P8    13 carcass, larvae L3 wandering    9 carcass, 1-day adult    42 carcass, 4-day adult    20 carcass, 20-day adult    22 ovary, virgin 4-day female    12 ovary, mated 4-day female    7 testis, mated 4-day male    52 accessory gland, mated 4-day male    29 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages, during late pupal stages, in stages of adults of both sexes. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr    106 embryo 20-22hr    128 embryo 22-24hr    100 larva L1    123 larva L2    148 larva L3 12hr old    120 larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP    136 pupae 4d postWPP    155 adult male 01day    170 adult male 05day    128 adult male 30day    76 adult female 01day    125 adult female 05day    69 adult female 30day    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (53) embryo 02-04hr  (69) embryo 04-06hr  (55) embryo 06-08hr  (43) embryo 08-10hr  (42) embryo 10-12hr  (87) embryo 12-14hr  (54) embryo 14-16hr  (64) embryo 16-18hr  (69) embryo 18-20hr  (106) embryo 20-22hr  (128) embryo 22-24hr  (100) larva L1  (123) larva L2  (148) larva L3 12hr old  (120) larva L3 puffstage 1-2  (65) larva L3 puffstage 3-6  (42) larva L3 puffstage 7-9  (31) white prepupae new  (31) white prepupae 12hr  (27) white prepupae 24hr  (29) pupae 2d postWPP  (64) pupae 3d postWPP  (136) pupae 4d postWPP  (155) adult male 01day  (170) adult male 05day  (128) adult male 30day  (76) adult female 01day  (125) adult female 05day  (69) adult female 30day  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr  106 embryo 20-22hr  (128) embryo 22-24hr    100 larva L1  (123) larva L2  (148) larva L3 12hr old  (120) larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP  (136) pupae 4d postWPP  (155) adult male 01day  (170) adult male 05day  (128) adult male 30day    76 adult female 01day  (125) adult female 05day    69 adult female 30day    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr    106 embryo 20-22hr    128 embryo 22-24hr    100 larva L1    123 larva L2    148 larva L3 12hr old    120 larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP    136 pupae 4d postWPP    155 adult male 01day    170 adult male 05day    128 adult male 30day    76 adult female 01day    125 adult female 05day    69 adult female 30day    55 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr    106 embryo 20-22hr    128 embryo 22-24hr    100 larva L1    123 larva L2    148 larva L3 12hr old    120 larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP    136 pupae 4d postWPP    155 adult male 01day    170 adult male 05day    128 adult male 30day    76 adult female 01day    125 adult female 05day    69 adult female 30day    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (53) embryo 02-04hr  (69) embryo 04-06hr  (55) embryo 06-08hr  (43) embryo 08-10hr  (42) embryo 10-12hr  (87) embryo 12-14hr  (54) embryo 14-16hr  (64) embryo 16-18hr  (69) embryo 18-20hr  (106) embryo 20-22hr  (128) embryo 22-24hr  (100) larva L1  (123) larva L2  (148) larva L3 12hr old  (120) larva L3 puffstage 1-2  (65) larva L3 puffstage 3-6  (42) larva L3 puffstage 7-9  31 white prepupae new  31 white prepupae 12hr  27 white prepupae 24hr  29 pupae 2d postWPP  (64) pupae 3d postWPP  (136) pupae 4d postWPP  (155) adult male 01day  (170) adult male 05day  (128) adult male 30day  (76) adult female 01day  (125) adult female 05day  (69) adult female 30day  (55) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr  106 embryo 20-22hr  128 embryo 22-24hr    100 larva L1  123 larva L2  (148) larva L3 12hr old  120 larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP  136 pupae 4d postWPP  (155) adult male 01day  (170) adult male 05day  128 adult male 30day    76 adult female 01day  125 adult female 05day    69 adult female 30day    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    53 embryo 02-04hr    69 embryo 04-06hr    55 embryo 06-08hr    43 embryo 08-10hr    42 embryo 10-12hr    87 embryo 12-14hr    54 embryo 14-16hr    64 embryo 16-18hr    69 embryo 18-20hr    106 embryo 20-22hr    128 embryo 22-24hr    100 larva L1    123 larva L2    148 larva L3 12hr old    120 larva L3 puffstage 1-2    65 larva L3 puffstage 3-6    42 larva L3 puffstage 7-9    31 white prepupae new    31 white prepupae 12hr    27 white prepupae 24hr    29 pupae 2d postWPP    64 pupae 3d postWPP    136 pupae 4d postWPP    155 adult male 01day    170 adult male 05day    128 adult male 30day    76 adult female 01day    125 adult female 05day    69 adult female 30day    55 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (35) Schneider line 2 Sg4  (48) embryonic 1182-4H    14 embryonic GM2  (39) embryonic Kc167    19 embryonic S1  (27) embryonic S3  (37) leg disc CME L1  26 wing disc CME-W2  (32) wing disc ML-DmD8  (31) wing disc ML-DmD9  (38) wing disc ML-DmD16-c3    22 wing disc ML-DmD21  (40) wing disc ML-DmD32    15 haltere disc ML-DmD17-c3  (31) eye-antennal disc ML-DmD11  (39) antennal disc ML-DmD20-c5  (44) mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1  (28) CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (35) Schneider line 2 Sg4  (48) embryonic 1182-4H    14 embryonic GM2  (39) embryonic Kc167    19 embryonic S1  27 embryonic S3  (37) leg disc CME L1  26 wing disc CME-W2  32 wing disc ML-DmD8  31 wing disc ML-DmD9  (38) wing disc ML-DmD16-c3    22 wing disc ML-DmD21  (40) wing disc ML-DmD32    15 haltere disc ML-DmD17-c3  31 eye-antennal disc ML-DmD11  (39) antennal disc ML-DmD20-c5  (44) mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1  28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    35 Schneider line 2 Sg4    48 embryonic 1182-4H    14 embryonic GM2    39 embryonic Kc167    19 embryonic S1    27 embryonic S3    37 leg disc CME L1    26 wing disc CME-W2    32 wing disc ML-DmD8    31 wing disc ML-DmD9    38 wing disc ML-DmD16-c3    22 wing disc ML-DmD21    40 wing disc ML-DmD32    15 haltere disc ML-DmD17-c3    31 eye-antennal disc ML-DmD11    39 antennal disc ML-DmD20-c5    44 mixed discs ML-DmD4-c1    20 CNS ML-DmBG1-c1    28 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    13 ovary fGS/OSS    10 ovary OSC    7 ovary OSS    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult  (32) Cadmium 50 mM 6 hrs, larvae L3  (62) Cadmium 50 mM 12 hrs, larvae L3  (28) Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3  (31) Ethanol 5% 3 hrs, larvae L3  (46) Ethanol 10% 3 hrs, larvae L3  (50) Caffeine 1.5 mg/ml 4 hrs, larvae L3  26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult  (27) Rotenone 2 μg 12 hrs, larvae L3  (46) Rotenone 8 μg 12 hrs, larvae L3  (79) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult  32 Cadmium 50 mM 6 hrs, larvae L3  (62) Cadmium 50 mM 12 hrs, larvae L3  28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3  31 Ethanol 5% 3 hrs, larvae L3  (46) Ethanol 10% 3 hrs, larvae L3  (50) Caffeine 1.5 mg/ml 4 hrs, larvae L3  26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult  27 Rotenone 2 μg 12 hrs, larvae L3  (46) Rotenone 8 μg 12 hrs, larvae L3  (79) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    8 cold shock, 4-day adult    7 heat shock, 4-day adult    32 Cadmium 50 mM 6 hrs, larvae L3    62 Cadmium 50 mM 12 hrs, larvae L3    28 Cadmium 50 mM 48 hrs, 4-day adult    20 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    11 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    16 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    31 Ethanol 5% 3 hrs, larvae L3    46 Ethanol 10% 3 hrs, larvae L3    50 Caffeine 1.5 mg/ml 4 hrs, larvae L3    26 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    15 Paraquat 10 mM 48 hrs, 4-day adult    27 Rotenone 2 μg 12 hrs, larvae L3    46 Rotenone 8 μg 12 hrs, larvae L3    79 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_15 mE1_20_mRNA_expression_cluster_02
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040931 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9034-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG9034GD4003 Other Phenotypes Allele visible, with Scer\GAL4pnr-MD237 CG9034GD4003 Phenotype manifest in Allele trichogen cell, with Scer\GAL4pnr-MD237 CG9034GD4003
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CG9034 Class Mutagen Stocks Known lesion CG9034G17283 P-element activity 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG9034 Class Mutagen Stocks Known lesion CG9034GD4003 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG9034HMS02537 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG9034KK109552 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD4003} NA P{KK109552} NA P{TRiP.HMS02537} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EP}CG9034G17283 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG9034 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0040931
Orthologs
OrthoDB Orthologs (18) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG62FT4D Dipteran inclusive ortholog search EOG6G7C80 Insect inclusive ortholog search EOG65DVMH Arthropod inclusive ortholog search EOG698SHV Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG62FT4D)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG9034     Drosophila simulans   Dsim\GD16080 Y   Drosophila sechellia   Dsec\GM13674 Y   Drosophila erecta   Dere\GG18998 Y   Drosophila yakuba   Dyak\GE17410 Y   Drosophila ananassae   Dana\GF19215 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA21494 Y   Drosophila persimilis   Dper\GL26829 Y   Drosophila willistoni   Dwil\GK25215 Y   Drosophila virilis   Dvir\GJ19260 Y   Drosophila mojavensis   Dmoj\GI15501 Y   Drosophila grimshawi   Dgri\GH17746 Y
Orthologs in non-Drosophila Dipterans (EOG6G7C80)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL000458   Anopheles gambiae Malaria mosquito  Agam\AGAP003864   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ002843
Orthologs in non-Dipteran Insects (EOG65DVMH)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008487   Bombyx mori Silkmoth  Bmor\BGIBMGA003422
Orthologs in non-Insect Arthropods (EOG698SHV)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Ixodes scapularis Deer tick  Isca\ISCW021921
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD16080 Drosophila sechellia Dsec\GM13674 Drosophila erecta Dere\GG18998 Drosophila yakuba Dyak\GE17410 Drosophila ananassae Dana\GF19215 Drosophila pseudoobscura pseudoobscura Dpse\GA21494 Drosophila persimilis Dper\GL26829 Drosophila willistoni Dwil\GK25215 Drosophila virilis Dvir\GJ19260 Drosophila mojavensis Dmoj\GI15501 Drosophila grimshawi Dgri\GH17746
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	26632 w* P{EP}CG9034G17283/FM6, w* 42845 y1 sc* v1; P{TRiP.HMS02537}attP40
VDRC	v101777 P{KK109552}VIE-260B v30419 w1118; P{GD4003}v30419 v30420 w1118; P{GD4003}v30420
Genomic Clones ( 1 )
	BACR39L04 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 10 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH45008
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH20078
Other clones	42850 76519 524304 CK01.127C.H3 EK097723 EK157553 EK206552 EN05133
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0040931 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 50405
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG9034 BcDNA:RH45008 (FlyBase, 1996-)
Additional comments	Source for merge of CG9034 BcDNA:RH45008 was TrEMBL update (date:020807). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_144281 RefSeq (Proteins) • NP_652538 DDBJ / EMBL / GenBank • AAF46455 AAL49355 AI389009 AY071733 BI615395 Entrez Gene - A searchable database of RefSeq genes. • 50405 UniProtKB/TrEMBL • Q9W380
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0040931 DRSC - Results from RNAi screens. • FBgn0040931 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0040931 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG9034-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0040931 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 50405 modMine - Data generated by the modENCODE project. • FBgn0040931
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	BcDNA:RH45008   CG9034 (Keleman et al., 2009.8.5, Kim et al., 2010, Cammarato et al., 2011, Ni et al., 2010.12.1) GH20078 (Page et al., 2000)
Name Synonym
Secondary FlyBase IDs
	FBgn0047012
References ( 13 )
Research paper	Kim et al., 2010, Exp. Gerontol. 45(7-8): 611--620 Gene expression profiling implicates OXPHOS complexes in lifespan extension of flies over-expressing a small mitochondrial chaperone, Hsp22. [FBrf0210880] Glasscock et al., 2005, Genetics 170(4): 1677--1689 The mei-P26 Gene Encodes a RING Finger B-box Coiled-Coil-NHL Protein That Regulates Seizure Susceptibility in Drosophilia. [FBrf0187640] Page et al., 2000, Genetics 155(4): 1757--1772 Genetic studies of mei-P26 reveal a link between the processes that control germ cell proliferation in both sexes and those that control meiotic exchange in Drosophila. [FBrf0130005]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Ni et al., 2010.12.1, A genome-scale shRNA resource for transgenic RNAi in Drosophila. A genome-scale shRNA resource for transgenic RNAi in Drosophila. [FBrf0212437] Bellen, 2009.2.6, BDGP_2009_0206.GenExel.xml BDGP_2009_0206.GenExel.xml [FBrf0206623] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]