A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\scyl

General Information
SymbolDmel\scylSpeciesD. melanogaster
NamescyllaAnnotation symbolCG7590
Feature typeprotein_coding_geneFlyBase IDFBgn0041094
Gene Model StatusCurrent Stock availability 10 publicly available
Genomic Location
Chromosome (arm)3LRecombination map
Cytogenetic map68B4-68C1Sequence location3L:11,245,410..11,248,343 [+]

Genomic Maps

GBrowse View Help
modENCODE GBrowse
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene scylla is referred to in FlyBase by the symbol Dmel\scyl (CG7590, FBgn0041094). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: negative regulation of growth; response to DNA damage stimulus; head involution; cell death. 18 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: RTP801, C-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period. Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval trachea, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult midgut, adult Malpighian tubules, adult fat body, larval/adult salivary gland, adult ovary, adult testis, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1627101_at partially aligns to an exonic region of the only FlyBase-annotated transcript isoform of scyl: 8 out of 14 probes fall into this exonic region. Gene sequence location is 3L:11245410..11248343.

External Summaries
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2012_01
Sequence features
FB2011_10
References
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
68B4-68C1  
Limits computationally determined from genome sequence between P{PZ}l(3)0123901239&P{lacW}l(3)01239j9B4 and P{PZ}CycA02461&P{PZ}CycA03946  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
68C-68C  
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\scyl for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0076168 FBpp0075899 FBti0036118 FBti0018094 FBti0111352 FBti0039920 FBti0029816 FBti0111812 FBti0114852 FBti0048288 FBti0048357 FBti0033528 FBti0114869 FBti0050953 FBti0065463 FBti0045730 FBti0065940 FBti0104946 FBti0143094
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0076168
  2192
  280
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0075899  
30.8  
280  
9.57  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
RTP801, C-terminal (IPR012918)
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view scyl-RA
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0041094


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0041094
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, at stages throughout the pupal period.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0041094 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 10309
embryo 02-04hr
 
 12596
embryo 04-06hr
 
 12237
embryo 06-08hr
 
 13072
embryo 08-10hr
 
 11826
embryo 10-12hr
 
 10295
embryo 12-14hr
 
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 
 11488
embryo 18-20hr
 
 10941
embryo 20-22hr
 
 11660
embryo 22-24hr
 
 12887
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 
 11027
white prepupae new
 
 13988
white prepupae 12hr
 
 18143
white prepupae 24hr
 
 13568
pupae 2d postWPP
 
 12362
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10309)
embryo 02-04hr
 (12596)
embryo 04-06hr
 (12237)
embryo 06-08hr
 (13072)
embryo 08-10hr
 (11826)
embryo 10-12hr
 (10295)
embryo 12-14hr
 (10500)
embryo 14-16hr
 (9233)
embryo 16-18hr
 (11488)
embryo 18-20hr
 (10941)
embryo 20-22hr
 (11660)
embryo 22-24hr
 (12887)
larva L1
 (7589)
larva L2
 (3232)
larva L3 12hr old
 (3942)
larva L3 puffstage 1-2
 (2462)
larva L3 puffstage 3-6
 (6066)
larva L3 puffstage 7-9
 (11027)
white prepupae new
 (13988)
white prepupae 12hr
 (18143)
white prepupae 24hr
 (13568)
pupae 2d postWPP
 (12362)
pupae 3d postWPP
 (4689)
pupae 4d postWPP
 (8394)
adult male 01day
 (5415)
adult male 05day
 (5598)
adult male 30day
 (5327)
adult female 01day
 (6266)
adult female 05day
 (6479)
adult female 30day
 (6621)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10309)
embryo 02-04hr
 (12596)
embryo 04-06hr
 (12237)
embryo 06-08hr
 (13072)
embryo 08-10hr
 (11826)
embryo 10-12hr
 (10295)
embryo 12-14hr
 (10500)
embryo 14-16hr
 (9233)
embryo 16-18hr
 (11488)
embryo 18-20hr
 (10941)
embryo 20-22hr
 (11660)
embryo 22-24hr
 (12887)
larva L1
 (7589)
larva L2
 (3232)
larva L3 12hr old
 (3942)
larva L3 puffstage 1-2
 (2462)
larva L3 puffstage 3-6
 (6066)
larva L3 puffstage 7-9
 (11027)
white prepupae new
 (13988)
white prepupae 12hr
 (18143)
white prepupae 24hr
 (13568)
pupae 2d postWPP
 (12362)
pupae 3d postWPP
 (4689)
pupae 4d postWPP
 (8394)
adult male 01day
 (5415)
adult male 05day
 (5598)
adult male 30day
 (5327)
adult female 01day
 (6266)
adult female 05day
 (6479)
adult female 30day
 (6621)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 10309
embryo 02-04hr
 (12596)
embryo 04-06hr
 (12237)
embryo 06-08hr
 (13072)
embryo 08-10hr
 (11826)
embryo 10-12hr
 10295
embryo 12-14hr
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 (11488)
embryo 18-20hr
 (10941)
embryo 20-22hr
 (11660)
embryo 22-24hr
 (12887)
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 (11027)
white prepupae new
 (13988)
white prepupae 12hr
 (18143)
white prepupae 24hr
 (13568)
pupae 2d postWPP
 (12362)
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 10309
embryo 02-04hr
 
 12596
embryo 04-06hr
 
 12237
embryo 06-08hr
 
 13072
embryo 08-10hr
 
 11826
embryo 10-12hr
 
 10295
embryo 12-14hr
 
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 
 11488
embryo 18-20hr
 
 10941
embryo 20-22hr
 
 11660
embryo 22-24hr
 
 12887
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 
 11027
white prepupae new
 
 13988
white prepupae 12hr
 
 18143
white prepupae 24hr
 
 13568
pupae 2d postWPP
 
 12362
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0041094 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 10309
embryo 02-04hr
 
 12596
embryo 04-06hr
 
 12237
embryo 06-08hr
 
 13072
embryo 08-10hr
 
 11826
embryo 10-12hr
 
 10295
embryo 12-14hr
 
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 
 11488
embryo 18-20hr
 
 10941
embryo 20-22hr
 
 11660
embryo 22-24hr
 
 12887
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 
 11027
white prepupae new
 
 13988
white prepupae 12hr
 
 18143
white prepupae 24hr
 
 13568
pupae 2d postWPP
 
 12362
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10309)
embryo 02-04hr
 (12596)
embryo 04-06hr
 (12237)
embryo 06-08hr
 (13072)
embryo 08-10hr
 (11826)
embryo 10-12hr
 (10295)
embryo 12-14hr
 (10500)
embryo 14-16hr
 (9233)
embryo 16-18hr
 (11488)
embryo 18-20hr
 (10941)
embryo 20-22hr
 (11660)
embryo 22-24hr
 (12887)
larva L1
 (7589)
larva L2
 (3232)
larva L3 12hr old
 (3942)
larva L3 puffstage 1-2
 (2462)
larva L3 puffstage 3-6
 (6066)
larva L3 puffstage 7-9
 (11027)
white prepupae new
 (13988)
white prepupae 12hr
 (18143)
white prepupae 24hr
 (13568)
pupae 2d postWPP
 (12362)
pupae 3d postWPP
 (4689)
pupae 4d postWPP
 (8394)
adult male 01day
 (5415)
adult male 05day
 (5598)
adult male 30day
 (5327)
adult female 01day
 (6266)
adult female 05day
 (6479)
adult female 30day
 (6621)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (10309)
embryo 02-04hr
 (12596)
embryo 04-06hr
 (12237)
embryo 06-08hr
 (13072)
embryo 08-10hr
 (11826)
embryo 10-12hr
 (10295)
embryo 12-14hr
 (10500)
embryo 14-16hr
 (9233)
embryo 16-18hr
 (11488)
embryo 18-20hr
 (10941)
embryo 20-22hr
 (11660)
embryo 22-24hr
 (12887)
larva L1
 (7589)
larva L2
 (3232)
larva L3 12hr old
 (3942)
larva L3 puffstage 1-2
 2462
larva L3 puffstage 3-6
 (6066)
larva L3 puffstage 7-9
 (11027)
white prepupae new
 (13988)
white prepupae 12hr
 (18143)
white prepupae 24hr
 (13568)
pupae 2d postWPP
 (12362)
pupae 3d postWPP
 (4689)
pupae 4d postWPP
 (8394)
adult male 01day
 (5415)
adult male 05day
 (5598)
adult male 30day
 (5327)
adult female 01day
 (6266)
adult female 05day
 (6479)
adult female 30day
 (6621)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 10309
embryo 02-04hr
 12596
embryo 04-06hr
 12237
embryo 06-08hr
 13072
embryo 08-10hr
 11826
embryo 10-12hr
 10295
embryo 12-14hr
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 11488
embryo 18-20hr
 10941
embryo 20-22hr
 11660
embryo 22-24hr
 12887
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 11027
white prepupae new
 13988
white prepupae 12hr
 18143
white prepupae 24hr
 13568
pupae 2d postWPP
 12362
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 10309
embryo 02-04hr
 
 12596
embryo 04-06hr
 
 12237
embryo 06-08hr
 
 13072
embryo 08-10hr
 
 11826
embryo 10-12hr
 
 10295
embryo 12-14hr
 
 10500
embryo 14-16hr
 
 9233
embryo 16-18hr
 
 11488
embryo 18-20hr
 
 10941
embryo 20-22hr
 
 11660
embryo 22-24hr
 
 12887
larva L1
 
 7589
larva L2
 
 3232
larva L3 12hr old
 
 3942
larva L3 puffstage 1-2
 
 2462
larva L3 puffstage 3-6
 
 6066
larva L3 puffstage 7-9
 
 11027
white prepupae new
 
 13988
white prepupae 12hr
 
 18143
white prepupae 24hr
 
 13568
pupae 2d postWPP
 
 12362
pupae 3d postWPP
 
 4689
pupae 4d postWPP
 
 8394
adult male 01day
 
 5415
adult male 05day
 
 5598
adult male 30day
 
 5327
adult female 01day
 
 6266
adult female 05day
 
 6479
adult female 30day
 
 6621
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0041094


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0041094
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: Nearly all larval and adult organs/tissues expressed at moderate or high levels. Expression at high levels in the following post-embryonic organs or tissues: larval central nervous system, adult crop, larval/adult hindgut, larval Malpighian tubules, adult heart, larval trachea, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, larval/adult midgut, adult Malpighian tubules, adult fat body, larval/adult salivary gland, adult ovary, adult testis, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0041094 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 
 1147.2
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 
 1183.325
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 
 1244.675
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 508
Larval Midgut
 
 270.1
Larval Hindgut
 (567.6)
Larval Malpighian Tubules
 (1147.2)
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 (1183.325)
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 (720.3)
Adult Midgut
 
 476.4
Adult Hindgut
 (647.8)
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 (1244.675)
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 (948.9)
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 (1147.2)
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 (1183.325)
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 (1244.675)
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 
 1147.2
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 
 1183.325
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 
 1244.675
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0041094 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 
 1147.2
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 
 1183.325
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 
 1244.675
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 508
Larval Midgut
 
 270.1
Larval Hindgut
 567.6
Larval Malpighian Tubules
 (1147.2)
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 (1183.325)
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 (1244.675)
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 (948.9)
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 1147.2
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 1183.325
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 1244.675
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 508
Larval Midgut
 
 270.1
Larval Hindgut
 
 567.6
Larval Malpighian Tubules
 
 1147.2
Larval Fat Body
 
 58.2
Larval Salivary Gland
 
 275.6
Larval Trachea
 
 1183.325
Larval Carcass
 
 185.025
Adult Head
 
 321.8
Adult Eye
 
 371.75
Adult Brain
 
 442.4
Adult Thoracic-Abdominal Ganglion
 
 427.8
Adult Crop
 
 720.3
Adult Midgut
 
 476.4
Adult Hindgut
 
 647.8
Adult Malpighian Tubules
 
 127.1
Adult Fat Body
 
 326.5
Adult Salivary Gland
 
 118.4
Adult Heart
 
 1244.675
Adult VirginFemale Spermatheca
 
 53.4
Adult InseminatedFemale Spermatheca
 
 60.8
Adult Ovary
 
 367
Adult Testis
 
 104.4
Adult Male Accessory Gland
 
 948.9
Adult Carcass
 
 373.9
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 321.8
 
NA 
Eye
 
 371.75
 
NA 
Brain
 
 442.4
 
508 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 427.8
 
NA 
Crop
 
 720.3
 
270.1 
Midgut
 
 476.4
 
567.6 
Hindgut
 
 647.8
 
1147.2 
Malpighian Tubules
 
 127.1
 
58.2 
Fat Body
 
 326.5
 
275.6 
Salivary Gland
 
 118.4
 
NA 
Heart
 
 1244.675
 
1183.325 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 53.4
 
NA 
InseminatedFemale Spermatheca
 
 60.8
 
NA 
Ovary
 
 367
 
NA 
Testis
 
 104.4
 
NA 
Male Accessory Gland
 
 948.9
 
185.025 
Carcass
 
 373.9

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 14 )
For All Classical Alleles Show

Allele of scylClassMutagenStocksKnown lesion
scylZCL06112 --
scylc06271
1 --
scyle03543
1 --
scylf029931 --
scylG193181 --
scylMI02637
1 --
scylNP0206
1 --
scyl1130 Yes
scyl310 Yes
scylc03518
0 --
scylc055250 --
scylEP22.1
0 Yes
scylEP9.85
0 Yes
scylunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show

Allele of scylClassMutagenStocksKnown lesion
scylGD99252 Yes
scylGD165040 Yes
scylScer\UAS.cRa0 Yes
scylΔ1-12.Scer\UAS0 Yes
hide Aneuploid Aberrations
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of mobile activating element
insertion of enhancer trap binary system
hide Gene Ontology: Function, Process & Cellular Component ( 6 unique terms )

There is no information supporting a molecular function term for this gene.

(Based on a review of available data on: 2007-10-12)

hide Terms Based on Experimental Evidence ( 4 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from genetic interaction with chrb
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from electronic annotation with InterPro:IPR012918
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
Protein-protein
Interacting group
Assay
References
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
scyl allele
Gene
References
hide External Data
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 10 )
Bloomington
Harvard
Kyoto
VDRC
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 158 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: scyl anon-WO0118547.215
Source for merge of: scylla CG7590
Additional comments
Source for merge of scyl anon-WO0118547.215 was sequence comparison (date:051113).
hide Other Comments
scyl functions redundantly to chrb and is a downstream target of homeobox regulation.
Embryos injected with dsRNA made from templates generated with primers directed against this gene show no observable phenotype. However, embryos injected with dsRNA against both this gene and chrb are embryonic lethal and show defects in head involution.
Area matching Drosophila ESTs AA950084 and AA978669.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
RTP801, C-terminal (IPR012918)
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 7 )
Reported As
Symbol Synonym
anon-WO0118547.215
 
Name Synonym
Secondary FlyBase IDs
  • FBgn0036151
  • FBgn0062166
hide References ( 40 )
Generate a list of
List References by type
hide Recent research papers ( 4 )
Dottorini et al., 2011, BMC Bioinformatics 12: 34
Gepoclu: a software tool for identifying and analyzing gene positional clusters in large-scale gene expression analysis. [FBrf0214379]
Truscott et al., 2011, Genes Dev. 25(17): 1820--1834
mir-11 limits the proapoptotic function of its host gene, dE2f1. [FBrf0215211]
Blanco et al., 2010, BMC Dev. Biol. 10: 94
Gene expression following induction of regeneration in Drosophila wing imaginal discs. Expression profile of regenerating wing discs. [FBrf0211812]
Foley et al., 2010, Biol. Letts 6(1): 102--105
Does segregating variation in sexual or microhabitat preferences lead to non-random mating within a population of Drosophila melanogaster? [FBrf0209672]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2010