A Database of Drosophila Genes & Genomes

FB2012_01, released January 20th, 2012
 

Gene Dmel\ago

General Information
SymbolDmel\agoSpeciesD. melanogaster
NamearchipelagoAnnotation symbolCG15010
Feature typeprotein_coding_geneFlyBase IDFBgn0041171
Gene Model StatusCurrent Stock availability 9 publicly available
Genomic Location
Chromosome (arm)3LRecombination map3-
Cytogenetic map64A11-64A12Sequence location3L:4,246,326..4,254,309 [-]

Genomic Maps

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Automatically generated summary

See sections below for more information
The gene archipelago is referred to in FlyBase by the symbol Dmel\ago (CG15010, FBgn0041171). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ubiquitin-protein ligase activity. There is experimental evidence that it is involved in the biological process: negative regulation of growth; negative regulation of glial cell proliferation; axon guidance; regulation of mitosis; DNA endoreduplication. 42 alleles are reported. No phenotypic data is available. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: F-box domain, Skp2-like; F-box domain, cyclin-like; G-protein beta WD-40 repeat; WD40 repeat; WD40 repeat 2; WD40 repeat, conserved site; WD40 repeat, subgroup; WD40 repeat-like-containing domain; WD40-repeat-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633515_s_at completely aligns to an exonic region common to each of the 3 FlyBase-annotated transcript isoforms of ago. Gene sequence location is 3L:4246326..4254309.

External Summaries
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Description
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This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
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FB2012_01
Sequence features
FB2011_10
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
64A11-64A12  
Limits computationally determined from genome sequence between P{PZ}l(3)rG166rG166 and P{PZ}sinu06524  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\ago for information on other features
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0073227 FBtr0073247 FBtr0073246 FBtr0073245 FBtr0073228 FBtr0073244 FBpp0073083 FBpp0073103 FBpp0073101 FBpp0073102 FBpp0073084 FBpp0073100 FBti0125512 FBti0070125 FBti0069385 FBti0070382 FBti0057031 FBti0070484 FBti0070577 FBti0056850 FBti0070059 FBti0070692 FBti0057352 FBti0069035 FBti0070144 FBti0033986 FBti0069552 FBti0070672 FBti0070132 FBti0040081 FBti0059407 FBti0007921 FBti0114383 FBti0115158 FBti0105787
Comments on Gene Model
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0073247
  5308
  1326
FBtr0073246
  5285
  1326
FBtr0073245
  5352
  1326
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
ago-PA  
FBpp0073103  
141.4  
1326  
4.90  
ago-PB  
FBpp0073102  
141.4  
1326  
4.90  
ago-PC  
FBpp0073101  
141.4  
1326  
4.90  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hidePolypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
hide High-Throughput Expression Data
or
Untitled Document detailed view pav-RA ago-RA ago-RB ago-RC CG1265-RB
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.

modENCODE Temporal Expression Data for FBgn0041171


   Styles
Linear
Logarithmic
Heatmap
   Scales
max expr for FBgn0041171
Very low expression bin max
Moderate expression bin max
High expression bin max
Extremely high expression bin max

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No expression (0 - 0)
 
Extremely low expression (1 - 10)
 
Very low expression (11 - 100)
 
Low expression (101 - 400)
 
Moderate expression (401 - 1400)
 
Moderately high expression (1401 - 4000)
 
High expression (4001 - 10000)
 
Very high expression (10001 - 100000)
 
Extremely high expression (100001 - 2000000)

Linear, scaled to maximum FBgn0041171 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 12153
embryo 02-04hr
 
 17358
embryo 04-06hr
 
 17999
embryo 06-08hr
 
 15216
embryo 08-10hr
 
 11632
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (12153)
embryo 02-04hr
 (17358)
embryo 04-06hr
 (17999)
embryo 06-08hr
 (15216)
embryo 08-10hr
 (11632)
embryo 10-12hr
 (7933)
embryo 12-14hr
 (5246)
embryo 14-16hr
 (5982)
embryo 16-18hr
 (4310)
embryo 18-20hr
 (2643)
embryo 20-22hr
 (4597)
embryo 22-24hr
 (3988)
larva L1
 (1467)
larva L2
 (905)
larva L3 12hr old
 (818)
larva L3 puffstage 1-2
 (890)
larva L3 puffstage 3-6
 (1912)
larva L3 puffstage 7-9
 (2394)
white prepupae new
 (3063)
white prepupae 12hr
 (3368)
white prepupae 24hr
 (3900)
pupae 2d postWPP
 (2407)
pupae 3d postWPP
 (1357)
pupae 4d postWPP
 (1346)
adult male 01day
 (1545)
adult male 05day
 (1910)
adult male 30day
 (1789)
adult female 01day
 (3872)
adult female 05day
 (5892)
adult female 30day
 (6040)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (12153)
embryo 02-04hr
 (17358)
embryo 04-06hr
 (17999)
embryo 06-08hr
 (15216)
embryo 08-10hr
 (11632)
embryo 10-12hr
 (7933)
embryo 12-14hr
 (5246)
embryo 14-16hr
 (5982)
embryo 16-18hr
 (4310)
embryo 18-20hr
 (2643)
embryo 20-22hr
 (4597)
embryo 22-24hr
 (3988)
larva L1
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 (1912)
larva L3 puffstage 7-9
 (2394)
white prepupae new
 (3063)
white prepupae 12hr
 (3368)
white prepupae 24hr
 (3900)
pupae 2d postWPP
 (2407)
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 (1545)
adult male 05day
 (1910)
adult male 30day
 (1789)
adult female 01day
 (3872)
adult female 05day
 (5892)
adult female 30day
 (6040)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 (12153)
embryo 02-04hr
 (17358)
embryo 04-06hr
 (17999)
embryo 06-08hr
 (15216)
embryo 08-10hr
 (11632)
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 12153
embryo 02-04hr
 
 17358
embryo 04-06hr
 
 17999
embryo 06-08hr
 
 15216
embryo 08-10hr
 
 11632
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
log, scaled to maximum FBgn0041171 expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 12153
embryo 02-04hr
 
 17358
embryo 04-06hr
 
 17999
embryo 06-08hr
 
 15216
embryo 08-10hr
 
 11632
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Very low expression
Developmental Stage   Expression Level
embryo 00-02hr
 (12153)
embryo 02-04hr
 (17358)
embryo 04-06hr
 (17999)
embryo 06-08hr
 (15216)
embryo 08-10hr
 (11632)
embryo 10-12hr
 (7933)
embryo 12-14hr
 (5246)
embryo 14-16hr
 (5982)
embryo 16-18hr
 (4310)
embryo 18-20hr
 (2643)
embryo 20-22hr
 (4597)
embryo 22-24hr
 (3988)
larva L1
 (1467)
larva L2
 (905)
larva L3 12hr old
 (818)
larva L3 puffstage 1-2
 (890)
larva L3 puffstage 3-6
 (1912)
larva L3 puffstage 7-9
 (2394)
white prepupae new
 (3063)
white prepupae 12hr
 (3368)
white prepupae 24hr
 (3900)
pupae 2d postWPP
 (2407)
pupae 3d postWPP
 (1357)
pupae 4d postWPP
 (1346)
adult male 01day
 (1545)
adult male 05day
 (1910)
adult male 30day
 (1789)
adult female 01day
 (3872)
adult female 05day
 (5892)
adult female 30day
 (6040)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (12153)
embryo 02-04hr
 (17358)
embryo 04-06hr
 (17999)
embryo 06-08hr
 (15216)
embryo 08-10hr
 (11632)
embryo 10-12hr
 (7933)
embryo 12-14hr
 (5246)
embryo 14-16hr
 (5982)
embryo 16-18hr
 (4310)
embryo 18-20hr
 (2643)
embryo 20-22hr
 (4597)
embryo 22-24hr
 (3988)
larva L1
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 1912
larva L3 puffstage 7-9
 2394
white prepupae new
 (3063)
white prepupae 12hr
 (3368)
white prepupae 24hr
 (3900)
pupae 2d postWPP
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 1545
adult male 05day
 1910
adult male 30day
 1789
adult female 01day
 (3872)
adult female 05day
 (5892)
adult female 30day
 (6040)
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 12153
embryo 02-04hr
 17358
embryo 04-06hr
 17999
embryo 06-08hr
 15216
embryo 08-10hr
 11632
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 12153
embryo 02-04hr
 
 17358
embryo 04-06hr
 
 17999
embryo 06-08hr
 
 15216
embryo 08-10hr
 
 11632
embryo 10-12hr
 
 7933
embryo 12-14hr
 
 5246
embryo 14-16hr
 
 5982
embryo 16-18hr
 
 4310
embryo 18-20hr
 
 2643
embryo 20-22hr
 
 4597
embryo 22-24hr
 
 3988
larva L1
 
 1467
larva L2
 
 905
larva L3 12hr old
 
 818
larva L3 puffstage 1-2
 
 890
larva L3 puffstage 3-6
 
 1912
larva L3 puffstage 7-9
 
 2394
white prepupae new
 
 3063
white prepupae 12hr
 
 3368
white prepupae 24hr
 
 3900
pupae 2d postWPP
 
 2407
pupae 3d postWPP
 
 1357
pupae 4d postWPP
 
 1346
adult male 01day
 
 1545
adult male 05day
 
 1910
adult male 30day
 
 1789
adult female 01day
 
 3872
adult female 05day
 
 5892
adult female 30day
 
 6040
Expression Level Scale
 None 
 Extremely low 
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

FlyAtlas Anatomical Expression Data for FBgn0041171


   Styles
Linear
Logarithmic
Heatmap
Back-to-back
   Scales
max expr for FBgn0041171
Moderate expression bin max
High level expression bin max
Very high expression bin max

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: larval salivary gland. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (1000 - 25000)

Linear, scaled to maximum FBgn0041171 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 (550.4)
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to maximum FBgn0041171 expression level
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 409.225
Larval Midgut
 
 171.9
Larval Hindgut
 
 217.1
Larval Malpighian Tubules
 
 292.4
Larval Fat Body
 
 379.5
Larval Salivary Gland
 
 550.4
Larval Trachea
 
 269.875
Larval Carcass
 
 300.325
Adult Head
 
 153.2
Adult Eye
 
 225.65
Adult Brain
 
 239.7
Adult Thoracic-Abdominal Ganglion
 
 219.8
Adult Crop
 
 211.8
Adult Midgut
 
 180.3
Adult Hindgut
 
 176.2
Adult Malpighian Tubules
 
 279.5
Adult Fat Body
 
 207
Adult Salivary Gland
 
 221.6
Adult Heart
 
 186.375
Adult VirginFemale Spermatheca
 
 407.5
Adult InseminatedFemale Spermatheca
 
 459.9
Adult Ovary
 
 490.3
Adult Testis
 
 334.1
Adult Male Accessory Gland
 
 126.6
Adult Carcass
 
 135.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 153.2
 
NA 
Eye
 
 225.65
 
NA 
Brain
 
 239.7
 
409.225 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 219.8
 
NA 
Crop
 
 211.8
 
171.9 
Midgut
 
 180.3
 
217.1 
Hindgut
 
 176.2
 
292.4 
Malpighian Tubules
 
 279.5
 
379.5 
Fat Body
 
 207
 
550.4 
Salivary Gland
 
 221.6
 
NA 
Heart
 
 186.375
 
269.875 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 407.5
 
NA 
InseminatedFemale Spermatheca
 
 459.9
 
NA 
Ovary
 
 490.3
 
NA 
Testis
 
 334.1
 
NA 
Male Accessory Gland
 
 126.6
 
300.325 
Carcass
 
 135.8

modENCODE Temporal Expression Data (Graveley et al., 2011)
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
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Allele
Phenotype manifest in
Allele
follicle cell & nucleus | somatic clone
nurse cell & nucleus | germ-line clone
hide Classical Alleles ( 24 )
For All Classical Alleles Show

Allele of agoClassMutagenStocksKnown lesion
ago5-HA-2760
1 --
agod09378
1 --
agod101451 --
agod11744
1 --
agoEP11351 --
agoEY010921 --
agoNP0850
1 --
ago10 Yes
ago30 Yes
ago40 Yes
agod04399
0 --
agod05878
0 --
agod066410 --
agod08894
0 --
agod09187
0 --
agod092260 --
agod092590 --
agod10246
0 --
agod10735
0 --
agod111710 --
agod115010 --
agod115720 --
agoF3870 Yes
agounspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 18 )
For All Alleles Carried on Transgenic Constructs Show

Allele of agoClassMutagenStocksKnown lesion
agoHM040051 Yes
agoHMS001111 Yes
ago1.IE1.T:Sjap\GST0 Yes
ago1.MtnA.T:Ivir\HA10 Yes
ago3.IE1.T:Sjap\GST0 Yes
ago3.MtnA.T:Ivir\HA10 Yes
agodsRNA.C0 Yes
agodsRNA.cKa0 Yes
agodsRNA.cMa0 Yes
agodsRNA.Fbox0 Yes
agodsRNA.N0 Yes
agoGD13600 Yes
agoIE1.T:Sjap\GST0 Yes
agoMtnA.T:Ivir\HA10 Yes
agoMtnA.T:SV5\V50 Yes
agoScer\UAS.T:Avic\GFP-YFP0 Yes
agoΔF.MtnA.T:Ivir\HA10 Yes
agoΔN.Scer\UAS0 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
Insertions
Type of insertions
Name
Expression data
insertion of enhancer trap binary system
miscellaneous insertions
hide Gene Ontology: Function, Process & Cellular Component ( 11 unique terms )
hide Terms Based on Experimental Evidence ( 5 terms )
Molecular Function ( 0 terms)
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
traceable author statement
inferred from sequence or structural similarity with Saccharomyces CDC4
Biological Process
CV term
References
Cellular Component
CV term
References
non-traceable author statement
hide Sequence Ontology: Class of Gene
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Protein-protein
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Interacts with
Please look at the allele data for full details of the genetic interactions
ago allele
Gene
References
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BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
Genome-wide drosophilid orthologs
Curated drosophilid orthologs
Linkouts
InParanoid A subset of ortholog calls from InParanoid.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
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hide Stocks Listed in FlyBase ( 9 )
Bloomington
Harvard
Kyoto
hide Genomic Clones ( 2 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 88 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
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Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
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Source for database identity of
Source for database merge of
Source for merge of: ago anon-WO0118547.345
Source for merge of: ago CG15010
Additional comments
Source for merge of ago anon-WO0118547.345 was sequence comparison (date:051113).
hide Other Comments
dsRNA has been made from templates generated with primers directed against this gene.
Mutants in ago show increased tissue growth.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
Area matching Drosophila EST AA392932 (inverted).
ago is involved in developmental regulation of CycE degradation.
Clones of mutant cells in the eye disc result in cell fate changes and overrepresentation of mutant cells in the eye.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
Linkouts
BioGRID - A database of protein and genetic interactions
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
InParanoid A subset of ortholog calls from InParanoid.
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs.
hide Synonyms & Secondary IDs ( 9 )
Reported As
Symbol Synonym
anon-WO0118547.345
 
Name Synonym
Secondary FlyBase IDs
  • FBgn0035516
  • FBgn0062079
hide References ( 69 )
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hide Recent research papers ( 2 )
Nicholson et al., 2011, Development 138(2): 251--260
Notch-dependent expression of the archipelago ubiquitin ligase subunit in the Drosophila eye. [FBrf0212669]
Mandal et al., 2010, J. Cell Biol. 188(4): 473--479
Metabolic control of G1-S transition: cyclin E degradation by p53-induced activation of the ubiquitin-proteasome system. [FBrf0210063]
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All reviews listed in FlyBase were published before 2010