A Database of Drosophila Genes & Genomes

FB2013_03, released May 7th, 2013
 

Gene Dmel\Rheb

General Information
SymbolDmel\RhebSpeciesD. melanogaster
NameRas homolog enriched in brain ortholog (H. sapiens)Annotation symbolCG1081
Feature typeprotein_coding_geneFlyBase IDFBgn0041191
Gene Model StatusCurrent Stock availability 10 publicly available
Also Known AsdRheb
Genomic Location
Chromosome (arm)3RRecombination map
Cytogenetic map83B2-83B2Sequence location3R:1,394,643..1,396,213 [+]

Genomic Maps

GBrowse View Help
Beta
detailed view
hide Summary Information
Automatically generated summary

See sections below for more information
The gene Ras homolog enriched in brain ortholog (H. sapiens) is referred to in FlyBase by the symbol Dmel\Rheb (CG1081, FBgn0041191). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding; GTPase activity. There is experimental evidence for 13 unique biological process terms, many of which group under: biological regulation; cellular component organization or biogenesis; growth; single-organism developmental process; developmental growth; positive regulation of ribosome biogenesis; energy taxis; response to nutrient levels; cell cycle; response to light stimulus; response to starvation; cell cycle process; ribosome biogenesis; positive regulation of cellular biosynthetic process. 34 alleles are reported. The phenotypes of these alleles are annotated with: organ system; organ system subdivision; multicellular structure; cell cycle; adult segment; external compound sense organ; cellular process; adult; cell cycle process; peripheral nervous system. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Small GTP-binding protein domain; Small GTPase superfamily; Small GTPase superfamily, Ras type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages, in stages of adults of both sexes. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult midgut, larval/adult Malpighian tubules, adult heart, adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval midgut, larval/adult hindgut, larval/adult fat body, larval salivary gland, adult ovary, adult testis, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1630949_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of Rheb. Gene sequence location is 3R:1394643..1396213.

User Contributed Data
External Summaries
hide Recent Updates
Description
What does this section display?
This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).
What does this section not display?
This section does not currently display links that were removed or gene model changes.
Update Feed
Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
Controlled Vocabulary Terms
FB2013_02
Controlled Vocabulary Terms
All updates Click here to see a list of all updates to this record from FB2010_08 and on.
hide Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map
Evidence for location
83B2-83B2  
Limits computationally determined from genome sequence between P{PZ}Snr101319&P{PZ}Itp-r83A05616 and P{lacW}Atus1938  
Experimentally Determined Cytological Location
Cytogenetic map
Notes
References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
hide Gene Model & Products
Please see the GBrowse view of Dmel\Rheb for information on other features GBrowse View Help
To submit a correction to a gene model please use the Contact FlyBase form
detailed view FBtr0078692 FBtr0078689 FBtr0290215 FBtr0078753 FBtr0078693 FBtr0078694 FBtr0089685 FBtr0114453 FBtr0089686 FBpp0078341 FBpp0078338 FBpp0288654 FBpp0078402 FBpp0078343 FBpp0078342 FBti0131320 FBti0057189 FBti0071017 FBti0039507 FBti0043989 FBti0066238 FBti0011410 FBti0023378 FBti0056742 FBti0074739 FBti0039705 FBti0029341 FBti0112339
Comments on Gene Model
Gene model reviewed during 5.48
Low-frequency RNA-Seq exon junction(s) not annotated.
hide Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Associated CDS (aa)
FBtr0078693
  1225
  182
FBtr0078694
  1059
  182
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
hide Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank protein
FBpp0078342  
20.7  
182  
5.32  
FBpp0078343  
20.7  
182  
5.32  
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
hide Sequences Consistent with the Gene Model
DDBJ /
EMBL /
GenBank
DNA sequence
Protein sequence
Name
 
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL
hide Mapped Features
Mapped Features have been reorganized, please see this article for details.
Additional mapped features and mutations can be found on GBrowse or related reports.
Type
Symbol & Location
Additional Notes
References
hide External Data
Linkouts
Crossreferences
hide Expression Data
hideTranscript Expression
in situ
Stage
Tissue/Position (including subcellular localization)
Reference
Comment:maternally deposited
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
hide Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term
References
hide Expression Deduced from Reporters
hide High-Throughput Expression Data
Associated Tools
Reference
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
hide FlyAtlas Anatomy Microarray

FlyAtlas Anatomical Expression Data

(FlyAtlas-RNA.adult)

(FlyAtlas-RNA.larva)


   Styles
   Scales

Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult crop, adult midgut, larval/adult Malpighian tubules, adult heart, adult salivary gland, larval trachea, adult spermathecae, adult male accessory gland. Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, larval midgut, larval/adult hindgut, larval/adult fat body, larval salivary gland, adult ovary, adult testis, larval/adult carcass.
[download data (TSV)]

Guide to FlyAtlas expression level colors
 
No expression (0 - 9.999)
 
Low expression (10 - 99.999)
 
Moderate expression (100 - 499.999)
 
High level expression (500 - 999.999)
 
Very high expression (>999.999)

Linear, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 (603.8)
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 (607.525)
Larval Carcass
 
 335.175
Adult Head
 (559.6)
Adult Eye
 (686.325)
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 526.2
Adult Midgut
 (583)
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 (630.7)
Adult Fat Body
 
 469.2
Adult Salivary Gland
 537.4
Adult Heart
 (796.35)
Adult VirginFemale Spermatheca
 (963.2)
Adult InseminatedFemale Spermatheca
 (940.9)
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 (767.2)
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
Linear, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Linear, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 Very high 
log, scaled to maximum expression level
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Moderate expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 607.525
Larval Carcass
 
 335.175
Adult Head
 559.6
Adult Eye
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 526.2
Adult Midgut
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 537.4
Adult Heart
 796.35
Adult VirginFemale Spermatheca
 (963.2)
Adult InseminatedFemale Spermatheca
 (940.9)
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
log, scaled to High level expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
log, scaled to Very high expression
Tissue   Expression Level
Larval Central Nervous System
 
 351.85
Larval Midgut
 
 353.2
Larval Hindgut
 
 369.2
Larval Malpighian Tubules
 
 603.8
Larval Fat Body
 
 487.9
Larval Salivary Gland
 
 379.1
Larval Trachea
 
 607.525
Larval Carcass
 
 335.175
Adult Head
 
 559.6
Adult Eye
 
 686.325
Adult Brain
 
 386.5
Adult Thoracic-Abdominal Ganglion
 
 430.5
Adult Crop
 
 526.2
Adult Midgut
 
 583
Adult Hindgut
 
 358.8
Adult Malpighian Tubules
 
 630.7
Adult Fat Body
 
 469.2
Adult Salivary Gland
 
 537.4
Adult Heart
 
 796.35
Adult VirginFemale Spermatheca
 
 963.2
Adult InseminatedFemale Spermatheca
 
 940.9
Adult Ovary
 
 377.6
Adult Testis
 
 219.2
Adult Male Accessory Gland
 
 767.2
Adult Carcass
 
 499.8
Expression Level Scale
 None 
 Low 
 Moderate 
 High 
 Very high 
Heatmap
Tissue   Expression Level
Larval Central Nervous System
 
 
Larval Midgut
 
 
Larval Hindgut
 
 
Larval Malpighian Tubules
 
 
Larval Fat Body
 
 
Larval Salivary Gland
 
 
Larval Trachea
 
 
Larval Carcass
 
 
Adult Head
 
 
Adult Eye
 
 
Adult Brain
 
 
Adult Thoracic-Abdominal Ganglion
 
 
Adult Crop
 
 
Adult Midgut
 
 
Adult Hindgut
 
 
Adult Malpighian Tubules
 
 
Adult Fat Body
 
 
Adult Salivary Gland
 
 
Adult Heart
 
 
Adult VirginFemale Spermatheca
 
 
Adult InseminatedFemale Spermatheca
 
 
Adult Ovary
 
 
Adult Testis
 
 
Adult Male Accessory Gland
 
 
Adult Carcass
 
 

FlyAtlas Organ/Tissue Expression, larval vs. adult
Larval Expression Level Tissue Adult Expression Level
 
NA 
Head
 
 559.6
 
NA 
Eye
 
 686.325
 
NA 
Brain
 
 386.5
 
351.85 
Central Nervous System
 
 NA
 
NA 
Thoracic-Abdominal Ganglion
 
 430.5
 
NA 
Crop
 
 526.2
 
353.2 
Midgut
 
 583
 
369.2 
Hindgut
 
 358.8
 
603.8 
Malpighian Tubules
 
 630.7
 
487.9 
Fat Body
 
 469.2
 
379.1 
Salivary Gland
 
 537.4
 
NA 
Heart
 
 796.35
 
607.525 
Trachea
 
 NA
 
NA 
VirginFemale Spermatheca
 
 963.2
 
NA 
InseminatedFemale Spermatheca
 
 940.9
 
NA 
Ovary
 
 377.6
 
NA 
Testis
 
 219.2
 
NA 
Male Accessory Gland
 
 767.2
 
335.175 
Carcass
 
 499.8

FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
hide modENCODE Anatomy RNA-Seq

modENCODE Tissue Expression Data

(modENCODE_mRNA-Seq_tissues)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (42)
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 (27)
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 26
head, mated 4-day male
 (31)
head, mated 20-day male
 (44)
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 (45)
digestive system, 1-day adult
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 (27)
ovary, virgin 4-day female
 (36)
ovary, mated 4-day female
 26
testis, mated 4-day male
 (33)
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 (42)
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 26
head, mated 4-day male
 31
head, mated 20-day male
 (44)
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 (45)
digestive system, 1-day adult
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 27
ovary, virgin 4-day female
 (36)
ovary, mated 4-day female
 26
testis, mated 4-day male
 (33)
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 42
central nervous system, larvae L3
 
 24
central nervous system, pupae P8
 
 17
head, virgin 1-day female
 
 17
head, virgin 4-day female
 
 23
head, virgin 20-day female
 
 27
head, mated 1-day female
 
 20
head, mated 4-day female
 
 23
head, mated 20-day female
 
 25
head, mated 1-day male
 
 26
head, mated 4-day male
 
 31
head, mated 20-day male
 
 44
salivary gland, larvae L3 wandering
 
 12
salivary gland, white prepupae
 
 24
digestive system, larvae L3 wandering
 
 45
digestive system, 1-day adult
 
 26
digestive system, 4-day adult
 
 20
digestive system, 20-day adult
 
 21
fat body, larvae L3 wandering
 
 11
fat body, white prepupae
 
 19
fat body, pupae P8
 
 20
carcass, larvae L3 wandering
 
 26
carcass, 1-day adult
 
 19
carcass, 4-day adult
 
 20
carcass, 20-day adult
 
 27
ovary, virgin 4-day female
 
 36
ovary, mated 4-day female
 
 26
testis, mated 4-day male
 
 33
accessory gland, mated 4-day male
 
 24
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Tissue   Expression Level
imaginal disc, larvae L3 wandering
 
 
central nervous system, larvae L3
 
 
central nervous system, pupae P8
 
 
head, virgin 1-day female
 
 
head, virgin 4-day female
 
 
head, virgin 20-day female
 
 
head, mated 1-day female
 
 
head, mated 4-day female
 
 
head, mated 20-day female
 
 
head, mated 1-day male
 
 
head, mated 4-day male
 
 
head, mated 20-day male
 
 
salivary gland, larvae L3 wandering
 
 
salivary gland, white prepupae
 
 
digestive system, larvae L3 wandering
 
 
digestive system, 1-day adult
 
 
digestive system, 4-day adult
 
 
digestive system, 20-day adult
 
 
fat body, larvae L3 wandering
 
 
fat body, white prepupae
 
 
fat body, pupae P8
 
 
carcass, larvae L3 wandering
 
 
carcass, 1-day adult
 
 
carcass, 4-day adult
 
 
carcass, 20-day adult
 
 
ovary, virgin 4-day female
 
 
ovary, mated 4-day female
 
 
testis, mated 4-day male
 
 
accessory gland, mated 4-day male
 
 

hide modENCODE Development RNA-Seq

modENCODE Temporal Expression Data

(modENCODE_mRNA-Seq_U)


   Styles
   Scales

Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderately high expression. Peak expression observed at stages throughout embryogenesis, during late larval stages, during early pupal stages, in stages of adults of both sexes.
[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (62)
embryo 02-04hr
 (48)
embryo 04-06hr
 (35)
embryo 06-08hr
 (43)
embryo 08-10hr
 (52)
embryo 10-12hr
 (68)
embryo 12-14hr
 (63)
embryo 14-16hr
 (43)
embryo 16-18hr
 (49)
embryo 18-20hr
 (56)
embryo 20-22hr
 (50)
embryo 22-24hr
 (73)
larva L1
 (47)
larva L2
 (40)
larva L3 12hr old
 (37)
larva L3 puffstage 1-2
 (56)
larva L3 puffstage 3-6
 (60)
larva L3 puffstage 7-9
 (68)
white prepupae new
 (55)
white prepupae 12hr
 (49)
white prepupae 24hr
 (52)
pupae 2d postWPP
 (53)
pupae 3d postWPP
 (44)
pupae 4d postWPP
 
 22
adult male 01day
 (45)
adult male 05day
 (54)
adult male 30day
 (45)
adult female 01day
 (40)
adult female 05day
 (59)
adult female 30day
 (55)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Moderate expression
Developmental Stage   Expression Level
embryo 00-02hr
 (62)
embryo 02-04hr
 (48)
embryo 04-06hr
 (35)
embryo 06-08hr
 (43)
embryo 08-10hr
 (52)
embryo 10-12hr
 (68)
embryo 12-14hr
 (63)
embryo 14-16hr
 (43)
embryo 16-18hr
 (49)
embryo 18-20hr
 (56)
embryo 20-22hr
 (50)
embryo 22-24hr
 (73)
larva L1
 (47)
larva L2
 (40)
larva L3 12hr old
 (37)
larva L3 puffstage 1-2
 (56)
larva L3 puffstage 3-6
 (60)
larva L3 puffstage 7-9
 (68)
white prepupae new
 (55)
white prepupae 12hr
 (49)
white prepupae 24hr
 (52)
pupae 2d postWPP
 (53)
pupae 3d postWPP
 (44)
pupae 4d postWPP
 
 22
adult male 01day
 (45)
adult male 05day
 (54)
adult male 30day
 (45)
adult female 01day
 (40)
adult female 05day
 (59)
adult female 30day
 (55)
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Developmental Stage   Expression Level
embryo 00-02hr
 
 62
embryo 02-04hr
 
 48
embryo 04-06hr
 
 35
embryo 06-08hr
 
 43
embryo 08-10hr
 
 52
embryo 10-12hr
 
 68
embryo 12-14hr
 
 63
embryo 14-16hr
 
 43
embryo 16-18hr
 
 49
embryo 18-20hr
 
 56
embryo 20-22hr
 
 50
embryo 22-24hr
 
 73
larva L1
 
 47
larva L2
 
 40
larva L3 12hr old
 
 37
larva L3 puffstage 1-2
 
 56
larva L3 puffstage 3-6
 
 60
larva L3 puffstage 7-9
 
 68
white prepupae new
 
 55
white prepupae 12hr
 
 49
white prepupae 24hr
 
 52
pupae 2d postWPP
 
 53
pupae 3d postWPP
 
 44
pupae 4d postWPP
 
 22
adult male 01day
 
 45
adult male 05day
 
 54
adult male 30day
 
 45
adult female 01day
 
 40
adult female 05day
 
 59
adult female 30day
 
 55
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Developmental Stage   Expression Level
embryo 00-02hr
 
 
embryo 02-04hr
 
 
embryo 04-06hr
 
 
embryo 06-08hr
 
 
embryo 08-10hr
 
 
embryo 10-12hr
 
 
embryo 12-14hr
 
 
embryo 14-16hr
 
 
embryo 16-18hr
 
 
embryo 18-20hr
 
 
embryo 20-22hr
 
 
embryo 22-24hr
 
 
larva L1
 
 
larva L2
 
 
larva L3 12hr old
 
 
larva L3 puffstage 1-2
 
 
larva L3 puffstage 3-6
 
 
larva L3 puffstage 7-9
 
 
white prepupae new
 
 
white prepupae 12hr
 
 
white prepupae 24hr
 
 
pupae 2d postWPP
 
 
pupae 3d postWPP
 
 
pupae 4d postWPP
 
 
adult male 01day
 
 
adult male 05day
 
 
adult male 30day
 
 
adult female 01day
 
 
adult female 05day
 
 
adult female 30day
 
 

modENCODE Temporal Expression Data (Graveley et al., 2011)
hide modENCODE Cell Lines RNA-Seq

modENCODE Cell Line Expression Data

(modENCODE_mRNA-Seq_cell.A)

(modENCODE_mRNA-Seq_cell.B)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
Linear, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (39)
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 (29)
embryonic GM2
 (51)
embryonic Kc167
 (30)
embryonic S1
 (42)
embryonic S3
 26
leg disc CME L1
 
 24
wing disc CME-W2
 (30)
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 (30)
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 (30)
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 (39)
mixed discs ML-DmD4-c1
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 (34)
ovary fGS/OSS
 (33)
ovary OSC
 (32)
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Cell Line   Expression Level
Schneider line 2 S2R+
 (39)
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 29
embryonic GM2
 (51)
embryonic Kc167
 30
embryonic S1
 (42)
embryonic S3
 26
leg disc CME L1
 
 24
wing disc CME-W2
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 (39)
mixed discs ML-DmD4-c1
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 26
tumorous blood cells mbn2
 (34)
ovary fGS/OSS
 (33)
ovary OSC
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Cell Line   Expression Level
Schneider line 2 S2R+
 
 39
Schneider line 2 Sg4
 
 22
embryonic 1182-4H
 
 29
embryonic GM2
 
 51
embryonic Kc167
 
 30
embryonic S1
 
 42
embryonic S3
 
 26
leg disc CME L1
 
 24
wing disc CME-W2
 
 30
wing disc ML-DmD8
 
 15
wing disc ML-DmD9
 
 30
wing disc ML-DmD16-c3
 
 18
wing disc ML-DmD21
 
 24
wing disc ML-DmD32
 
 30
haltere disc ML-DmD17-c3
 
 17
eye-antennal disc ML-DmD11
 
 24
antennal disc ML-DmD20-c5
 
 39
mixed discs ML-DmD4-c1
 
 26
CNS ML-DmBG1-c1
 
 19
CNS ML-DmBG2-c2
 
 26
tumorous blood cells mbn2
 
 34
ovary fGS/OSS
 
 33
ovary OSC
 
 32
ovary OSS
 
 11
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Cell Line   Expression Level
Schneider line 2 S2R+
 
 
Schneider line 2 Sg4
 
 
embryonic 1182-4H
 
 
embryonic GM2
 
 
embryonic Kc167
 
 
embryonic S1
 
 
embryonic S3
 
 
leg disc CME L1
 
 
wing disc CME-W2
 
 
wing disc ML-DmD8
 
 
wing disc ML-DmD9
 
 
wing disc ML-DmD16-c3
 
 
wing disc ML-DmD21
 
 
wing disc ML-DmD32
 
 
haltere disc ML-DmD17-c3
 
 
eye-antennal disc ML-DmD11
 
 
antennal disc ML-DmD20-c5
 
 
mixed discs ML-DmD4-c1
 
 
CNS ML-DmBG1-c1
 
 
CNS ML-DmBG2-c2
 
 
tumorous blood cells mbn2
 
 
ovary fGS/OSS
 
 
ovary OSC
 
 
ovary OSS
 
 

hide modENCODE Treatments RNA-Seq

modENCODE Treatment Expression Data

(modENCODE_mRNA-Seq_treatments)


   Styles
   Scales


[download data (TSV)]

Guide to modENCODE expression level colors
 
No/Extremely low expression (0 - 0)
 
Very low expression (1 - 3)
 
Low expression (4 - 10)
 
Moderate expression (11 - 25)
 
Moderately high expression (26 - 50)
 
High expression (51 - 100)
 
Very high expression (101 - 1000)
 
Extremely high expression (>1000)

Linear, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 (31)
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 (29)
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 (27)
Ethanol 5% 3 hrs, larvae L3
 (35)
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (37)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (34)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 (31)
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
Linear, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
Linear, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Extremely high 
log, scaled to maximum expression level
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
log, scaled to Moderate expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 27
Ethanol 5% 3 hrs, larvae L3
 (35)
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 (37)
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 (34)
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 (35)
Paraquat 10 mM 48 hrs, 4-day adult
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
log, scaled to High expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
log, scaled to Extremely high expression
Treatment   Expression Level
extended cold, 4-day adult
 
 13
cold shock, 4-day adult
 
 8
heat shock, 4-day adult
 
 22
Cadmium 50 mM 6 hrs, larvae L3
 
 20
Cadmium 50 mM 12 hrs, larvae L3
 
 31
Cadmium 50 mM 48 hrs, 4-day adult
 
 25
Cadmium 100 mM 48 hrs, 4-day adult
 
 29
Copper 0.5 mM 12 hrs, larvae L3
 
 9
Copper 15 mM 48 hrs, 4-day adult
 
 23
Zinc 5 mM 12 hrs, larvae L3
 
 4
Zinc 4.5 mM 48 hrs, 4-day adult
 
 23
Ethanol 2.5% 3 hrs, larvae L3
 
 27
Ethanol 5% 3 hrs, larvae L3
 
 35
Ethanol 10% 3 hrs, larvae L3
 
 21
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 37
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 34
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 13
Paraquat 5 mM 48 hrs, 4-day adult
 
 35
Paraquat 10 mM 48 hrs, 4-day adult
 
 31
Rotenone 2 μg 12 hrs, larvae L3
 
 21
Rotenone 8 μg 12 hrs, larvae L3
 
 18
Expression Level Scale
 Very low 
 Low 
 Moderate 
 Moderately high 
 High 
 Very high 
 Extremely high 
Heatmap
Treatment   Expression Level
extended cold, 4-day adult
 
 
cold shock, 4-day adult
 
 
heat shock, 4-day adult
 
 
Cadmium 50 mM 6 hrs, larvae L3
 
 
Cadmium 50 mM 12 hrs, larvae L3
 
 
Cadmium 50 mM 48 hrs, 4-day adult
 
 
Cadmium 100 mM 48 hrs, 4-day adult
 
 
Copper 0.5 mM 12 hrs, larvae L3
 
 
Copper 15 mM 48 hrs, 4-day adult
 
 
Zinc 5 mM 12 hrs, larvae L3
 
 
Zinc 4.5 mM 48 hrs, 4-day adult
 
 
Ethanol 2.5% 3 hrs, larvae L3
 
 
Ethanol 5% 3 hrs, larvae L3
 
 
Ethanol 10% 3 hrs, larvae L3
 
 
Caffeine 1.5 mg/ml 4 hrs, larvae L3
 
 
Caffeine 2.5 mg/ml 48 hrs, 4-day adult
 
 
Caffeine 25 mg/ml 48 hrs, 4-day adult
 
 
Paraquat 5 mM 48 hrs, 4-day adult
 
 
Paraquat 10 mM 48 hrs, 4-day adult
 
 
Rotenone 2 μg 12 hrs, larvae L3
 
 
Rotenone 8 μg 12 hrs, larvae L3
 
 

hide Expression Clusters
A cluster of genes with similar mRNA expression dynamics across development.
hide External Data & Images
Linkouts
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
hide Alleles & Phenotypes
hide Summary of Allele Phenotypes
Lethality
Allele
Sterility
Allele
Other Phenotypes
Allele
Phenotype manifest in
Allele
hide Classical Alleles ( 21 )
For All Classical Alleles Show

Allele of RhebClassMutagenStocksKnown lesion
RhebLA010532 --
Rheb4L11 Yes
RhebAV4loss of function allele1 Yes
Rhebc021751 --
RhebEY080851 --
Rheb1TI0 Yes
Rheb2010 Yes
Rheb26.2
0 --
Rheb2D10 --
Rheb2G50 Yes
Rheb3M20 Yes
Rheb44.10 Yes
Rheb5010 Yes
Rheb560 Yes
Rheb7A10 Yes
RhebEP50.084-loxP0 Yes
RhebEP50.084
0 Yes
RhebGSjE20 Yes
RhebPΔ10 Yes
RhebPΔ20 Yes
Rhebunspecified
0 --
hide Alleles Carried on Transgenic Constructs ( 13 )
For All Alleles Carried on Transgenic Constructs Show

Allele of RhebClassMutagenStocksKnown lesion
RhebScer\UAS.cPa2 Yes
RhebHMS009231 Yes
Rhebt10.81 Yes
Rheb1.1.Scer\UAS0 Yes
RhebAct5C.cHa.T:Hsap\MYC0 Yes
RhebAct5C.T:Hsap\MYC0 Yes
RhebAct5C.T:Zzzz\FLAG0 Yes
RhebdsRNA.cBa0 Yes
RhebdsRNA.cPa0 Yes
RhebGD132540 Yes
RhebNIG.1081R0 Yes
RhebScer\UAS.cSa0 Yes
RhebScer\UAS.cUa0 Yes
hide Aneuploid Aberrations
Disrupted in
hide Transgenic Constructs & Insertions
Transgenic Constructs
Type of construct
Name
Expression data
characterization construct
Insertions
Type of insertions
Name
Expression data
hide Gene Ontology: Function, Process & Cellular Component ( 20 unique terms )
hide Terms Based on Experimental Evidence ( 15 terms )
Molecular Function
CV term
References
inferred from direct assay
inferred from physical interaction with Tctp
Biological Process
CV term
References
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from mutant phenotype
inferred from expression pattern
inferred from direct assay
Cellular Component ( 0 terms)
hide Terms Based on Predictions or Assertions ( 6 terms )
Molecular Function
CV term
References
inferred from sequence or structural similarity
non-traceable author statement
Biological Process
CV term
References
Cellular Component
CV term
References
inferred from electronic annotation with InterPro:IPR020849
hide Sequence Ontology: Class of Gene
hide Interactions & Pathways
hide Summary of Physical Interactions
protein-protein
Interacting group
Assay
References
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
anti tag coimmunoprecipitation, peptide massfingerprinting
hide Summary of Genetic Interactions
Interacts with
Please look at the allele data for full details of the genetic interactions
Rheb allele
Gene
References
hide External Data
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
hide Orthologs
hide OrthoDB Orthologs (48) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
Drosophila inclusive ortholog search
Dipteran inclusive ortholog search
Insect inclusive ortholog search
Arthropod inclusive ortholog search
Metazoa inclusive ortholog search
hideOrthologs in Drosophila Species (EOG6256D6)
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila melanogaster
fruit fly 
 
 
Drosophila simulans
 
Y
 
Drosophila sechellia
 
 
 
Drosophila sechellia
 
Y
 
Drosophila erecta
 
Y
 
Drosophila yakuba
 
Y
 
Drosophila ananassae
 
Y
 
Drosophila pseudoobscura pseudoobscura
 
Y
 
Drosophila persimilis
 
Y
 
Drosophila willistoni
 
Y
 
Drosophila virilis
 
Y
 
Drosophila mojavensis
 
Y
 
Drosophila grimshawi
 
Y
 
hideOrthologs in non-Drosophila Dipterans (EOG63V04Q)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Aedes aegypti
Yellow fever mosquito 
 
Anopheles gambiae
Malaria mosquito 
 
Culex quinquefasciatus
Southern house mosquito 
 
hideOrthologs in non-Dipteran Insects (EOG61NSHD)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Apis mellifera
Western honey bee 
Amel\Rheb
 
Nasonia vitripennis
Parasitic wasp 
Nvit\Nasvi2EG022273
 
Acromyrmex echinatior
Panamanian leafcutter ant 
Aech\AECH14480
 
Atta cephalotes
Leafcutter ant 
Acep\ACEP26351
 
Camponotus floridanus
Florida carpenter ant 
Cflo\CFLO21895
 
Harpegnathos saltator
Jerdons jumping ant 
Hsal\HSAL20492
 
Linepithema humile
Argentine ant 
Lhum\LH13571
 
Pogonomyrmex barbatus
Red harvester ant 
Pbar\PB25177
 
Solenopsis invicta
Red fire ant 
Sinv\SINV22877
 
Acyrthosiphon pisum
Pea aphid 
 
Acyrthosiphon pisum
Pea aphid 
 
Acyrthosiphon pisum
Pea aphid 
 
Acyrthosiphon pisum
Pea aphid 
 
Bombyx mori
Silkmoth 
 
Pediculus humanus
Human body louse 
 
Tribolium castaneum
Red flour beetle 
 
Tribolium castaneum
Red flour beetle 
 
hideOrthologs in non-Insect Arthropods (EOG6XSJ65)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Daphnia pulex
Water flea 
 
Ixodes scapularis
Deer tick 
 
hideOrthologs in non-Arthropod Metazoa (EOG628DWC)
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Caenorhabditis elegans
Nematode 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Strongylocentrotus purpuratus
Purple sea urchin 
 
Danio rerio
Zebrafish 
 
Danio rerio
Zebrafish 
 
Xenopus tropicalis
Western clawed frog 
 
Xenopus tropicalis
Western clawed frog 
 
Gallus gallus
Domestic chicken 
 
Mus musculus
House mouse 
 
Mus musculus
House mouse 
 
Rattus norvegicus
Norway rat 
 
Homo sapiens
Human 
 
Homo sapiens
Human 
 
hide Human Orthologs (2)
Gene
OMIM
HGNC
 
 
hideAAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism
Gene
Drosophila simulans
Drosophila sechellia
Drosophila erecta
Drosophila yakuba
Drosophila ananassae
Drosophila pseudoobscura pseudoobscura
Drosophila persimilis
Drosophila willistoni
Drosophila virilis
Drosophila mojavensis
Drosophila grimshawi
hide Stocks & Reagents
hide Stocks Listed in FlyBase ( 10 )
Bloomington
Harvard
Kyoto
hide Genomic Clones ( 1 )
Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
hide cDNA Clones ( 82 )
Please Note
This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
hide RNAi & Array Information
Linkouts
DRSC - Results from RNAi screens.
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
hide Antibody Information
hide Other Information
hide Discoverer
hide Etymology
hide Identification
hide Relationship to Other Genes
Source for database identity of
Source for database merge of
Source for merge of: Rheb CG1081
Additional comments
hide Other Comments
RNAi screen using dsRNA made from templates generated with primers directed against this gene results in chromosome misalignment on the metaphase spindle when assayed in S2 cells in the presence of Cdc27 dsRNA. This phenotype cannot be observed when the screen is performed without Cdc27 dsRNA.
dsRNA made from templates generated with primers directed against this gene results in a reduced mean cell diameter. Silencing Rheb generates a cell-expression profile similar to that of rapamycin-treated cells.
dsRNA made from templates generated with primers directed against this gene promotes the phosphorylation of Akt1 (dependent on TORC2) and inhibits phosphorylation of S6k in S2 cells. In addition, knockdown of Rheb enhances insulin-stimulated Akt1 phosphorylation.
dsRNA made from templates generated with primers directed against this gene used to treat S2 cells.
Signaling through Tor and its upstream regulators Pi3K92E/Pi3K21B and Rheb is necessary and sufficient to suppress starvation-induced autophagy in the fat body.
dsRNA made from templates generated with primers directed against this gene tested in RNAi screen for effects on Kc167 and S2R+ cell morphology.
Levels of Rheb mRNA are rapidly induced in response to protein starvation.
In mitotic tissues, overexpression of Rheb accelerates passage through G1-S phase without affecting rates of cell division, whereas in endoreplicating tissues, overexpression increases DNA ploidy. Overexpression of Rheb can also drive cell growth in starved animals.
hide External Crossreferences & Linkouts
Sequence Crossreferences
RefSeq (Transcripts)
RefSeq (Proteins)
Entrez Gene - A searchable database of RefSeq genes.
Other Crossreferences
InterPro domains - A database of protein families, domains, and functional sites
BDGP expression data - Patterns of gene expression in Drosophila embryogenesis
Linkouts
DPiM - DPiM, Drosophila Protein interaction Map
DroID - A comprehensive database of gene and protein interactions.
DRSC - Results from RNAi screens.
FLIGHT - Cell culture data for RNAi and other high-throughput technologies
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans
GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents
Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution
InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets.
modMine - Data generated by the modENCODE project.
hide Synonyms & Secondary IDs ( 14 )
Reported As
Symbol Synonym
Dm Rheb
Name Synonym
Ras homolog enriched in brain
Ras homolog enriched in brain ortholog (H. sapiens)
 
Ras homologue enriched in brain
Ras homology enriched in brain
Secondary FlyBase IDs
  • FBgn0037343
hide References ( 146 )
Generate a list of
List References by type
hide Recent research papers ( 20 )
Alvarez-Ponce et al., 2012, Mol. Biol. Evol. 29(1): 123--132
Molecular Population Genetics of the Insulin/TOR Signal Transduction Pathway: A Network-Level Analysis in Drosophila melanogaster. [FBrf0217435]
Avet-Rochex et al., 2012, Development 139(15): 2763--2772
Concerted control of gliogenesis by InR/TOR and FGF signalling in the Drosophila post-embryonic brain. [FBrf0218842]
Brown et al., 2012, PLoS ONE 7(9): e44888
The Small GTPase Rheb Affects Central Brain Neuronal Morphology and Memory Formation in Drosophila. [FBrf0219518]
Dimitroff et al., 2012, PLoS ONE 7(2): e30722
Diet and Energy-Sensing Inputs Affect TorC1-Mediated Axon Misrouting but Not TorC2-Directed Synapse Growth in a Drosophila Model of Tuberous Sclerosis. [FBrf0217461]
Killip and Grewal, 2012, Dev. Biol. 371(2): 191--202
DREF is required for cell and organismal growth in Drosophila and functions downstream of the nutrition/TOR pathway. [FBrf0219592]
Pircs et al., 2012, PLoS ONE 7(8): e44214
Advantages and Limitations of Different p62-Based Assays for Estimating Autophagic Activity in Drosophila. [FBrf0219364]
Tokusumi et al., 2012, PLoS ONE 7(7): e41604
Gene regulatory networks controlling hematopoietic progenitor niche cell production and differentiation in the Drosophila lymph gland. [FBrf0219204]
Wang et al., 2012, Mol. Cell. Biol. 32(12): 2203--2213
LST8 Regulates Cell Growth via Target-of-Rapamycin Complex 2 (TORC2). [FBrf0218417]
Wong et al., 2012, Curr. Biol. 22(17): 1616--1621
Drosophila TRPML Is Required for TORC1 Activation. [FBrf0219457]
Yaniv et al., 2012, Curr. Biol. 22(19): 1774--1782
Axon Regrowth during Development and Regeneration Following Injury Share Molecular Mechanisms. [FBrf0219661]
Barth et al., 2011, Cell Death Differ. 18(6): 915--924
Autophagy in Drosophila ovaries is induced by starvation and is required for oogenesis. [FBrf0213616]
Cheng et al., 2011, Cell 146(3): 435--447
Anaplastic Lymphoma Kinase Spares Organ Growth during Nutrient Restriction in Drosophila. [FBrf0214599]
Eddison et al., 2011, Neuron 70(5): 979--990
arouser Reveals a Role for Synapse Number in the Regulation of Ethanol Sensitivity. [FBrf0213908]
Lindquist et al., 2011, Genome Res. 21(3): 433--446
Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1-S6K pathway signaling. [FBrf0213199]
Murillo-Maldonado et al., 2011, Diabetes 60(5): 1632--1636
Drosophila insulin pathway mutants affect visual physiology and brain function besides growth, lipid, and carbohydrate metabolism. [FBrf0213585]
Parisi et al., 2011, BMC Biol. 9: 65
Drosophila insulin and target of rapamycin (TOR) pathways regulate GSK3 beta activity to control Myc stability and determine Myc expression in vivo. [FBrf0216934]
Resnik-Docampo and de Celis, 2011, PLoS ONE 6(1): e14528
MAP4K3 Is a Component of the TORC1 Signalling Complex that Modulates Cell Growth and Viability in Drosophila melanogaster. [FBrf0212911]
Sousa-Nunes et al., 2011, Nature 471(7339): 508--512
Fat cells reactivate quiescent neuroblasts via TOR and glial insulin relays in Drosophila. [FBrf0214426]
Tang et al., 2011, EMBO J. 30(4): 636--651
Atg1-mediated myosin II activation regulates autophagosome formation during starvation-induced autophagy. [FBrf0213047]
Zielke et al., 2011, Nature 480(7375): 123--127
Control of Drosophila endocycles by E2F and CRL4CDT2. [FBrf0216829]
hide Recent reviews (0)
All reviews listed in FlyBase were published before 2011