Gene Dmel\Stalker\ORF1

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General Information

Symbol

Dmel\Stalker\ORF1

Species

D. melanogaster

Name

ORF1

Annotation symbol

Feature type

transposable_element_gene

FlyBase ID

FBgn0045962

Gene Model Status

Not Applicable

Stock availability

None publicly available

Genomic Location

Chromosome (arm)

Recombination map

Cytogenetic map

Sequence location

Summary Information

Automatically generated summary

See sections below for more information

The gene ORF1 is referred to in FlyBase by the symbol Stalker\ORF1 (FBgn0045962). It is a transposable_element_gene from Stalker element (D. melanogaster). It is encoded by the Stalker transposable element. An electronic pipeline based on InterPro domains suggests that it has the molecular function: RNA-directed DNA polymerase activity; RNA binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: RNA-dependent DNA replication; DNA integration. No alleles are reported. It has no annotated transcripts. Protein features are: Integrase, catalytic core; Reverse transcriptase; Ribonuclease H-like. Gene has not been localized to the genome sequence.

Recent Updates

Description

What does this section display?

This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms).

What does this section not display?

This section does not currently display links that were removed or gene model changes.

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FB2011_10

FB2012_01

All updates

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Detailed Mapping Data

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

Left of (cM)

Right of (cM)

Notes

Gene Model & Products

Comments on Gene Model

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Associated CDS (aa)

Additional Transcript Data & Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

RefSeq ID

GenBank protein

Additional Polypeptide Data & Comments

Reported size (kDa)

Comments

External Data

Linkouts

Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Reverse transcriptase (IPR000477)

Integrase, catalytic core (IPR001584)

Ribonuclease H-like (IPR012337)

Sequences Consistent with the Gene Model

DDBJ /
EMBL /
GenBank

DNA sequence

Protein sequence

Name

Q95VA1

Mapped Features

Type

Symbol & Location

Additional Notes

References

External Data

Linkouts

Crossreferences

Expression Data

Transcript Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Notes

High-Throughput Expression Data

Expression Clusters

External Data & Images

Linkouts

Alleles & Phenotypes

Summary of Allele Phenotypes

Phenotype manifest in

Allele

Classical Alleles ( 0 )

For All Classical Alleles Show

Allele of Stalker\ORF1	Class	Mutagen	Stocks	Known lesion

Alleles Carried on Transgenic Constructs ( 0 )

For All Alleles Carried on Transgenic Constructs Show

Allele of Stalker\ORF1	Class	Mutagen	Stocks	Known lesion

Aneuploid Aberrations

Transgenic Constructs & Insertions

Transgenic Constructs

Type of construct

Name

Expression data

Insertions

Type of insertions

Name

Expression data

Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )

Terms Based on Experimental Evidence ( 0 terms )

Terms Based on Predictions or Assertions ( 4 terms )

Molecular Function

CV term

Evidence

References

RNA binding

inferred from electronic annotation with InterPro:IPR000477

(FlyBase Curators et al., 2004-)

RNA-directed DNA polymerase activity

inferred from electronic annotation with InterPro:IPR000477

(FlyBase Curators et al., 2004-)

Biological Process

CV term

Evidence

References

DNA integration

inferred from electronic annotation with InterPro:IPR001584

(FlyBase Curators et al., 2004-)

RNA-dependent DNA replication

inferred from electronic annotation with InterPro:IPR000477

(FlyBase Curators et al., 2004-)

Cellular Component ( 0 terms)

Sequence Ontology: Class of Gene

transposable_element_gene

(Costas et al., 2001)

Interactions & Pathways

Summary of Physical Interactions

Protein-protein

Interacting group

Assay

References

Summary of Genetic Interactions

Interacts with

Please look at the allele data for full details of the genetic interactions

Stalker\ORF1 allele

Gene

References

External Data

Linkouts

Orthologs

Genome-wide drosophilid orthologs

Curated drosophilid orthologs

Linkouts

Stocks & Reagents

Stocks Listed in FlyBase ( 0 )

Genomic Clones ( 0 )

cDNA Clones ( 0 )

cDNA Clones, Fully Sequenced

BDGP DGC clones

Other clones

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

Other clones

RNAi & Array Information

Linkouts

Antibody Information

Other Information

Discoverer

Etymology

Identification

Relationship to Other Genes

Source for database identity of

Source for database merge of

Encoded by

Stalker

(Costas et al., 2001)

Additional comments

Other Comments

External Crossreferences & Linkouts

Sequence Crossreferences

DDBJ / EMBL / GenBank

•

UniProtKB/TrEMBL

•

Q95VA1

Other Crossreferences

InterPro domains - A database of protein families, domains, and functional sites

•

Reverse transcriptase (IPR000477)

Integrase, catalytic core (IPR001584)

Ribonuclease H-like (IPR012337)

Linkouts

Synonyms & Secondary IDs ( 2 )

Reported As

Symbol Synonym

Stalker\ORF1

Name Synonym

ORF1

Secondary FlyBase IDs

References ( 2 )

Research paper

Costas et al., 2001, J. molec. Evol. 53(3): 165--171: Structural Features of the mdg1 Lineage of the Ty3/gypsy Group of LTR Retrotransposons Inferred from the Phylogenetic Analyses of Its Open Reading Frames. [FBrf0138461]

Personal communication to FlyBase

FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms.: Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]