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Gene Dmel\CG1109

General Information
Symbol	Dmel\CG1109	Species	D. melanogaster
Name		Annotation symbol	CG1109
Feature type	protein_coding_gene	FlyBase ID	FBgn0046222
Gene Model Status	Current	Stock availability	3 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	83B8-83B8	Sequence location	3R:1,486,357..1,490,891 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG1109 (FBgn0046222). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: neuron projection morphogenesis. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: G-protein beta WD-40 repeat; WD40 repeat; WD40-repeat-containing domain; WD40/YVTN repeat-like-containing domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1623656_s_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG1109. Gene sequence location is 3R:1486357..1490891.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 83B8-83B8   Limits computationally determined from genome sequence between P{lacW}Atus1938 and P{lacW}casj1C2
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG1109 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG1109-RA FBtr0078713  NM_169091   2798   807 CG1109-RB FBtr0078714  NM_169092   2785   807
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG1109-PA   FBpp0078362   90.5   807   9.08     NP_730982   AAF51974 CG1109-PB   FBpp0078363   90.5   807   9.08     NP_730983   AAN13257
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • WD40-repeat-containing domain (IPR017986) WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) G-protein beta WD-40 repeat (IPR020472)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA392592   AA438519   AA438523   AA441337   AA539133   AA696396   AA697056   AA735590   AA820413   AA941977   AA942281   AE014297 AAF51974   AE014297 AAN13257   AI455415   AI944636   AY051695 AAK93119   BF497483   BF497564   BF502652   BF503486   BF505720   BG634690   BI162158   BI228649   BI235681   BI236452   BI239407   BI243217   BI243968   BI354708   BI376067   BI639728   CO185790   CO292071   CO322442   CO330509   CO335775   CZ478159   EC090322   EC194634   EC201084   EC223501   EC250889   EC265010   EV576086   EV576868   EV590129   GH941856   GH942018   GH942890   GH943828   GH943904   GH944687   GH945453   GH945502   GH945682   GH946202   GH946223   GH947140   GH947538   GH947699   GH947822   GH951499   GH951536   GH951987   GH952003   GH952125   GH953130   GH954229   GH955484   GH960318   GH960924   GH963820   GH964302   GH966267   GH966777   GH968496   GH968760   GH970415   GH970770   GH974448   GH975405   GH975595   GH978211   GH978889   GH978947   GH980389   GH980768   GH980963   GH981155   GH983386   GH983613   GH983808   GH983994
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VNG2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 1 -- 3   organism   (Fisher et al., 2012) Comment:maternally deposited embryonic stage 4 -- 6   organism | ubiquitous   (Fisher et al., 2012) embryonic stage 7 -- 8   anterior endoderm anlage   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 9 -- 10   anterior endoderm   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior endoderm   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 11 -- 12   anterior midgut primordium   (Fisher et al., 2012) head mesoderm   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) posterior midgut primordium   (Fisher et al., 2012) trunk mesoderm   (Fisher et al., 2012) embryonic stage 13 -- 16   embryonic brain   (Fisher et al., 2012) embryonic/larval midgut   (Fisher et al., 2012) organism | faint & ubiquitous   (Fisher et al., 2012) ventral nerve cord   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    158.2 Larval Midgut    61 Larval Hindgut    72.1 Larval Malpighian Tubules    78.2 Larval Fat Body    68 Larval Salivary Gland    94.1 Larval Trachea    50.45 Larval Carcass    72.175 Adult Head    36.3 Adult Eye    41.35 Adult Brain    57.3 Adult Thoracic-Abdominal Ganglion    55 Adult Crop    62.6 Adult Midgut    37.6 Adult Hindgut    48.1 Adult Malpighian Tubules    51.9 Adult Fat Body    81 Adult Salivary Gland    65.4 Adult Heart    49.075 Adult VirginFemale Spermatheca    83.8 Adult InseminatedFemale Spermatheca    85.1 Adult Ovary    105 Adult Testis    42.6 Adult Male Accessory Gland    99.4 Adult Carcass    39.8 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    36.3   NA  Eye    41.35   NA  Brain    57.3   158.2  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    55   NA  Crop    62.6   61  Midgut    37.6   72.1  Hindgut    48.1   78.2  Malpighian Tubules    51.9   68  Fat Body    81   94.1  Salivary Gland    65.4   NA  Heart    49.075   50.45  Trachea    NA   NA  VirginFemale Spermatheca    83.8   NA  InseminatedFemale Spermatheca    85.1   NA  Ovary    105   NA  Testis    42.6   NA  Male Accessory Gland    99.4   72.175  Carcass    39.8 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (40) central nervous system, larvae L3  (30) central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female  (49) ovary, mated 4-day female  (38) testis, mated 4-day male  (38) accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (40) central nervous system, larvae L3  30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female  (49) ovary, mated 4-day female  (38) testis, mated 4-day male  (38) accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    40 central nervous system, larvae L3    30 central nervous system, pupae P8    12 head, virgin 1-day female    8 head, virgin 4-day female    7 head, virgin 20-day female    10 head, mated 1-day female    7 head, mated 4-day female    8 head, mated 20-day female    9 head, mated 1-day male    10 head, mated 4-day male    9 head, mated 20-day male    14 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    7 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    10 digestive system, 4-day adult    9 digestive system, 20-day adult    11 fat body, larvae L3 wandering    7 fat body, white prepupae    13 fat body, pupae P8    18 carcass, larvae L3 wandering    21 carcass, 1-day adult    6 carcass, 4-day adult    9 carcass, 20-day adult    12 ovary, virgin 4-day female    49 ovary, mated 4-day female    38 testis, mated 4-day male    38 accessory gland, mated 4-day male    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed within 00-06 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (65) embryo 02-04hr  (55) embryo 04-06hr  (56) embryo 06-08hr  (51) embryo 08-10hr  (35) embryo 10-12hr  (28) embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr  (27) pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day  (33) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (65) embryo 02-04hr  (55) embryo 04-06hr  (56) embryo 06-08hr  (51) embryo 08-10hr  (35) embryo 10-12hr  28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr  27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day  (33) adult female 30day  (37) Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    65 embryo 02-04hr    55 embryo 04-06hr    56 embryo 06-08hr    51 embryo 08-10hr    35 embryo 10-12hr    28 embryo 12-14hr    18 embryo 14-16hr    18 embryo 16-18hr    12 embryo 18-20hr    12 embryo 20-22hr    12 embryo 22-24hr    11 larva L1    16 larva L2    12 larva L3 12hr old    11 larva L3 puffstage 1-2    11 larva L3 puffstage 3-6    16 larva L3 puffstage 7-9    18 white prepupae new    19 white prepupae 12hr    23 white prepupae 24hr    27 pupae 2d postWPP    19 pupae 3d postWPP    13 pupae 4d postWPP    11 adult male 01day    14 adult male 05day    16 adult male 30day    17 adult female 01day    23 adult female 05day    33 adult female 30day    37 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (43) Schneider line 2 Sg4  (41) embryonic 1182-4H  (36) embryonic GM2    19 embryonic Kc167    16 embryonic S1  (41) embryonic S3  (37) leg disc CME L1  (33) wing disc CME-W2  26 wing disc ML-DmD8  26 wing disc ML-DmD9  (34) wing disc ML-DmD16-c3  (31) wing disc ML-DmD21  (37) wing disc ML-DmD32  (46) haltere disc ML-DmD17-c3  (37) eye-antennal disc ML-DmD11  (45) antennal disc ML-DmD20-c5  (36) mixed discs ML-DmD4-c1  (35) CNS ML-DmBG1-c1  (59) CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+  (43) Schneider line 2 Sg4  (41) embryonic 1182-4H  (36) embryonic GM2    19 embryonic Kc167    16 embryonic S1  (41) embryonic S3  (37) leg disc CME L1  (33) wing disc CME-W2  26 wing disc ML-DmD8  26 wing disc ML-DmD9  (34) wing disc ML-DmD16-c3  31 wing disc ML-DmD21  (37) wing disc ML-DmD32  (46) haltere disc ML-DmD17-c3  (37) eye-antennal disc ML-DmD11  (45) antennal disc ML-DmD20-c5  (36) mixed discs ML-DmD4-c1  (35) CNS ML-DmBG1-c1  (59) CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    43 Schneider line 2 Sg4    41 embryonic 1182-4H    36 embryonic GM2    19 embryonic Kc167    16 embryonic S1    41 embryonic S3    37 leg disc CME L1    33 wing disc CME-W2    26 wing disc ML-DmD8    26 wing disc ML-DmD9    34 wing disc ML-DmD16-c3    31 wing disc ML-DmD21    37 wing disc ML-DmD32    46 haltere disc ML-DmD17-c3    37 eye-antennal disc ML-DmD11    45 antennal disc ML-DmD20-c5    36 mixed discs ML-DmD4-c1    35 CNS ML-DmBG1-c1    59 CNS ML-DmBG2-c2    24 tumorous blood cells mbn2    20 ovary fGS/OSS    22 ovary OSC    17 ovary OSS    11 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  (28) Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3  (34) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (33) Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3  (34) Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (33) Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    15 cold shock, 4-day adult    10 heat shock, 4-day adult    19 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    9 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    28 Copper 0.5 mM 12 hrs, larvae L3    12 Copper 15 mM 48 hrs, 4-day adult    11 Zinc 5 mM 12 hrs, larvae L3    11 Zinc 4.5 mM 48 hrs, 4-day adult    6 Ethanol 2.5% 3 hrs, larvae L3    34 Ethanol 5% 3 hrs, larvae L3    9 Ethanol 10% 3 hrs, larvae L3    11 Caffeine 1.5 mg/ml 4 hrs, larvae L3    9 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    33 Caffeine 25 mg/ml 48 hrs, 4-day adult    12 Paraquat 5 mM 48 hrs, 4-day adult    25 Paraquat 10 mM 48 hrs, 4-day adult    24 Rotenone 2 μg 12 hrs, larvae L3    11 Rotenone 8 μg 12 hrs, larvae L3    16 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_06 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	BDGP expression data • LD24014 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046222 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1109-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG1109 Stages(s) 4-6 Stages(s) 9-10 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pharate adult stage P15(ii), with Scer\GAL4pnr-MD237 CG1109GD7195 lethal | pupal stage, with Scer\GAL4pnr-MD237 CG1109GD7195 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG1109 Class Mutagen Stocks Known lesion CG1109DG23504 P-element activity 1 -- CG1109e00264 piggyBac transposase 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG1109 Class Mutagen Stocks Known lesion CG1109GD7195 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG1109KK100211 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes CG1109NIG.1109R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel7283 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD7195} NA P{KK100211} NA P{NIG.1109R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{wHy}CG1109DG23504 NA PBac{RB}CG1109e00264 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
neuron projection morphogenesis inferred from mutant phenotype (Sepp et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
CG1109 - CG4278 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - CG6724 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - CG7033 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - CG8258 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - CG8545 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Cpsf160 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Cpsf73 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Nurf-38 anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Sym anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Tcp-1ζ anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - Tcp-1η anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23) CG1109 - alrm anti tag coimmunoprecipitation, peptide massfingerprinting (Mintseris et al., 2009.11.23)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG1109 allele Gene References
External Data
Linkouts	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0046222 DroID - A comprehensive database of gene and protein interactions. • FBgn0046222 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40698 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q9VNG2
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6B8JZH Dipteran inclusive ortholog search EOG6BVS2Q Insect inclusive ortholog search EOG6RV1MF Arthropod inclusive ortholog search EOG6MGQPG Metazoa inclusive ortholog search EOG6D89ZT
Orthologs in Drosophila Species (EOG6B8JZH)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG1109     Drosophila simulans   Dsim\GD19809 Y   Drosophila sechellia   Dsec\GM10830 Y   Drosophila erecta   Dere\GG12984 Y   Drosophila yakuba   Dyak\GE10153 Y   Drosophila ananassae   Dana\GF16340 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA10752 Y   Drosophila persimilis   Dper\GL24512 Y   Drosophila willistoni   Dwil\GK13364 Y   Drosophila virilis   Dvir\GJ23956 Y   Drosophila mojavensis   Dmoj\GI23774 Y   Drosophila grimshawi   Dgri\GH19503 Y
Orthologs in non-Drosophila Dipterans (EOG6BVS2Q)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009887   Anopheles gambiae Malaria mosquito  Agam\AGAP001362   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ007510
Orthologs in non-Dipteran Insects (EOG6RV1MF)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC413618   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012895   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG024485   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG029852   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH10498   Atta cephalotes Leafcutter ant  Acep\ACEP23484   Atta cephalotes Leafcutter ant  Acep\ACEP23309   Camponotus floridanus Florida carpenter ant  Cflo\CFLO13191   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL16550   Linepithema humile Argentine ant  Lhum\LH16860   Pogonomyrmex barbatus Red harvester ant  Pbar\PB12345   Solenopsis invicta Red fire ant  Sinv\SINV15123   Acyrthosiphon pisum Pea aphid  Apim\ACYPI003722   Bombyx mori Silkmoth  Bmor\BGIBMGA008884   Pediculus humanus Human body louse  Phum\PHUM247160   Tribolium castaneum Red flour beetle  Tcas\TC013939
Orthologs in non-Insect Arthropods (EOG6MGQPG)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\atpB   Ixodes scapularis Deer tick  Isca\ISCW005214
Orthologs in non-Arthropod Metazoa (EOG6D89ZT)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\pfs-2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_026116gn   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015388gn   Danio rerio Zebrafish  Drer\wdr33   Xenopus tropicalis Western clawed frog  Xtro\wdr33   Gallus gallus Domestic chicken  Ggal\WDR33   Mus musculus House mouse  Mmus\Wdr33   Rattus norvegicus Norway rat  Rnor\Wdr33   Homo sapiens Human  Hsap\WDR33
Human Orthologs (1)
Gene OMIM HGNC Hsap\WDR33
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD19809 Drosophila sechellia Dsec\GM10830 Drosophila erecta Dere\GG12984 Drosophila yakuba Dyak\GE10153 Drosophila ananassae Dana\GF16340 Drosophila pseudoobscura pseudoobscura Dpse\GA10752 Drosophila persimilis Dper\GL24512 Drosophila willistoni Dwil\GK13364 Drosophila virilis Dvir\GJ23956 Drosophila mojavensis Dmoj\GI23774 Drosophila grimshawi Dgri\GH19503
Stocks & Reagents
Stocks Listed in FlyBase ( 3 )
Bloomington	20470 y1 w67c23; P{wHy}CG1109DG23504/TM3, Sb1 Ser1
Harvard	- PBac{RB}CG1109e00264
VDRC	v16186 w1118 P{GD7195}v16186
Genomic Clones ( 1 )
	BACR03P13 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 90 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD24014
Other clones	DPiM_LD24014
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT08006 AT11660 AT11760 AT18447 AT19480 AT30988 GM07605 GM09018 GM27983 LD12315 LD12320 LD12852 LD16233 LD17221 LD21583 LD26389 LD27350 RE26258 RE31588 RE32510 RE35885 RE40784 RE41792 RE63992 SD22388
Other clones	62325 71187 192289 194082 542718 bs02h09 CK01.10A.E6 Dmel_dig_004981_0690_2242 Dmel_dig_008521_0684_0668 Dmel_neb_010624_0427_2498 EK012151 EK188138 EK199122 EK295436 EN11157 RE01551 RP004096329 RP004118010 RP004134332 RP004149310 RP004150218 RP004150643 RP004157495 RP004165045 RP004203166 RP004204688 RP004205625 RP004206967 RP004208940 RP004209111 RP004211010 RP004212793 RP004221690 RP004224767 RP004227564 RP004230198 RP004230311 RP004235356 RP004235941 RP004237775 RP004238924 RP004241520 RP004245621 RP004247045 RP004253934 RP004255451 RP004255463 RP004260168 RP004261730 RP004262806 RP004339182 RP004343278 RP004362717 RP004422258 RP004428243 RP004450487 RP004454092 RP004475029 RP004481553 RP004505332 RP004511148 RP004540330 RP004546474
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0046222 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40698
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: BcDNA:LD24014 CG1109 (FlyBase, 1996-)
Additional comments	Source for merge of BcDNA:LD24014 CG1109 was a shared cDNA (LD24014) (date:020402). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_169091 NM_169092 RefSeq (Proteins) • NP_730982 NP_730983 DDBJ / EMBL / GenBank • AA820413 AAF51974 AAK93119 AAN13257 AI455415 AI944636 AY051695 CZ478159 Entrez Gene - A searchable database of RefSeq genes. • 40698 UniProtKB/TrEMBL • Q9VNG2
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • WD40-repeat-containing domain (IPR017986) WD40/YVTN repeat-like-containing domain (IPR015943) WD40 repeat (IPR001680) G-protein beta WD-40 repeat (IPR020472) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • LD24014
Linkouts
	DPiM - DPiM, Drosophila Protein interaction Map • FBgn0046222 DroID - A comprehensive database of gene and protein interactions. • FBgn0046222 DRSC - Results from RNAi screens. • FBgn0046222 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046222 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG1109-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0046222 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40698 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 40698 modMine - Data generated by the modENCODE project. • FBgn0046222 SignaLink - A protein-protein and protein-miRNA interaction database with multi-layered structure and multiple confidence scores. • Q9VNG2
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BcDNA:LD24014   CG1109 (Keleman et al., 2009.8.5, Doumanis et al., 2009, Yano et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Sepp et al., 2008)
Name Synonym
Secondary FlyBase IDs
	FBgn0037361
References ( 23 )
Generate a list of	All references relating to this gene ( 23 )
List References by type	Research paper  ( 4 ) Supplementary material  ( 3 ) Personal communication to FlyBase  ( 10 ) FlyBase analysis  ( 2 ) Stock list  ( 1 ) Website  ( 1 ) Curated genome annotation  ( 2 )
Recent research papers ( 1 )
	Yano et al., 2012, J. Neurogenet. 26(1): 53--63 Identification of proteasome components required for apical localization of chaoptin using functional genomics. [FBrf0217843] Show all research papers ...