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Gene Dmel\CG5938

General Information
Symbol	Dmel\CG5938	Species	D. melanogaster
Name		Annotation symbol	CG5938
Feature type	protein_coding_gene	FlyBase ID	FBgn0046247
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	97F1-97F1	Sequence location	3R:23,100,429..23,103,140 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG5938 (FBgn0046247). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has 4 annotated transcripts and 4 annotated polypeptides. Protein features are: Golgin subfamily A member 7/ERF4. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633997_s_at completely aligns to an exonic region common to each of the 5 FlyBase-annotated transcript isoforms of CG5938. Gene sequence location is 3R:23100429..23103140.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA15923 BKN28840
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 97F1-97F1   Limits computationally determined from genome sequence between P{PZ}sda03884 and P{PZ}btzrL203
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG5938 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG5938-RA FBtr0085161  NM_170331   1253   168 CG5938-RB FBtr0085159  NM_170332   1488   168 CG5938-RC FBtr0085162  NM_143296   1528   168 CG5938-RD FBtr0085160  NM_170333   1760   168
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG5938-PA   FBpp0084531   19.3   168   5.99     NP_733210   AAN14108 CG5938-PB   FBpp0084529   19.3   168   5.99     NP_733211   AAN14109 CG5938-PC   FBpp0084532   19.3   168   5.99     NP_651553   AAF56693 CG5938-PD   FBpp0084530   19.3   168   5.99     NP_733212   AAN14110
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Golgin subfamily A member 7/ERF4 (IPR019383)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56693   AE014297 AAN14108   AE014297 AAN14109   AE014297 AAN14110   AI062125   AI512125   AI520117   AW943493   AY069631 AAL39776   BE662038   BF486635   BF489593   BF492064   BF497765   BF501664   BF504456   BG632006   BI171686   BI214306   BI216835   BI227617   BI369034   BI369869   BI572031   BI581434   BI606605   BI606934   BI617655   CA806455   CA806725   CA806883   CK657814   CO183490   CO276182   CO291241   CO324115   CZ467779   EC074735   EC194675   ES690392   ES690400   ES690410   ES690411   ES690412   ES690415   ES690422   ES690429   EV600439   GH750039   GH750717   GH752012   GH752919   GH757416   GH772017   GH773404   GH773528   GH780864   GH785278   GH792716   GH798651   GH804652   GH805415   GH805866   GH807000   GH807817   GH807923   GH810740   GH811526   GH813289   GH818334   GH820274   GH824087   GH825730   GH826262   GH827737   GH828654   GH830470   GH831635   GH833592   GH840272   GH852074   GH853400   GH855901   GH856850   GH858159   GH862575   GH865056   GH866014   GH867364   GH867446   GH872913   GH878977   GH884217   GH885587   GH886616   GH894083   GH898207   GH899607   GH900731   GH903669   GH906215   GH907857   GH907889   GH910545   GH914016   GH919245   GH920723   GH931802   GH933369   GH933620   GH933698   GH935291   GH941653   GH942177   GH944826   GH945009   GH945741   GH945857   GH946323   GH946728   GH947369   GH949903   GH950790   GH951266   GH953960   GH957614   GH962240   GH962670   GH966230   GH968307   GH968504   GH971527   GH976433   GH976911   GH977235   GH979490   GH979664   GH980555   GH980884   GH983812
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8T015 Q0KI06 A8JRE5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0046247    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0046247 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0046247 expression level Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3915) embryo 02-04hr  (2191) embryo 04-06hr  (2105) embryo 06-08hr  (2140) embryo 08-10hr  (2219) embryo 10-12hr  (2279) embryo 12-14hr  (1800) embryo 14-16hr  (2199) embryo 16-18hr  (2895) embryo 18-20hr  (2141) embryo 20-22hr  (1298) embryo 22-24hr  (1549) larva L1  (859) larva L2  (754) larva L3 12hr old  (730) larva L3 puffstage 1-2  (1069) larva L3 puffstage 3-6  (1723) larva L3 puffstage 7-9  (3340) white prepupae new  (5664) white prepupae 12hr  (6144) white prepupae 24hr  (4151) pupae 2d postWPP  (3343) pupae 3d postWPP  (2494) pupae 4d postWPP  (3798) adult male 01day  (2586) adult male 05day  (3048) adult male 30day  (3019) adult female 01day  (2327) adult female 05day  (2301) adult female 30day  (2538) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3915) embryo 02-04hr  (2191) embryo 04-06hr  (2105) embryo 06-08hr  (2140) embryo 08-10hr  (2219) embryo 10-12hr  (2279) embryo 12-14hr  (1800) embryo 14-16hr  (2199) embryo 16-18hr  (2895) embryo 18-20hr  (2141) embryo 20-22hr    1298 embryo 22-24hr  (1549) larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6  (1723) larva L3 puffstage 7-9  (3340) white prepupae new  (5664) white prepupae 12hr  (6144) white prepupae 24hr  (4151) pupae 2d postWPP  (3343) pupae 3d postWPP  (2494) pupae 4d postWPP  (3798) adult male 01day  (2586) adult male 05day  (3048) adult male 30day  (3019) adult female 01day  (2327) adult female 05day  (2301) adult female 30day  (2538) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0046247 expression level Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3915) embryo 02-04hr  (2191) embryo 04-06hr  (2105) embryo 06-08hr  (2140) embryo 08-10hr  (2219) embryo 10-12hr  (2279) embryo 12-14hr  (1800) embryo 14-16hr  (2199) embryo 16-18hr  (2895) embryo 18-20hr  (2141) embryo 20-22hr  (1298) embryo 22-24hr  (1549) larva L1  (859) larva L2  (754) larva L3 12hr old  (730) larva L3 puffstage 1-2  (1069) larva L3 puffstage 3-6  (1723) larva L3 puffstage 7-9  (3340) white prepupae new  (5664) white prepupae 12hr  (6144) white prepupae 24hr  (4151) pupae 2d postWPP  (3343) pupae 3d postWPP  (2494) pupae 4d postWPP  (3798) adult male 01day  (2586) adult male 05day  (3048) adult male 30day  (3019) adult female 01day  (2327) adult female 05day  (2301) adult female 30day  (2538) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3915) embryo 02-04hr  2191 embryo 04-06hr  2105 embryo 06-08hr  2140 embryo 08-10hr  2219 embryo 10-12hr  2279 embryo 12-14hr  1800 embryo 14-16hr  2199 embryo 16-18hr  (2895) embryo 18-20hr  2141 embryo 20-22hr    1298 embryo 22-24hr  1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6  1723 larva L3 puffstage 7-9  (3340) white prepupae new  (5664) white prepupae 12hr  (6144) white prepupae 24hr  (4151) pupae 2d postWPP  (3343) pupae 3d postWPP  (2494) pupae 4d postWPP  (3798) adult male 01day  (2586) adult male 05day  (3048) adult male 30day  (3019) adult female 01day  2327 adult female 05day  2301 adult female 30day  (2538) Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3915 embryo 02-04hr    2191 embryo 04-06hr    2105 embryo 06-08hr    2140 embryo 08-10hr    2219 embryo 10-12hr    2279 embryo 12-14hr    1800 embryo 14-16hr    2199 embryo 16-18hr    2895 embryo 18-20hr    2141 embryo 20-22hr    1298 embryo 22-24hr    1549 larva L1    859 larva L2    754 larva L3 12hr old    730 larva L3 puffstage 1-2    1069 larva L3 puffstage 3-6    1723 larva L3 puffstage 7-9    3340 white prepupae new    5664 white prepupae 12hr    6144 white prepupae 24hr    4151 pupae 2d postWPP    3343 pupae 3d postWPP    2494 pupae 4d postWPP    3798 adult male 01day    2586 adult male 05day    3048 adult male 30day    3019 adult female 01day    2327 adult female 05day    2301 adult female 30day    2538 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0046247    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0046247 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0046247 expression level Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules  (696.4) Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0046247 expression level Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules  696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    241.2   NA  Eye    287.675   NA  Brain    436.1   174.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    401.9   NA  Crop    363.2   126.1  Midgut    269.9   139.4  Hindgut    403.2   252.5  Malpighian Tubules    696.4   214  Fat Body    214.7   103.5  Salivary Gland    356   NA  Heart    267.8   193.7  Trachea    NA   NA  VirginFemale Spermatheca    183.3   NA  InseminatedFemale Spermatheca    179.9   NA  Ovary    338   NA  Testis    318.3   NA  Male Accessory Gland    105.7   189.125  Carcass    247.9 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_27
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046247 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5938-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG5938c02218 viable, with Scer\GAL4pnr-MD237 CG5938GD8652 Sterility Allele fertile CG5938c02218 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG5938 Class Mutagen Stocks Known lesion CG5938c02218 piggyBac transposase 2 -- CG5938DG06203 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG5938 Class Mutagen Stocks Known lesion CG5938GD8652 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG5938KK108840 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8652} NA P{KK108840} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{wHy}CG5938DG06203 NA PBac{PB}CG5938c02218 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG5938 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68176 DroID - A comprehensive database of gene and protein interactions. • FBgn0046247 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43290
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16282 Dere\GG11542 Dgri\GH19527 Dmoj\GI22259 Dper\GL24487 Dpse\GA19245 Dsec\GM10384 Dsim\GD15136 Dvir\GJ24049 Dwil\GK22577 Dyak\GE23730
Curated drosophilid orthologs	Dpse\GA19245
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL008924-PA Aedes aegypti (mosquito) AGAP001278-PA Anopheles gambiae (mosquito) XP_393012.2 Apis mellifera (honey bee) XP_001947260.1 Acyrthosiphon pisum (pea aphid) 69522 Branchiostoma floridae (lancelet) XP_001895823.1 Brugia malayi (roundworm nematode) BGIBMGA010233-PA Bombyx mori (silk worm) ENSBTAP00000027751 Bos taurus (bovine) CN30759 Caenorhabditis brenneri (small nematode) CBP36853 Caenorhabditis briggsae (nematode) CE26024 Caenorhabditis elegans (worm) ENSCAFP00000003020 Canis familiaris (dog) ENSCINP00000010088 Ciona intestinalis (sea squirt) JA01095 Caenorhabditis japonica (nematode) CPIJ013126 Culex pipens (mosquito) ENSCPOP00000020535 Cavia porcellus (guinea pig) RP23259 Caenorhabditis remanei (nematode) 135139 Capitella spl (polychaete worm) 313493 Daphnia pulex (daphnia) ENSDARP00000069642 Danio rerio (zebra fish) ENSECAP00000011797 Equus caballus (horse) ENSGACP00000022601 Gymnopilus aculeatus (mushroom) ENSGALP00000022538 Gallus gallus (chicken) 109002 Hypsipyla robusta (cedar shoot borer) ENSP00000263921 Homo sapiens (human) 217780 Lottia gigantea (owl limpet) ENSMODP00000025855 Monodelphis domestica (gray opossum) ENSMMUP00000008416 Macaca mulatta (rhesus monkey) ENSMUSP00000074903 Mus musculus (house mouse) 246680 Nematostella vectensis (starlet anemone) XP_001607829.1 Nasonia vitripennis (wasp) ENSORLP00000005472 Oryzias latipes (japanese killifish) PHUM011057-PA Pediculus humanus (human body louse) ENSPPYP00000016495 Pongo pygmaeus (orangutan) ENSPTRP00000027633 Pan troglodytes (chimpanzee) ENSRNOP00000003085 Rattus norvegicus (norway rat) Smp_062550 Schistosoma mansoni (trematode parasite) XP_001195418.1 Strongylocentrotus purpuratus (purple sea urchin) 32928 Trichoplax adhaerens (metazoa) XP_966761.1 Tribolium castaneum (red flour beetle) ENSTRUP00000029001 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000025544 Xenopus tropicalis (frog) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12058 LH25160 FBgn0240888 FBgn0224554 FBgn0211136 FBgn0186807 FBgn0165334 JGI_V11_313493 FBgn0079242 FBgn0162076 FBgn0144987 FBgn0126992 FBgn0103839 FBgn0093304 CPIJ013126 BGIBMGA010233 ACYPI009311 GB14933 AGAP001278 AAEL008924 PB23934 PHUM574520 GLEAN_01450
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	10862 w1118; PBac{PB}CG5938c02218 21616 y1 w67c23; P{wHy}CG5938DG06203
Harvard	- PBac{PB}CG5938c02218
VDRC	v106500 P{KK108840}VIE-260B v32418 w1118; P{GD8652}v32418 v32417 w1118; P{GD8652}v32417/CyO
Genomic Clones ( 1 )
	BACR02B05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 125 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD40095
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05820 AT12050 AT17055 AT21089 AT25669 AT28937 LD43854 LP24403 RE13514 RE20074 RE24117 RE24719 RE55115 RE56196 RH07366 RH18864 RH48054 RH73207 RH73793
Other clones	65399 bs15a11 CK01.12A.G4 Dmel_neb_003348_0884_3558 EC25815 EK076903 EK119904 EK192562 ESG013b.E21_H11 ESG014d.E21_B05 ESG015b.E21_H06 GH01210 RC0-DA0008-130700-013-H06 RP003003463 RP003005379 RP003007040 RP003014388 RP003025140 RP003031665 RP003032771 RP003037649 RP003048255 RP003052345 RP003067119 RP003067517 RP003076869 RP003080464 RP003083449 RP003092193 RP003098229 RP003103076 RP003110707 RP003111390 RP003113388 RP003115814 RP003120756 RP003131339 RP003131400 RP003132682 RP003134763 RP003158167 RP003166338 RP003172506 RP003200807 RP003201238 RP003205708 RP003214242 RP003231067 RP003233347 RP003235232 RP003270653 RP003275134 RP003282824 RP003283247 RP003295626 RP003296079 RP003302777 RP003303837 RP003330345 RP003331698 RP003372937 RP003390178 RP003394817 RP003423206 RP003474029 RP003478474 RP003498305 RP003499277 RP003503651 RP003512810 RP003520885 RP003526789 RP003532067 RP003575123 RP003607711 RP003624487 RP003670769 RP004054553 RP004121870 RP004161809 RP004164265 RP004178409 RP004206947 RP004210155 RP004217466 RP004221182 RP004225663 RP004227853 RP004235925 RP004236578 RP004236863 RP004239720 RP004249141 RP004249782 RP004258693 RP004265267 RP004298756 RP004307119 RP004319778 RP004409996 RP004454321 RP004456873 RP004482098 RP004523475 RP004526594
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0046247 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43290
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: BEST:LD40095 CG5938 (FlyBase, 1996-)
Additional comments	Source for merge of BEST:LD40095 CG5938 was shared cDNA (LD40095) (date:030422). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143296 NM_170331 NM_170332 NM_170333 RefSeq (Proteins) • NP_651553 NP_733210 NP_733211 NP_733212 DDBJ / EMBL / GenBank • AAF56693 AAL39776 AAN14108 AAN14109 AAN14110 ABW08785 AI520117 AW943493 AY069631 CZ467779 Entrez Gene - A searchable database of RefSeq genes. • 43290 UniProtKB/TrEMBL • A8JRE5 Q0KI06 Q8T015
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Golgin subfamily A member 7/ERF4 (IPR019383)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68176 DroID - A comprehensive database of gene and protein interactions. • FBgn0046247 DRSC - Results from RNAi screens. • FBgn0046247 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046247 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5938-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0046247 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43290 InParanoid A subset of ortholog calls from InParanoid. • AAEL008924-PA Aedes aegypti (mosquito) AGAP001278-PA Anopheles gambiae (mosquito) XP_393012.2 Apis mellifera (honey bee) XP_001947260.1 Acyrthosiphon pisum (pea aphid) 69522 Branchiostoma floridae (lancelet) XP_001895823.1 Brugia malayi (roundworm nematode) BGIBMGA010233-PA Bombyx mori (silk worm) ENSBTAP00000027751 Bos taurus (bovine) CN30759 Caenorhabditis brenneri (small nematode) CBP36853 Caenorhabditis briggsae (nematode) CE26024 Caenorhabditis elegans (worm) ENSCAFP00000003020 Canis familiaris (dog) ENSCINP00000010088 Ciona intestinalis (sea squirt) JA01095 Caenorhabditis japonica (nematode) CPIJ013126 Culex pipens (mosquito) ENSCPOP00000020535 Cavia porcellus (guinea pig) RP23259 Caenorhabditis remanei (nematode) 135139 Capitella spl (polychaete worm) 313493 Daphnia pulex (daphnia) ENSDARP00000069642 Danio rerio (zebra fish) ENSECAP00000011797 Equus caballus (horse) ENSGACP00000022601 Gymnopilus aculeatus (mushroom) ENSGALP00000022538 Gallus gallus (chicken) 109002 Hypsipyla robusta (cedar shoot borer) ENSP00000263921 Homo sapiens (human) 217780 Lottia gigantea (owl limpet) ENSMODP00000025855 Monodelphis domestica (gray opossum) ENSMMUP00000008416 Macaca mulatta (rhesus monkey) ENSMUSP00000074903 Mus musculus (house mouse) 246680 Nematostella vectensis (starlet anemone) XP_001607829.1 Nasonia vitripennis (wasp) ENSORLP00000005472 Oryzias latipes (japanese killifish) PHUM011057-PA Pediculus humanus (human body louse) ENSPPYP00000016495 Pongo pygmaeus (orangutan) ENSPTRP00000027633 Pan troglodytes (chimpanzee) ENSRNOP00000003085 Rattus norvegicus (norway rat) Smp_062550 Schistosoma mansoni (trematode parasite) XP_001195418.1 Strongylocentrotus purpuratus (purple sea urchin) 32928 Trichoplax adhaerens (metazoa) XP_966761.1 Tribolium castaneum (red flour beetle) ENSTRUP00000029001 Takifugu rubripes (pufferfish Takifugu) ENSXETP00000025544 Xenopus tropicalis (frog) InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43290 modMine - Data generated by the modENCODE project. • FBgn0046247 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • NV12058 LH25160 FBgn0240888 FBgn0224554 FBgn0211136 FBgn0186807 FBgn0165334 JGI_V11_313493 FBgn0079242 FBgn0162076 FBgn0144987 FBgn0126992 FBgn0103839 FBgn0093304 CPIJ013126 BGIBMGA010233 ACYPI009311 GB14933 AGAP001278 AAEL008924 PB23934 PHUM574520 GLEAN_01450
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BEST:LD40095   CG5938 (Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0039506
References ( 13 )
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Myrick et al., 2008.12.2, Alignment of P{wHy} collection to current genome. Alignment of P{wHy} collection to current genome. [FBrf0206273] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Oliver, 2001.8.16, File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation FlyBase curation. [FBrf0105495]
Computer file	Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. Genomic mapping of Exelixis insertion collection. [FBrf0184340] Gene Disruption Project members, 2001-, [title not yet available] [title not yet available] [FBrf0132177] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]