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Gene Dmel\CG5938

General Information
Symbol	Dmel\CG5938	Species	D. melanogaster
Name		Annotation symbol	CG5938
Feature type	protein_coding_gene	FlyBase ID	FBgn0046247
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	97F1-97F1	Sequence location	3R:23,100,516..23,103,140 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG5938 (FBgn0046247). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. The biological processes in which it is involved are not known. 5 alleles are reported. No phenotypic data is available. It has 5 annotated transcripts and 5 annotated polypeptides. Protein features are: Golgin subfamily A member 7/ERF4. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1633997_s_at completely aligns to an exonic region common to each of the 5 FlyBase-annotated transcript isoforms of CG5938. Gene sequence location is 3R:23100516..23103140.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 97F1-97F1   Limits computationally determined from genome sequence between P{PZ}sda03884 and P{PZ}btzrL203
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG5938 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47 Low-frequency RNA-Seq exon junction(s) not annotated.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG5938-RA FBtr0085161  NM_170331   1256   168 CG5938-RB FBtr0085159  NM_170332   1401   168 CG5938-RC FBtr0085162  NM_143296   1531   168 CG5938-RD FBtr0085160  NM_170333   1673   168 CG5938-RF FBtr0334729  NM_001104477   1615   168
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG5938-PA   FBpp0084531   19.3   168   5.99     NP_733210   AAN14108 CG5938-PB   FBpp0084529   19.3   168   5.99     NP_733211   AAN14109 CG5938-PC   FBpp0084532   19.3   168   5.99     NP_651553   AAF56693 CG5938-PD   FBpp0084530   19.3   168   5.99     NP_733212   AAN14110 CG5938-PF   FBpp0306777   19.3   168   5.99     NP_001097947   ABW08785
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Golgin subfamily A member 7/ERF4 (IPR019383)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56693   AE014297 AAN14108   AE014297 AAN14109   AE014297 AAN14110   AE014297 ABW08785   AI062125   AI512125   AI520117   AW943493   AY069631 AAL39776   BE662038   BF486635   BF489593   BF492064   BF497765   BF501664   BF504456   BG632006   BI171686   BI214306   BI216835   BI227617   BI369034   BI369869   BI572031   BI581434   BI606605   BI606934   BI617655   CA806455   CA806725   CA806883   CK657814   CO183490   CO276182   CO291241   CO324115   CZ467779   EC074735   EC194675   ES690392   ES690400   ES690410   ES690411   ES690412   ES690415   ES690422   ES690429   EV600439   GH750039   GH750717   GH752012   GH752919   GH757416   GH772017   GH773404   GH773528   GH780864   GH785278   GH792716   GH798651   GH804652   GH805415   GH805866   GH807000   GH807817   GH807923   GH810740   GH811526   GH813289   GH818334   GH820274   GH824087   GH825730   GH826262   GH827737   GH828654   GH830470   GH831635   GH833592   GH840272   GH852074   GH853400   GH855901   GH856850   GH858159   GH862575   GH865056   GH866014   GH867364   GH867446   GH872913   GH878977   GH884217   GH885587   GH886616   GH894083   GH898207   GH899607   GH900731   GH903669   GH906215   GH907857   GH907889   GH910545   GH914016   GH919245   GH920723   GH931802   GH933369   GH933620   GH933698   GH935291   GH941653   GH942177   GH944826   GH945009   GH945741   GH945857   GH946323   GH946728   GH947369   GH949903   GH950790   GH951266   GH953960   GH957614   GH962240   GH962670   GH966230   GH968307   GH968504   GH971527   GH976433   GH976911   GH977235   GH979490   GH979664   GH980555   GH980884   GH983812
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q0KI06 Q8T015 A8JRE5
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult Malpighian tubules. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval/adult central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules  (696.4) Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules  696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    174.475 Larval Midgut    126.1 Larval Hindgut    139.4 Larval Malpighian Tubules    252.5 Larval Fat Body    214 Larval Salivary Gland    103.5 Larval Trachea    193.7 Larval Carcass    189.125 Adult Head    241.2 Adult Eye    287.675 Adult Brain    436.1 Adult Thoracic-Abdominal Ganglion    401.9 Adult Crop    363.2 Adult Midgut    269.9 Adult Hindgut    403.2 Adult Malpighian Tubules    696.4 Adult Fat Body    214.7 Adult Salivary Gland    356 Adult Heart    267.8 Adult VirginFemale Spermatheca    183.3 Adult InseminatedFemale Spermatheca    179.9 Adult Ovary    338 Adult Testis    318.3 Adult Male Accessory Gland    105.7 Adult Carcass    247.9 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    241.2   NA  Eye    287.675   NA  Brain    436.1   174.475  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    401.9   NA  Crop    363.2   126.1  Midgut    269.9   139.4  Hindgut    403.2   252.5  Malpighian Tubules    696.4   214  Fat Body    214.7   103.5  Salivary Gland    356   NA  Heart    267.8   193.7  Trachea    NA   NA  VirginFemale Spermatheca    183.3   NA  InseminatedFemale Spermatheca    179.9   NA  Ovary    338   NA  Testis    318.3   NA  Male Accessory Gland    105.7   189.125  Carcass    247.9 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (29) central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male  (29) head, mated 20-day male  (32) salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (35) digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female  26 ovary, mated 4-day female  (29) testis, mated 4-day male  (40) accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male  29 head, mated 20-day male  32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae  (35) digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female  26 ovary, mated 4-day female  29 testis, mated 4-day male  (40) accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    29 central nervous system, larvae L3    15 central nervous system, pupae P8    14 head, virgin 1-day female    15 head, virgin 4-day female    21 head, virgin 20-day female    13 head, mated 1-day female    16 head, mated 4-day female    18 head, mated 20-day female    12 head, mated 1-day male    20 head, mated 4-day male    29 head, mated 20-day male    32 salivary gland, larvae L3 wandering    5 salivary gland, white prepupae    35 digestive system, larvae L3 wandering    17 digestive system, 1-day adult    14 digestive system, 4-day adult    12 digestive system, 20-day adult    13 fat body, larvae L3 wandering    5 fat body, white prepupae    18 fat body, pupae P8    17 carcass, larvae L3 wandering    15 carcass, 1-day adult    15 carcass, 4-day adult    17 carcass, 20-day adult    15 ovary, virgin 4-day female    26 ovary, mated 4-day female    29 testis, mated 4-day male    40 accessory gland, mated 4-day male    7 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of moderate expression. Peak expression observed during early pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (50) embryo 02-04hr  (28) embryo 04-06hr  (27) embryo 06-08hr  (27) embryo 08-10hr  (29) embryo 10-12hr  (29) embryo 12-14hr    23 embryo 14-16hr  (28) embryo 16-18hr  (37) embryo 18-20hr  (27) embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9  (43) white prepupae new  (73) white prepupae 12hr  (79) white prepupae 24hr  (53) pupae 2d postWPP  (43) pupae 3d postWPP  (32) pupae 4d postWPP  (49) adult male 01day  (33) adult male 05day  (39) adult male 30day  (39) adult female 01day  (30) adult female 05day  (29) adult female 30day  (32) Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (50) embryo 02-04hr  28 embryo 04-06hr  27 embryo 06-08hr  27 embryo 08-10hr  29 embryo 10-12hr  29 embryo 12-14hr    23 embryo 14-16hr  28 embryo 16-18hr  (37) embryo 18-20hr  27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9  (43) white prepupae new  (73) white prepupae 12hr  (79) white prepupae 24hr  (53) pupae 2d postWPP  (43) pupae 3d postWPP  32 pupae 4d postWPP  (49) adult male 01day  (33) adult male 05day  (39) adult male 30day  (39) adult female 01day  30 adult female 05day  29 adult female 30day  32 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    50 embryo 02-04hr    28 embryo 04-06hr    27 embryo 06-08hr    27 embryo 08-10hr    29 embryo 10-12hr    29 embryo 12-14hr    23 embryo 14-16hr    28 embryo 16-18hr    37 embryo 18-20hr    27 embryo 20-22hr    17 embryo 22-24hr    20 larva L1    11 larva L2    10 larva L3 12hr old    9 larva L3 puffstage 1-2    14 larva L3 puffstage 3-6    22 larva L3 puffstage 7-9    43 white prepupae new    73 white prepupae 12hr    79 white prepupae 24hr    53 pupae 2d postWPP    43 pupae 3d postWPP    32 pupae 4d postWPP    49 adult male 01day    33 adult male 05day    39 adult male 30day    39 adult female 01day    30 adult female 05day    29 adult female 30day    32 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167  (27) embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167  27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    25 Schneider line 2 Sg4    13 embryonic 1182-4H    16 embryonic GM2    9 embryonic Kc167    27 embryonic S1    17 embryonic S3    10 leg disc CME L1    15 wing disc CME-W2    14 wing disc ML-DmD8    16 wing disc ML-DmD9    17 wing disc ML-DmD16-c3    18 wing disc ML-DmD21    15 wing disc ML-DmD32    11 haltere disc ML-DmD17-c3    13 eye-antennal disc ML-DmD11    10 antennal disc ML-DmD20-c5    14 mixed discs ML-DmD4-c1    19 CNS ML-DmBG1-c1    21 CNS ML-DmBG2-c2    17 tumorous blood cells mbn2    16 ovary fGS/OSS    18 ovary OSC    14 ovary OSS    6 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  (29) Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult  26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3  (32) Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  (32) Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  (32) Paraquat 10 mM 48 hrs, 4-day adult  (37) Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult  29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult  26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3  32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult  32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult  32 Paraquat 10 mM 48 hrs, 4-day adult  (37) Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    13 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    10 Cadmium 50 mM 12 hrs, larvae L3    15 Cadmium 50 mM 48 hrs, 4-day adult    18 Cadmium 100 mM 48 hrs, 4-day adult    29 Copper 0.5 mM 12 hrs, larvae L3    8 Copper 15 mM 48 hrs, 4-day adult    26 Zinc 5 mM 12 hrs, larvae L3    7 Zinc 4.5 mM 48 hrs, 4-day adult    25 Ethanol 2.5% 3 hrs, larvae L3    32 Ethanol 5% 3 hrs, larvae L3    10 Ethanol 10% 3 hrs, larvae L3    9 Caffeine 1.5 mg/ml 4 hrs, larvae L3    8 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    32 Caffeine 25 mg/ml 48 hrs, 4-day adult    17 Paraquat 5 mM 48 hrs, 4-day adult    32 Paraquat 10 mM 48 hrs, 4-day adult    37 Rotenone 2 μg 12 hrs, larvae L3    8 Rotenone 8 μg 12 hrs, larvae L3    9 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_03
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046247 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5938-RB
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG5938c02218 viable, with Scer\GAL4pnr-MD237 CG5938GD8652 Sterility Allele fertile CG5938c02218 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG5938 Class Mutagen Stocks Known lesion CG5938c02218 piggyBac transposase 2 -- CG5938DG06203 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG5938 Class Mutagen Stocks Known lesion CG5938GD8652 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG5938KK108840 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG5938NIG.5938R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8652} NA P{KK108840} NA P{NIG.5938R} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions P{wHy}CG5938DG06203 NA PBac{PB}CG5938c02218 NA
Gene Ontology: Function, Process & Cellular Component ( 0 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG5938 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 68176 DroID - A comprehensive database of gene and protein interactions. • FBgn0046247 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43290
Orthologs
OrthoDB Orthologs (42) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6BRX68 Dipteran inclusive ortholog search EOG6R2443 Insect inclusive ortholog search EOG6NCK99 Arthropod inclusive ortholog search EOG6P5HSQ Metazoa inclusive ortholog search EOG60SC9M
Orthologs in Drosophila Species (EOG6BRX68)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG5938     Drosophila simulans   Dsim\GD15136 Y   Drosophila sechellia   Dsec\GM10384 Y   Drosophila erecta   Dere\GG11542 Y   Drosophila yakuba   Dyak\GE23730 Y   Drosophila ananassae   Dana\GF16282 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA19245 Y   Drosophila persimilis   Dper\GL24487 Y   Drosophila willistoni   Dwil\GK22577 Y   Drosophila virilis   Dvir\GJ24049 Y   Drosophila mojavensis   Dmoj\GI22259 Y   Drosophila grimshawi   Dgri\GH19527 Y
Orthologs in non-Drosophila Dipterans (EOG6R2443)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008924   Anopheles gambiae Malaria mosquito  Agam\AGAP001278   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ013126
Orthologs in non-Dipteran Insects (EOG6NCK99)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC409505   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG004586   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH11504   Atta cephalotes Leafcutter ant  Acep\ACEP23859   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21158   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL13849   Linepithema humile Argentine ant  Lhum\LH25160   Pogonomyrmex barbatus Red harvester ant  Pbar\PB23934   Solenopsis invicta Red fire ant  Sinv\SINV16243   Acyrthosiphon pisum Pea aphid  Apim\ACYPI009311   Bombyx mori Silkmoth  Bmor\BGIBMGA010233   Pediculus humanus Human body louse  Phum\PHUM574520   Tribolium castaneum Red flour beetle  Tcas\TC001450
Orthologs in non-Insect Arthropods (EOG6P5HSQ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Rgp1
Orthologs in non-Arthropod Metazoa (EOG60SC9M)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\tag-266   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_025638gn   Danio rerio Zebrafish  Drer\chic2   Danio rerio Zebrafish  Drer\chic1   Xenopus tropicalis Western clawed frog  Xtro\chic2   Gallus gallus Domestic chicken  Ggal\CHIC1   Gallus gallus Domestic chicken  Ggal\CHIC2   Mus musculus House mouse  Mmus\Chic2   Mus musculus House mouse  Mmus\ENSMUSG00000031327   Rattus norvegicus Norway rat  Rnor\Chic2   Rattus norvegicus Norway rat  Rnor\Chic1   Homo sapiens Human  Hsap\CHIC2   Homo sapiens Human  Hsap\CHIC1
Human Orthologs (2)
Gene OMIM HGNC Hsap\CHIC2     Hsap\CHIC1
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD15136 Drosophila sechellia Dsec\GM10384 Drosophila erecta Dere\GG11542 Drosophila yakuba Dyak\GE23730 Drosophila ananassae Dana\GF16282 Drosophila pseudoobscura pseudoobscura Dpse\GA19245 Drosophila persimilis Dper\GL24487 Drosophila willistoni Dwil\GK22577 Drosophila virilis Dvir\GJ24049 Drosophila mojavensis Dmoj\GI22259 Drosophila grimshawi Dgri\GH19527
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	10862 w1118; PBac{PB}CG5938c02218 21616 y1 w67c23; P{wHy}CG5938DG06203
Harvard	- PBac{PB}CG5938c02218
VDRC	v106500 P{KK108840}VIE-260B v32418 w1118; P{GD8652}v32418 v32417 w1118; P{GD8652}v32417/CyO
Genomic Clones ( 1 )
	BACR02B05 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 125 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	LD40095
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT05820 AT12050 AT17055 AT21089 AT25669 AT28937 LD43854 LP24403 RE13514 RE20074 RE24117 RE24719 RE55115 RE56196 RH07366 RH18864 RH48054 RH73207 RH73793
Other clones	65399 bs15a11 CK01.12A.G4 Dmel_neb_003348_0884_3558 EC25815 EK076903 EK119904 EK192562 ESG013b.E21_H11 ESG014d.E21_B05 ESG015b.E21_H06 GH01210 RC0-DA0008-130700-013-H06 RP003003463 RP003005379 RP003007040 RP003014388 RP003025140 RP003031665 RP003032771 RP003037649 RP003048255 RP003052345 RP003067119 RP003067517 RP003076869 RP003080464 RP003083449 RP003092193 RP003098229 RP003103076 RP003110707 RP003111390 RP003113388 RP003115814 RP003120756 RP003131339 RP003131400 RP003132682 RP003134763 RP003158167 RP003166338 RP003172506 RP003200807 RP003201238 RP003205708 RP003214242 RP003231067 RP003233347 RP003235232 RP003270653 RP003275134 RP003282824 RP003283247 RP003295626 RP003296079 RP003302777 RP003303837 RP003330345 RP003331698 RP003372937 RP003390178 RP003394817 RP003423206 RP003474029 RP003478474 RP003498305 RP003499277 RP003503651 RP003512810 RP003520885 RP003526789 RP003532067 RP003575123 RP003607711 RP003624487 RP003670769 RP004054553 RP004121870 RP004161809 RP004164265 RP004178409 RP004206947 RP004210155 RP004217466 RP004221182 RP004225663 RP004227853 RP004235925 RP004236578 RP004236863 RP004239720 RP004249141 RP004249782 RP004258693 RP004265267 RP004298756 RP004307119 RP004319778 RP004409996 RP004454321 RP004456873 RP004482098 RP004523475 RP004526594
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0046247 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43290
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: BEST:LD40095 CG5938 (FlyBase, 1996-)
Additional comments	Source for merge of BEST:LD40095 CG5938 was shared cDNA (LD40095) (date:030422). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_143296 NM_170331 NM_170332 NM_170333 NM_001104477 RefSeq (Proteins) • NP_651553 NP_733210 NP_733211 NP_733212 NP_001097947 DDBJ / EMBL / GenBank • AAF56693 AAL39776 AAN14108 AAN14109 AAN14110 ABW08785 AI520117 AW943493 AY069631 CZ467779 Entrez Gene - A searchable database of RefSeq genes. • 43290 UniProtKB/TrEMBL • A8JRE5 Q0KI06 Q8T015
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Golgin subfamily A member 7/ERF4 (IPR019383)
Linkouts
	BioGRID - A database of protein and genetic interactions • 68176 DroID - A comprehensive database of gene and protein interactions. • FBgn0046247 DRSC - Results from RNAi screens. • FBgn0046247 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046247 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG5938-RB FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0046247 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43290 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 43290 modMine - Data generated by the modENCODE project. • FBgn0046247
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	BEST:LD40095   CG5938 (Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
	FBgn0039506
References ( 15 )
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Giot et al., 2003, Science 302(5651): Tables S1 to S7. [FBrf0166452]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Myrick et al., 2008.12.2, Alignment of P{wHy} collection to current genome. Alignment of P{wHy} collection to current genome. [FBrf0206273] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] Oliver, 2001.8.16, Genome Res.: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]