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Gene Dmel\Pif2

General Information
Symbol	Dmel\Pif2	Species	D. melanogaster
Name	PFTAIRE-interacting factor 2	Annotation symbol	CG31483
Feature type	protein_coding_gene	FlyBase ID	FBgn0046873
Gene Model Status	Current	Stock availability	2 publicly available
Also Known As	PIF-2
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	83F1-83F1	Sequence location	3R:2,374,758..2,375,705 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene PFTAIRE-interacting factor 2 is referred to in FlyBase by the symbol Dmel\Pif2 (CG31483, FBgn0046873). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: protein binding. The biological processes in which it is involved are not known. One allele is reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of no expression detected. Peak expression observed in adult male stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult testis. Comments on Affy2 ProbeSet: ProbeSet 1634976_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Pif2. Gene sequence location is 3R:2374758..2375705.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 83F1-83F1   Limits computationally determined from genome sequence between P{lacW}casj1C2 and P{PZ}lab01241
Experimentally Determined Cytological Location
Cytogenetic map Notes References 83E7-83F2     (Rascle, 2000.6.1)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Pif2 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.47
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Pif2-RA FBtr0081676  NM_169147   887   118
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Pif2-PA   FBpp0081176   11.6   118   7.05     NP_731093   AAF54113
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF54113   AF273708 AAL35411   AI945886   AI946012   AI946394   AI947165   AY089451 AAL90189   BE662084   BE975074   BF486590   BF489707   BF490320   BF499289   BF500081   BF500242   BF501674   BF503547   BF504591   BF505643   BT021466   BT023960   EL879497
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8WTI6 Q8T3X6
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult testis. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis    1137.6 Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis  (1137.6) Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis  (1137.6) Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis    1137.6 Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis    1137.6 Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis  (1137.6) Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis  1137.6 Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    1.625 Larval Midgut    2.4 Larval Hindgut    1.2 Larval Malpighian Tubules    2.5 Larval Fat Body    57.3 Larval Salivary Gland    2.4 Larval Trachea    7.675 Larval Carcass    1.2 Adult Head    1.4 Adult Eye    0.4 Adult Brain    1.1 Adult Thoracic-Abdominal Ganglion    1.9 Adult Crop    3.9 Adult Midgut    1.4 Adult Hindgut    3 Adult Malpighian Tubules    2.1 Adult Fat Body    2 Adult Salivary Gland    4.4 Adult Heart    0.825 Adult VirginFemale Spermatheca    1.7 Adult InseminatedFemale Spermatheca    3.9 Adult Ovary    0.7 Adult Testis    1137.6 Adult Male Accessory Gland    5 Adult Carcass    8.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    1.4   NA  Eye    0.4   NA  Brain    1.1   1.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1.9   NA  Crop    3.9   2.4  Midgut    1.4   1.2  Hindgut    3   2.5  Malpighian Tubules    2.1   no informative data  Fat Body    2   2.4  Salivary Gland    4.4   NA  Heart    0.825   7.675  Trachea    NA   NA  VirginFemale Spermatheca    1.7   NA  InseminatedFemale Spermatheca    3.9   NA  Ovary    0.7   NA  Testis    1137.6   NA  Male Accessory Gland    5   1.2  Carcass    8.3 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    145 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (48) central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (145) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (145) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    145 accessory gland, mated 4-day male    20 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    145 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  (48) central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (145) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male  (145) accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    48 central nervous system, larvae L3    0 central nervous system, pupae P8    0 head, virgin 1-day female    0 head, virgin 4-day female    0 head, virgin 20-day female    0 head, mated 1-day female    0 head, mated 4-day female    0 head, mated 20-day female    0 head, mated 1-day male    0 head, mated 4-day male    0 head, mated 20-day male    0 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    1 digestive system, 4-day adult    1 digestive system, 20-day adult    0 fat body, larvae L3 wandering    0 fat body, white prepupae    7 fat body, pupae P8    18 carcass, larvae L3 wandering    0 carcass, 1-day adult    0 carcass, 4-day adult    0 carcass, 20-day adult    1 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    145 accessory gland, mated 4-day male    20 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of no expression detected. Peak expression observed in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day    108 adult male 30day    124 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP  (31) pupae 3d postWPP  (34) pupae 4d postWPP  (50) adult male 01day  (81) adult male 05day  (108) adult male 30day  (124) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day  (108) adult male 30day  (124) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day    108 adult male 30day    124 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day    108 adult male 30day    124 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP  31 pupae 3d postWPP  (34) pupae 4d postWPP  (50) adult male 01day  (81) adult male 05day  (108) adult male 30day  (124) adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day  108 adult male 30day  124 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    0 embryo 16-18hr    0 embryo 18-20hr    0 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    3 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    9 white prepupae new    8 white prepupae 12hr    15 white prepupae 24hr    24 pupae 2d postWPP    31 pupae 3d postWPP    34 pupae 4d postWPP    50 adult male 01day    81 adult male 05day    108 adult male 30day    124 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult  (36) Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult  (36) Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    9 Cadmium 50 mM 6 hrs, larvae L3    2 Cadmium 50 mM 12 hrs, larvae L3    4 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    13 Copper 0.5 mM 12 hrs, larvae L3    4 Copper 15 mM 48 hrs, 4-day adult    3 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    9 Ethanol 2.5% 3 hrs, larvae L3    23 Ethanol 5% 3 hrs, larvae L3    1 Ethanol 10% 3 hrs, larvae L3    1 Caffeine 1.5 mg/ml 4 hrs, larvae L3    1 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    4 Caffeine 25 mg/ml 48 hrs, 4-day adult    5 Paraquat 5 mM 48 hrs, 4-day adult    23 Paraquat 10 mM 48 hrs, 4-day adult    36 Rotenone 2 μg 12 hrs, larvae L3    1 Rotenone 8 μg 12 hrs, larvae L3    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (Graveley et al., 2011) mE1_20_mRNA_expression_cluster_19
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046873 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31483-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Pif2 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Pif2 Class Mutagen Stocks Known lesion Pif2GD5159 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5159} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
	There is no information supporting a biological process or cellular component term for this gene. (Based on a review of available data before: 2006)
Terms Based on Experimental Evidence ( 1 term )
Molecular Function
CV term Evidence References
protein binding inferred from physical interaction with Eip63E (Rascle et al., 2003)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Pif2 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0046873 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 170876
Orthologs
OrthoDB Orthologs (239) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6QVCX8, EOG68GWNK, EOG6WM5FR, EOG62NJM6 Dipteran inclusive ortholog search EOG6W0XN0 Insect inclusive ortholog search EOG60CGBR, EOG602VMZ Arthropod inclusive ortholog search EOG605QFW Metazoa inclusive ortholog search EOG6677CK
Orthologs in Drosophila Species (EOG6QVCX8, EOG68GWNK, EOG6WM5FR, EOG62NJM6)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Ccp84Ab     Drosophila melanogaster fruit fly  Dmel\CG13059     Drosophila melanogaster fruit fly  Dmel\CG42784     Drosophila melanogaster fruit fly  Dmel\CG5181     Drosophila melanogaster fruit fly  Dmel\sba     Drosophila melanogaster fruit fly  Dmel\Pif2     Drosophila melanogaster fruit fly  Dmel\Strn-Mlck     Drosophila melanogaster fruit fly  Dmel\byn     Drosophila melanogaster fruit fly  Dmel\CG43332     Drosophila melanogaster fruit fly  Dmel\CHES-1-like     Drosophila melanogaster fruit fly  Dmel\srp     Drosophila simulans   Dsim\GD25582   Y Drosophila sechellia   Dsec\GM20106   Y Drosophila erecta   Dere\GG22317   Y Drosophila yakuba   Dyak\GE14114   Y Drosophila ananassae   Dana\GF13334   Y Drosophila pseudoobscura pseudoobscura   Dpse\GA30265   Y Drosophila persimilis   Dper\GL20658   Y Drosophila persimilis   Dper\GL20657   Y Drosophila willistoni   Dwil\GK22103   Y Drosophila virilis   Dvir\GJ20095   Y Drosophila virilis   Dvir\GJ16020   Y Drosophila virilis   Dvir\GJ18382   Y Drosophila mojavensis   Dmoj\GI20421   Y Drosophila grimshawi   Dgri\GH19834   Y
Orthologs in non-Drosophila Dipterans (EOG6W0XN0)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL008057 Y Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ012863 Y
Orthologs in non-Dipteran Insects (EOG60CGBR, EOG602VMZ)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB47946 Y Apis mellifera Western honey bee  Amel\GB47948 Y Apis mellifera Western honey bee  Amel\GB47947 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016102 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016115 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016114 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG016113 Y Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG015617 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH27154 Y Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH15218 Y Atta cephalotes Leafcutter ant  Acep\ACEP15048 Y Atta cephalotes Leafcutter ant  Acep\ACEP26046 Y Camponotus floridanus Florida carpenter ant  Cflo\CFLO14725 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL25964 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL24167 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL28060 Y Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL20757 Y Linepithema humile Argentine ant  Lhum\LH14217 Y Linepithema humile Argentine ant  Lhum\LH25501 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB26557 Y Pogonomyrmex barbatus Red harvester ant  Pbar\PB15729 Y Solenopsis invicta Red fire ant  Sinv\SINV12027 Y Solenopsis invicta Red fire ant  Sinv\SINV12023 Y Solenopsis invicta Red fire ant  Sinv\SINV12020 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI069103 Y Acyrthosiphon pisum Pea aphid  Apim\ACYPI007076 Y Bombyx mori Silkmoth  Bmor\BGIBMGA002035 Y Bombyx mori Silkmoth  Bmor\BGIBMGA002036 Y Pediculus humanus Human body louse  Phum\PHUM541150 Y Tribolium castaneum Red flour beetle  Tcas\TC002962 Y
Orthologs in non-Insect Arthropods (EOG605QFW)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\Thtpa Y Daphnia pulex Water flea  Dpux\JGI_V11_53743 Y Daphnia pulex Water flea  Dpux\JGI_V11_305289 Y
Orthologs in non-Arthropod Metazoa (EOG6677CK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ssq-4 Y Caenorhabditis elegans Nematode  Cele\him-4 Y Caenorhabditis elegans Nematode  Cele\Y48C3A.12 Y Caenorhabditis elegans Nematode  Cele\ZC178.2 Y Caenorhabditis elegans Nematode  Cele\F11E6.3 Y Caenorhabditis elegans Nematode  Cele\ZK617.1 Y Caenorhabditis elegans Nematode  Cele\F41E6.11 Y Caenorhabditis elegans Nematode  Cele\ttn-1 Y Caenorhabditis elegans Nematode  Cele\npp-4 Y Caenorhabditis elegans Nematode  Cele\cut-2 Y Caenorhabditis elegans Nematode  Cele\ssq-3 Y Caenorhabditis elegans Nematode  Cele\ssq-2 Y Caenorhabditis elegans Nematode  Cele\W07G1.5 Y Caenorhabditis elegans Nematode  Cele\col-135 Y Caenorhabditis elegans Nematode  Cele\ssq-1 Y Caenorhabditis elegans Nematode  Cele\dur-1 Y Caenorhabditis elegans Nematode  Cele\C10G11.7 Y Caenorhabditis elegans Nematode  Cele\B0205.10 Y Caenorhabditis elegans Nematode  Cele\C02B10.5 Y Caenorhabditis elegans Nematode  Cele\ZC373.4 Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023876gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_017487gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_000057gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_000442gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008085gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_009818gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_010006gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_015813gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_013917gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_011693gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_008653gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_003460gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_023875gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_005613gn Y Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_001282gn Y Danio rerio Zebrafish  Drer\ENSDARG00000044673 Y Danio rerio Zebrafish  Drer\im:7148400 Y Danio rerio Zebrafish  Drer\ENSDARG00000034801 Y Danio rerio Zebrafish  Drer\ttnb Y Danio rerio Zebrafish  Drer\mylk4 Y Danio rerio Zebrafish  Drer\hmcn2 Y Danio rerio Zebrafish  Drer\mylk2 Y Danio rerio Zebrafish  Drer\hmcn1 Y Danio rerio Zebrafish  Drer\dscama Y Danio rerio Zebrafish  Drer\ENSDARG00000091260 Y Danio rerio Zebrafish  Drer\BX548021.2 Y Danio rerio Zebrafish  Drer\dscamb Y Danio rerio Zebrafish  Drer\ENSDARG00000004753 Y Danio rerio Zebrafish  Drer\dscaml1 Y Danio rerio Zebrafish  Drer\ttna Y Danio rerio Zebrafish  Drer\mylk3 Y Danio rerio Zebrafish  Drer\ENSDARG00000029048 Y Danio rerio Zebrafish  Drer\ENSDARG00000039311 Y Xenopus tropicalis Western clawed frog  Xtro\tn3 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000015021 Y Xenopus tropicalis Western clawed frog  Xtro\mylk3 Y Xenopus tropicalis Western clawed frog  Xtro\mylk4 Y Xenopus tropicalis Western clawed frog  Xtro\ENSXETG00000033779 Y Xenopus tropicalis Western clawed frog  Xtro\dscaml1 Y Xenopus tropicalis Western clawed frog  Xtro\mylk Y Xenopus tropicalis Western clawed frog  Xtro\dscam Y Xenopus tropicalis Western clawed frog  Xtro\hmcn1 Y Xenopus tropicalis Western clawed frog  Xtro\hmcn2 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000024448 Y Gallus gallus Domestic chicken  Ggal\LOC427896 Y Gallus gallus Domestic chicken  Ggal\NOVA1 Y Gallus gallus Domestic chicken  Ggal\HMCN1 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000011775 Y Gallus gallus Domestic chicken  Ggal\DSCAM Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000024060 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000011759 Y Gallus gallus Domestic chicken  Ggal\770789 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000007204 Y Gallus gallus Domestic chicken  Ggal\MYLK2 Y Gallus gallus Domestic chicken  Ggal\MYLK3 Y Gallus gallus Domestic chicken  Ggal\MYLK Y Gallus gallus Domestic chicken  Ggal\DSCAML1 Y Gallus gallus Domestic chicken  Ggal\MYLK4 Y Gallus gallus Domestic chicken  Ggal\LOC428278 Y Gallus gallus Domestic chicken  Ggal\ENSGALG00000011771 Y Mus musculus House mouse  Mmus\Lce1j Y Mus musculus House mouse  Mmus\Krtap6-1 Y Mus musculus House mouse  Mmus\Krtap6-1 Y Mus musculus House mouse  Mmus\Krtap16-7 Y Mus musculus House mouse  Mmus\Syn2 Y Mus musculus House mouse  Mmus\Lce1l Y Mus musculus House mouse  Mmus\Gm14185 Y Mus musculus House mouse  Mmus\Gm14193 Y Mus musculus House mouse  Mmus\Gm14193 Y Mus musculus House mouse  Mmus\Gm10217 Y Mus musculus House mouse  Mmus\Dscaml1 Y Mus musculus House mouse  Mmus\Gm10229 Y Mus musculus House mouse  Mmus\Dscam Y Mus musculus House mouse  Mmus\Hist1h1d Y Mus musculus House mouse  Mmus\Krtap16-8 Y Mus musculus House mouse  Mmus\Mylk Y Mus musculus House mouse  Mmus\Lce1c Y Mus musculus House mouse  Mmus\ENSMUSG00000051747 Y Mus musculus House mouse  Mmus\Barhl2 Y Mus musculus House mouse  Mmus\Gm14177 Y Mus musculus House mouse  Mmus\Hmcn1 Y Mus musculus House mouse  Mmus\Marcks Y Mus musculus House mouse  Mmus\Gm14190 Y Mus musculus House mouse  Mmus\Hist1h1c Y Mus musculus House mouse  Mmus\Foxd3 Y Mus musculus House mouse  Mmus\Gm10563 Y Mus musculus House mouse  Mmus\Gm17606 Y Mus musculus House mouse  Mmus\Gm14191 Y Mus musculus House mouse  Mmus\Tmem158 Y Mus musculus House mouse  Mmus\Gm14181 Y Mus musculus House mouse  Mmus\Krtap16.10L Y Mus musculus House mouse  Mmus\Mylk4 Y Mus musculus House mouse  Mmus\Gm6871 Y Mus musculus House mouse  Mmus\Gm11595 Y Mus musculus House mouse  Mmus\Mylk2 Y Mus musculus House mouse  Mmus\Krtap6-1 Y Mus musculus House mouse  Mmus\Lce1e Y Mus musculus House mouse  Mmus\Gm11564 Y Mus musculus House mouse  Mmus\Gm10974 Y Mus musculus House mouse  Mmus\Krtap4-9 Y Mus musculus House mouse  Mmus\Hmcn2 Y Mus musculus House mouse  Mmus\Gm14196 Y Mus musculus House mouse  Mmus\Phgr1 Y Mus musculus House mouse  Mmus\Mylk3 Y Mus musculus House mouse  Mmus\Gm14192 Y Mus musculus House mouse  Mmus\Lce1f Y Mus musculus House mouse  Mmus\Gm14193 Y Mus musculus House mouse  Mmus\Krtap4-8 Y Mus musculus House mouse  Mmus\Gm11034 Y Mus musculus House mouse  Mmus\Gm14178 Y Mus musculus House mouse  Mmus\Gm8223 Y Mus musculus House mouse  Mmus\Sox3 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000030872 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000043220 Y Rattus norvegicus Norway rat  Rnor\Dscaml1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000039623 Y Rattus norvegicus Norway rat  Rnor\Hmcn1 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000022637 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000030293 Y Rattus norvegicus Norway rat  Rnor\Mylk3 Y Rattus norvegicus Norway rat  Rnor\Mylk2 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000038781 Y Rattus norvegicus Norway rat  Rnor\RGD1565323 Y Rattus norvegicus Norway rat  Rnor\Dscam Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000030744 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000033548 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000038410 Y Rattus norvegicus Norway rat  Rnor\Mylk Y Rattus norvegicus Norway rat  Rnor\LOC684744 Y Rattus norvegicus Norway rat  Rnor\ENSRNOG00000008820 Y Homo sapiens Human  Hsap\KRTAP6-1 Y Homo sapiens Human  Hsap\ENSG00000249992 Y Homo sapiens Human  Hsap\ENSG00000257153 Y Homo sapiens Human  Hsap\ELN Y Homo sapiens Human  Hsap\PHGR1 Y Homo sapiens Human  Hsap\KRTAP5-5 Y Homo sapiens Human  Hsap\DSCAM Y Homo sapiens Human  Hsap\HMCN1 Y Homo sapiens Human  Hsap\MYLK3 Y Homo sapiens Human  Hsap\ENSG00000065534 Y Homo sapiens Human  Hsap\KRTAP5-8 Y Homo sapiens Human  Hsap\ENSG00000262483 Y Homo sapiens Human  Hsap\NKX1-1 Y Homo sapiens Human  Hsap\ENSG00000262498 Y Homo sapiens Human  Hsap\ENSG00000258264 Y Homo sapiens Human  Hsap\HMCN2 Y Homo sapiens Human  Hsap\KRTAP5-1 Y Homo sapiens Human  Hsap\ENSG00000257917 Y Homo sapiens Human  Hsap\ENSG00000263306 Y Homo sapiens Human  Hsap\CT47B1 Y Homo sapiens Human  Hsap\DSCAML1 Y Homo sapiens Human  Hsap\FOXD3 Y Homo sapiens Human  Hsap\KRTAP5-4 Y Homo sapiens Human  Hsap\BAG3 Y Homo sapiens Human  Hsap\ENSG00000262626 Y Homo sapiens Human  Hsap\MARCKS Y Homo sapiens Human  Hsap\MYLK2 Y Homo sapiens Human  Hsap\TTN Y Homo sapiens Human  Hsap\MYLK4 Y
Human Orthologs (29)
Gene OMIM HGNC Hsap\KRTAP6-1     Hsap\ENSG00000249992     Hsap\ENSG00000257153     Hsap\ELN     Hsap\PHGR1     Hsap\KRTAP5-5     Hsap\DSCAM     Hsap\HMCN1     Hsap\MYLK3     Hsap\ENSG00000065534     Hsap\KRTAP5-8     Hsap\ENSG00000262483     Hsap\NKX1-1     Hsap\ENSG00000262498     Hsap\ENSG00000258264     Hsap\HMCN2     Hsap\KRTAP5-1     Hsap\ENSG00000257917     Hsap\ENSG00000263306     Hsap\CT47B1     Hsap\DSCAML1     Hsap\FOXD3     Hsap\KRTAP5-4     Hsap\BAG3     Hsap\ENSG00000262626     Hsap\MARCKS     Hsap\MYLK2     Hsap\TTN     Hsap\MYLK4
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 2 )
VDRC	v51328 w1118; P{GD5159}v51328 v51329 w1118; P{GD5159}v51329
Genomic Clones ( 1 )
	BACR19I14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 19 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT03160 AT13468 AT26658
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT04750 AT06176 AT07912 AT13815 AT14883 AT15010 AT17067 AT20986 AT25836
Other clones	bs18a02 bs19e11 bs20e01 bs25a03 bs35g11 bs38c10 IP09456
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0046873 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 170876
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: Pif2 BcDNA:AT26658 (FlyBase, 1996-) Source for merge of: Pif2 NEST:bs18a02 (FlyBase, 1996-) Source for merge of: Pif2 NEST:bs19e11 NEST:bs25a03 NEST:bs35g11 (Rana, 2004.7.8) Source for merge of: Pif2 NEST:bs20e01 (FlyBase, 1996-)
Additional comments	Release 2 annotation CG10690 maps to the same place in the genome as the release 3 annotation CG31483 (Pif2) but is on the opposite strand. (FlyBase Genome Annotators, 2002-2003) Source for merge of Pif2 BcDNA:AT26658 was a shared cDNA (date:030728). (FlyBase, 1996-) Source for merge of Pif2 NEST:bs18a02 was sequence comparison (date:031024). (FlyBase, 1996-)
Other Comments
	New annotation (CG31483) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_169147 RefSeq (Proteins) • NP_731093 DDBJ / EMBL / GenBank • AAF54113 AAL35411 AAL90189 AF273708 AI945886 AI946012 AI946394 AI947165 AY089451 BE662084 BF490320 Entrez Gene - A searchable database of RefSeq genes. • 170876 UniProtKB/TrEMBL • Q8T3X6 Q8WTI6
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0046873 DRSC - Results from RNAi screens. • FBgn0046873 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046873 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31483-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0046873 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 170876 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 170876 modMine - Data generated by the modENCODE project. • FBgn0046873
Synonyms & Secondary IDs ( 11 )
Reported As
Symbol Synonym	BcDNA:AT26658   bs20e01.y1 (Oliver, 2001.8.16) CG31483   NEST:bs18a02   NEST:bs19e11   NEST:bs20e01   NEST:bs25a03   NEST:bs35g11   PIF-2 (Rascle et al., 2003, Rascle, 2000.6.1) Pif2 (Reiter et al., 2007)
Name Synonym	PFTAIRE-interacting factor 2
Secondary FlyBase IDs
	FBgn0045982 FBgn0046005 FBgn0046023 FBgn0046028 FBgn0046039 FBgn0051483 FBgn0063706
References ( 11 )
Research paper	Reiter et al., 2007, Fly 1(3): 164--171 Accentuate the negative: proteome comparisons using the negative proteome database. [FBrf0200136] Rascle et al., 2003, Mech. Dev. 120(5): 617--628 L63, the Drosophila PFTAIRE, interacts with two novel proteins unrelated to cyclins. [FBrf0160865]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980]
Personal communication to FlyBase	Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Rana, 2004.7.8, BLAST analysis. BLAST analysis. [FBrf0178762] Oliver, 2001.8.16, Genome Res.: File from B. Oliver containing information on ESTs expressed in the Drosophila testis, described in Andrews et al., 2000, Genome Res. 10(12): 2030-2043 (FBrf0132348). [FBrf0137492] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase Curators, 2002-, Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. Use of the ND evidence code for Gene Ontology (GO) terms in FlyBase. [FBrf0159398] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
DNA/RNA sequence record	Rascle, 2000.6.1, GenBank/EMBL/DDBJ: AF273708 Drosophila melanogaster PFTAIRE-interacting factor 2 (PIF-2) mRNA, complete cds. [FBrf0142011]