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Gene Dmel\Obp83cd

General Information
Symbol	Dmel\Obp83cd	Species	D. melanogaster
Name	Odorant-binding protein 83cd	Annotation symbol	CG15582
Feature type	protein_coding_gene	FlyBase ID	FBgn0046878
Gene Model Status	Current	Stock availability	6 publicly available
Also Known As	Obp83c, Obp83d, 83d, 83c
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	83D4-83D4	Sequence location	3R:1,933,856..1,935,455 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene Odorant-binding protein 83cd is referred to in FlyBase by the symbol Dmel\Obp83cd (CG15582, FBgn0046878). It is a protein_coding_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: odorant binding. Based on sequence similarity, it is predicted to be involved in the biological process: sensory perception of chemical stimulus. 7 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Pheromone/general odorant binding protein; Pheromone/general odorant binding protein, PBP/GOBP, domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult heart, adult spermathecae. Comments on Affy2 ProbeSet: ProbeSet 1638221_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Obp83cd. Gene sequence location is 3R:1933856..1935455.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 83D4-83D4   Limits computationally determined from genome sequence between P{lacW}casj1C2 and P{PZ}lab01241
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Obp83cd for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.50
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Obp83cd-RA FBtr0078584  NM_141355   899   242
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Obp83cd-PA   FBpp0078233   28.0   242   6.49     NP_649612   AAF51919
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Pheromone/general odorant binding protein (IPR006170) Pheromone/general odorant binding protein, PBP/GOBP, domain (IPR023316)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF51919   AY071635 AAL49257   BI212706   BI484765   BI485590   BP543941   BP543942   BP544307   BP544308   BP554914   BP554915   CO186706   CO288968   CZ466603   CZ466604   EC059487   EC064679   EC085657   EC233957   EC240779
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VNL1
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References regulatory region FBsf0000436395 3R:1,930,909..1,933,911 evidence=Reporter construct (in vivo) (Galindo and Smith, 2001, Halfon, 2012.6.19)
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
in situ Stage Tissue/Position (including subcellular localization) Reference embryonic stage 13 -- 16   embryonic/larval fat body   (Fisher et al., 2012)
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: adult eye, adult heart, adult spermathecae. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    0.75 Larval Midgut    2.4 Larval Hindgut    7.8 Larval Malpighian Tubules    4.5 Larval Fat Body    13.5 Larval Salivary Gland    0.7 Larval Trachea    6.525 Larval Carcass    3.075 Adult Head    68.8 Adult Eye    153.25 Adult Brain    6.2 Adult Thoracic-Abdominal Ganglion    3.3 Adult Crop    3.4 Adult Midgut    1.3 Adult Hindgut    2 Adult Malpighian Tubules    1.7 Adult Fat Body    77.6 Adult Salivary Gland    2.4 Adult Heart    140.55 Adult VirginFemale Spermatheca    166.2 Adult InseminatedFemale Spermatheca    220 Adult Ovary    1.7 Adult Testis    3.9 Adult Male Accessory Gland    2.1 Adult Carcass    56.6 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    68.8   NA  Eye    153.25   NA  Brain    6.2   0.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    3.3   NA  Crop    3.4   2.4  Midgut    1.3   7.8  Hindgut    2   4.5  Malpighian Tubules    1.7   no informative data  Fat Body    77.6   0.7  Salivary Gland    2.4   NA  Heart    140.55   6.525  Trachea    NA   NA  VirginFemale Spermatheca    166.2   NA  InseminatedFemale Spermatheca    220   NA  Ovary    1.7   NA  Testis    3.9   NA  Male Accessory Gland    2.1   3.075  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    0 central nervous system, larvae L3    0 central nervous system, pupae P8    1 head, virgin 1-day female    5 head, virgin 4-day female    5 head, virgin 20-day female    9 head, mated 1-day female    4 head, mated 4-day female    9 head, mated 20-day female    8 head, mated 1-day male    2 head, mated 4-day male    3 head, mated 20-day male    5 salivary gland, larvae L3 wandering    0 salivary gland, white prepupae    0 digestive system, larvae L3 wandering    0 digestive system, 1-day adult    1 digestive system, 4-day adult    0 digestive system, 20-day adult    0 fat body, larvae L3 wandering    3 fat body, white prepupae    0 fat body, pupae P8    0 carcass, larvae L3 wandering    1 carcass, 1-day adult    4 carcass, 4-day adult    8 carcass, 20-day adult    5 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    0 accessory gland, mated 4-day male    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of very low expression. Peak expression observed within 18-24 hour embryonic stages, during early larval stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr  (57) embryo 20-22hr  (60) embryo 22-24hr  (61) larva L1  (57) larva L2  (69) larva L3 12hr old  (70) larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr  (57) embryo 20-22hr  (60) embryo 22-24hr  (61) larva L1  (57) larva L2  (69) larva L3 12hr old  (70) larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    1 embryo 10-12hr    1 embryo 12-14hr    1 embryo 14-16hr    3 embryo 16-18hr    25 embryo 18-20hr    57 embryo 20-22hr    60 embryo 22-24hr    61 larva L1    57 larva L2    69 larva L3 12hr old    70 larva L3 puffstage 1-2    2 larva L3 puffstage 3-6    4 larva L3 puffstage 7-9    11 white prepupae new    7 white prepupae 12hr    21 white prepupae 24hr    20 pupae 2d postWPP    25 pupae 3d postWPP    21 pupae 4d postWPP    5 adult male 01day    14 adult male 05day    2 adult male 30day    1 adult female 01day    12 adult female 05day    4 adult female 30day    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    1 embryonic S1    1 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    1 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    1 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    0 CNS ML-DmBG2-c2    8 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    8 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    1 cold shock, 4-day adult    0 heat shock, 4-day adult    3 Cadmium 50 mM 6 hrs, larvae L3    4 Cadmium 50 mM 12 hrs, larvae L3    0 Cadmium 50 mM 48 hrs, 4-day adult    6 Cadmium 100 mM 48 hrs, 4-day adult    1 Copper 0.5 mM 12 hrs, larvae L3    0 Copper 15 mM 48 hrs, 4-day adult    0 Zinc 5 mM 12 hrs, larvae L3    1 Zinc 4.5 mM 48 hrs, 4-day adult    0 Ethanol 2.5% 3 hrs, larvae L3    1 Ethanol 5% 3 hrs, larvae L3    13 Ethanol 10% 3 hrs, larvae L3    7 Caffeine 1.5 mg/ml 4 hrs, larvae L3    11 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    1 Caffeine 25 mg/ml 48 hrs, 4-day adult    0 Paraquat 5 mM 48 hrs, 4-day adult    2 Paraquat 10 mM 48 hrs, 4-day adult    2 Rotenone 2 μg 12 hrs, larvae L3    7 Rotenone 8 μg 12 hrs, larvae L3    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_12 mE1_20_mRNA_expression_cluster_12
External Data & Images
Linkouts	BDGP expression data • RE67916 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046878 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15582-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for Obp83cd Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Obp83cdGD748 Phenotype manifest in Allele
Classical Alleles ( 3 )
For All Classical Alleles Show
Allele of Obp83cd Class Mutagen Stocks Known lesion Obp83cdc00615 piggyBac transposase 1 -- Obp83cdc01174 1 -- Obp83cdc00616 piggyBac transposase 0 --
Alleles Carried on Transgenic Constructs ( 4 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Obp83cd Class Mutagen Stocks Known lesion Obp83cdGD748 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Obp83cdHMS02536 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Obp83cdKK110200 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Obp83cdNIG.15582R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD748} NA P{KK110200} NA P{NIG.15582R} NA P{TRiP.HMS02536} NA reporter construct P{Obp83cd-lacZ.c} No
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{PB}Obp83cdc00615 NA PBac{PB}Obp83cdc00616 NA PBac{PB}Obp83cdc01174 NA
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
odorant binding inferred from sequence alignment with UniProtKB:P34174 (Hekmat-Scafe et al., 2002) inferred from sequence or structural similarity with lush (Vieira and Rozas, 2011) inferred from sequence or structural similarity with UniProtKB:P34174 (Galindo and Smith, 2001) non-traceable author statement (Robertson, 2000.4.16)
Biological Process
CV term Evidence References
sensory perception of chemical stimulus inferred from sequence alignment with UniProtKB:P34174 (Hekmat-Scafe et al., 2002) inferred from sequence or structural similarity with lush (Vieira and Rozas, 2011) inferred from sequence or structural similarity with UniProtKB:P34174 (Galindo and Smith, 2001)
Cellular Component
CV term Evidence References
extracellular region inferred from sequence model (Vieira and Rozas, 2011)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Obp83cd allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0046878
Orthologs
OrthoDB Orthologs (11) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6WQ1NT Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (EOG6WQ1NT)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Obp83cd     Drosophila simulans   Dsim\Obp83cd Y   Drosophila sechellia   Dsec\Obp83cd Y   Drosophila erecta   Dere\Obp83cd Y   Drosophila yakuba   Dyak\Obp83cd Y   Drosophila ananassae   Dana\Obp83cd Y   Drosophila pseudoobscura pseudoobscura   Dpse\Obp83cd Y   Drosophila persimilis   Dper\Obp83cd Y   Drosophila willistoni   Dwil\Obp83cd Y   Drosophila virilis   Dvir\Obp83cd Y   Drosophila grimshawi   Dgri\Obp83cd Y
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (10) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\Obp83cd Drosophila sechellia Dsec\Obp83cd Drosophila erecta Dere\Obp83cd Drosophila yakuba Dyak\Obp83cd Drosophila ananassae Dana\Obp83cd Drosophila pseudoobscura pseudoobscura Dpse\Obp83cd Drosophila persimilis Dper\Obp83cd Drosophila willistoni Dwil\Obp83cd Drosophila virilis Dvir\Obp83cd Drosophila grimshawi Dgri\Obp83cd
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	42844 y1 sc* v1; P{TRiP.HMS02536}attP40
Harvard	- PBac{PB}Obp83cdc00615 - PBac{PB}Obp83cdc01174
VDRC	v106866 P{KK110200}VIE-260B v42725 w1118; P{GD748}v42725 v42726 w1118; P{GD748}v42726
Genomic Clones ( 1 )
	BACR29J02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 8 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE67916
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE17849 RE68952
Other clones	EK022327 EK069756 FGC023C02 FGC025B09 FGM232D08
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0046878 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40746
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	"Obp83c" and "Obp83d" were treated as separate genes in FBrf0141547, but in FBrf0151320 it was reported that they form a single gene with two six-cysteine OBP motifs joined together. RT-PCR with primers that cross the boundary of the two six-cysteine motifs produces a single band, confirming that "Obp83c" and "Obp83d" are encoded by a single transcript. This is also supported by direct sequencing of the PCR products. The single gene that incorporates "Obp83c" and "Obp83d" is named Obp83cd to reflect its hybrid nature. (Zhou et al., 2004)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_141355 RefSeq (Proteins) • NP_649612 DDBJ / EMBL / GenBank • AAF51919 AAL49257 AY071635 BI484765 BI485590 CZ466603 CZ466604 Entrez Gene - A searchable database of RefSeq genes. • 40746 UniProtKB/TrEMBL • Q9VNL1
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Pheromone/general odorant binding protein (IPR006170) Pheromone/general odorant binding protein, PBP/GOBP, domain (IPR023316) BDGP expression data - Patterns of gene expression in Drosophila embryogenesis • RE67916
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0046878 DRSC - Results from RNAi screens. • FBgn0046878 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0046878 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG15582-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0046878 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 40746 modMine - Data generated by the modENCODE project. • FBgn0046878 REDfly - A database of transcriptional regulatory elements. • FBgn0046878
Synonyms & Secondary IDs ( 13 )
Reported As
Symbol Synonym	83c (Smith, 2002.1.14, Galindo and Smith, 2001) 83c-1 (Graham and Davies, 2002) 83c-2 (Graham and Davies, 2002) 83d (Smith, 2002.1.14, Galindo and Smith, 2001) CG15582 (Landry et al., 2005, Zhou et al., 2004, Graham, 2002.6.18, Robertson, 2000.8.17, Robertson, 2000.4.16, Wittkopp et al., 2004, Keleman et al., 2009.8.5, Wittkopp et al., 2008, Ni et al., 2010.12.1) DmelObp83cd (Vieira and Rozas, 2011) Obp83c (Mackay et al., 2005, Hekmat-Scafe, 2002.3.5, Hekmat-Scafe et al., 2002, ) Obp83cd (Wittkopp et al., 2008, Vieira et al., 2007, Zhou et al., 2009, Japanese National Institute of Genetics, 2012.5.21) Obp83d (Hekmat-Scafe, 2002.3.5, Hekmat-Scafe et al., 2002, )
Name Synonym	Odorant-binding protein 83c (Galindo and Smith, 2001) Odorant-binding protein 83cd   Odorant-binding protein 83d (Galindo and Smith, 2001) odorant receptor 83cd (Pospisilik et al., 2010)
Secondary FlyBase IDs
	FBgn0037400 FBgn0046877
References ( 34 )
Generate a list of	All references relating to this gene ( 34 )
List References by type	Research paper  ( 12 ) Supplementary material  ( 5 ) Personal communication to FlyBase  ( 13 ) FlyBase analysis  ( 1 ) Stock list  ( 1 ) Website  ( 1 )
Recent research papers ( 2 )
	Swarup et al., 2011, Genes Brain Behav. 10(6): 648--657 Functional dissection of Odorant binding protein genes in Drosophila melanogaster. [FBrf0214592] Vieira and Rozas, 2011, Genome Biol. Evol. 3: 476--490 Comparative Genomics of the Odorant-Binding and Chemosensory Protein Gene Families across the Arthropoda: Origin and Evolutionary History of the Chemosensory System. [FBrf0214323] Show all research papers ...