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Gene Dmel\RIC-3

General Information
Symbol	Dmel\RIC-3	Species	D. melanogaster
Name		Annotation symbol	CG30296
Feature type	protein_coding_gene	FlyBase ID	FBgn0050296
Gene Model Status	Current	Stock availability	1 publicly available
Also Known As	CG9349
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	57B9-57B12	Sequence location	2R:16,905,289..16,912,423 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\RIC-3 (CG30296, FBgn0050296). It is a protein_coding_gene from Drosophila melanogaster. It is reported to have molecular function: unfolded protein binding. There is experimental evidence that it is involved in the biological process: chaperone-mediated protein folding; protein maturation by protein folding. 3 alleles are reported. No phenotypic data is available. It has 19 annotated transcripts and 19 annotated polypeptides. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult heart, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval hindgut. Comments on Affy2 ProbeSet: ProbeSet 1639028_a_at completely aligns to an exonic region common to each of the 15 FlyBase-annotated transcript isoforms of CG30296. Gene sequence location is 2R:16905290..16912423.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Polypeptides RIC-3-PU RIC-3-PV Transcripts RIC-3-RV RIC-3-RU
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 57B9-57B12   Limits computationally determined from genome sequence between P{EP}grauEP688&P{PZ}shg10469 and P{PZ}king-tubby02821&P{lacW}Xbp1k13803
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\RIC-3 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.42 Low-frequency RNA-Seq exon junction(s) not annotated. Annotated transcripts do not represent all possible combinations of alternative exons and/or alternative promoters. Gene model reviewed during 5.51
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) RIC-3-RC FBtr0071528  NM_137693   2516   505 RIC-3-RD FBtr0071527  NM_166418   2396   465 RIC-3-RE FBtr0113369  NM_001103919   2444   481 RIC-3-RG FBtr0113371  NM_001103921   2471   505 RIC-3-RH FBtr0301892  NM_001169750   2369   456 RIC-3-RI FBtr0301893  NM_001169751   2270   423 RIC-3-RJ FBtr0301894  NM_001169752   2417   472 RIC-3-RK FBtr0301895  NM_001169753   2177   392 RIC-3-RL FBtr0301896  NM_001169754   2324   441 RIC-3-RM FBtr0301897  NM_001169755   2276   425 RIC-3-RN FBtr0301898  NM_001169756   2423   474 RIC-3-RO FBtr0301899  NM_001169757   2249   416 RIC-3-RP FBtr0301900  NM_001169758   2156   385 RIC-3-RQ FBtr0301901  NM_001169759   2303   434 RIC-3-RR FBtr0301902  NM_206188   2377   472 RIC-3-RS FBtr0310056  NM_001274184   2374   505 RIC-3-RT FBtr0310057  NM_001274185   2552   342 RIC-3-RU FBtr0342838     2127   425 RIC-3-RV FBtr0342839     2524   336
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein RIC-3-PC   FBpp0071457   55.2   505   6.39     NP_611537   AAF46656 RIC-3-PD   FBpp0071456   50.6   465   6.45     NP_726018   AAF46657 RIC-3-PE   FBpp0112281   52.8   481   6.45     NP_001097389   ABV53863 RIC-3-PG   FBpp0112283   55.2   505   6.39     NP_001097391   ABV53865 RIC-3-PH   FBpp0291106   49.8   456   5.99     NP_001163221   ACZ94493 RIC-3-PI   FBpp0291107   46.1   423   6.15     NP_001163222   ACZ94494 RIC-3-PJ   FBpp0291108   51.5   472   6.66     NP_001163223   ACZ94495 RIC-3-PK   FBpp0291109   42.8   392   5.87     NP_001163224   ACZ94496 RIC-3-PL   FBpp0291110   48.2   441   6.53     NP_001163225   ACZ94497 RIC-3-PM   FBpp0291111   46.5   425   5.68     NP_001163226   ACZ94498 RIC-3-PN   FBpp0291112   51.8   474   6.21     NP_001163227   ACZ94499 RIC-3-PO   FBpp0291113   45.2   416   6.03     NP_001163228   ACZ94500 RIC-3-PP   FBpp0291114   41.9   385   5.68     NP_001163229   ACZ94501 RIC-3-PQ   FBpp0291115   47.2   434   6.27     NP_001163230   ACZ94502 RIC-3-PR   FBpp0291116   51.5   472   6.66     NP_995910   AAS64752 RIC-3-PS   FBpp0301757   55.2   505   6.39     NP_001261113   AGB93645 RIC-3-PT   FBpp0301758   37.5   342   10.02     NP_001261114   AGB93646 RIC-3-PU   FBpp0309664   46.5   425   5.68       RIC-3-PV   FBpp0309665   36.8   336   9.91
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA698687   AE013599 AAF46656   AE013599 AAF46657   AE013599 AAS64752   AE013599 ABV53863   AE013599 ABV53865   AE013599 ACZ94493   AE013599 ACZ94494   AE013599 ACZ94495   AE013599 ACZ94496   AE013599 ACZ94497   AE013599 ACZ94498   AE013599 ACZ94499   AE013599 ACZ94500   AE013599 ACZ94501   AE013599 ACZ94502   AE013599 AGB93645   AE013599 AGB93646   AI238830   AI293202   AI517175   AW940572   BE977091   BG637685   BI170308   BI213221   BI240547   BI482496   BI570958   BI583355   BI588061   BI590693   BI591216   BI591288   BI607303   BI607530   BI612392   BI615842   BI616579   BI617004   BI625163   BI626162   BI626994   BI629804   BI631584   BT029115   CK135654   CO187985   CO188195   CO263058   CO263895   CO264026   CO265144   CO274892   CO277757   CO282698   CO306847   CO307868   CO308775   CO310858   CO328842   CO331056   CO331203   CO333315   CO333812   CO333986   CO339404   DN154450   EC059223   EC060970   EC067958   EC068007   EC072509   EC073638   EC077594   EC079053   EC087588   EC198433   EC198822   EC203434   EC205351   EC205402   EC208853   EC221167   EC226891   EC227154   EC244198   EC248936   EC249616   EC252993   EL884123   EL884124   EL884255   EV578095   GH941127   GH946100   GH948472   GH948616   GH950546   GH952001   GH952757   GH954333   GH954645   GH955165   GH955991   GH963238   GH965389   GH967050   GH968531   GH970336   GH971520   GH977094   GH977612   GH982891   GH984887
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W2N3 Q9W2N4 Q058V3 E1JGP3 E1JGP6 E1JGP7 E1JGQ1 E1JGP4 E1JGQ0 E1JGP5 E1JGP8 E1JGP9 E1JGP2
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
mass spectroscopy Stage Tissue/Position (including subcellular localization) Reference day 7 of adulthood -- day 49 of adulthood   adult heart   (Cammarato et al., 2011)
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at high levels in the following post-embryonic organs or tissues: adult head, adult eye, adult central nervous system, adult crop, adult hindgut, adult heart, larval/adult carcass. Expression at moderate levels in the following post-embryonic organs or tissues: larval central nervous system, larval hindgut. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass    1692.825 Adult Head    932.3 Adult Eye    702 Adult Brain    1090.2 Adult Thoracic-Abdominal Ganglion    1104.5 Adult Crop    1656 Adult Midgut    47.2 Adult Hindgut    1161 Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart    1245.075 Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass    1118.5 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass  (1692.825) Adult Head  (932.3) Adult Eye  (702) Adult Brain  (1090.2) Adult Thoracic-Abdominal Ganglion  (1104.5) Adult Crop  (1656) Adult Midgut    47.2 Adult Hindgut  (1161) Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart  (1245.075) Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass  (1118.5) Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass  (1692.825) Adult Head    932.3 Adult Eye    702 Adult Brain  (1090.2) Adult Thoracic-Abdominal Ganglion  (1104.5) Adult Crop  (1656) Adult Midgut    47.2 Adult Hindgut  (1161) Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart  (1245.075) Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass  (1118.5) Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass    1692.825 Adult Head    932.3 Adult Eye    702 Adult Brain    1090.2 Adult Thoracic-Abdominal Ganglion    1104.5 Adult Crop    1656 Adult Midgut    47.2 Adult Hindgut    1161 Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart    1245.075 Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass    1118.5 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass    1692.825 Adult Head    932.3 Adult Eye    702 Adult Brain    1090.2 Adult Thoracic-Abdominal Ganglion    1104.5 Adult Crop    1656 Adult Midgut    47.2 Adult Hindgut    1161 Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart    1245.075 Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass    1118.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass  (1692.825) Adult Head  (932.3) Adult Eye  702 Adult Brain  (1090.2) Adult Thoracic-Abdominal Ganglion  (1104.5) Adult Crop  (1656) Adult Midgut    47.2 Adult Hindgut  (1161) Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart  (1245.075) Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass  (1118.5) Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass  1692.825 Adult Head    932.3 Adult Eye    702 Adult Brain  1090.2 Adult Thoracic-Abdominal Ganglion  1104.5 Adult Crop  1656 Adult Midgut    47.2 Adult Hindgut  1161 Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart  1245.075 Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass  1118.5 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    496.775 Larval Midgut    31.6 Larval Hindgut    493.2 Larval Malpighian Tubules    13.8 Larval Fat Body    9.1 Larval Salivary Gland    6.5 Larval Trachea    86.975 Larval Carcass    1692.825 Adult Head    932.3 Adult Eye    702 Adult Brain    1090.2 Adult Thoracic-Abdominal Ganglion    1104.5 Adult Crop    1656 Adult Midgut    47.2 Adult Hindgut    1161 Adult Malpighian Tubules    14 Adult Fat Body    56.1 Adult Salivary Gland    15.6 Adult Heart    1245.075 Adult VirginFemale Spermatheca    56.9 Adult InseminatedFemale Spermatheca    81.4 Adult Ovary    10.6 Adult Testis    20 Adult Male Accessory Gland    97 Adult Carcass    1118.5 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    932.3   NA  Eye    702   NA  Brain    1090.2   496.775  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1104.5   NA  Crop    1656   31.6  Midgut    47.2   493.2  Hindgut    1161   no informative data  Malpighian Tubules    no informative data   9.1  Fat Body    56.1   6.5  Salivary Gland    no informative data   NA  Heart    1245.075   86.975  Trachea    NA   NA  VirginFemale Spermatheca    56.9   NA  InseminatedFemale Spermatheca    81.4   NA  Ovary    10.6   NA  Testis    20   NA  Male Accessory Gland    97   1692.825  Carcass    1118.5 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male    113 head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3  (39) central nervous system, pupae P8  (81) head, virgin 1-day female  (78) head, virgin 4-day female  (73) head, virgin 20-day female  (30) head, mated 1-day female  (86) head, mated 4-day female  (58) head, mated 20-day female  (28) head, mated 1-day male  (113) head, mated 4-day male  (98) head, mated 20-day male  (68) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8  (31) carcass, larvae L3 wandering  (37) carcass, 1-day adult  (90) carcass, 4-day adult  (76) carcass, 20-day adult  (40) ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male  (113) head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male    113 head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male    113 head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3  (39) central nervous system, pupae P8  (81) head, virgin 1-day female  (78) head, virgin 4-day female  (73) head, virgin 20-day female  30 head, mated 1-day female  (86) head, mated 4-day female  (58) head, mated 20-day female  28 head, mated 1-day male  (113) head, mated 4-day male  (98) head, mated 20-day male  (68) salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8  31 carcass, larvae L3 wandering  (37) carcass, 1-day adult  (90) carcass, 4-day adult  (76) carcass, 20-day adult  (40) ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male  113 head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    3 central nervous system, larvae L3    39 central nervous system, pupae P8    81 head, virgin 1-day female    78 head, virgin 4-day female    73 head, virgin 20-day female    30 head, mated 1-day female    86 head, mated 4-day female    58 head, mated 20-day female    28 head, mated 1-day male    113 head, mated 4-day male    98 head, mated 20-day male    68 salivary gland, larvae L3 wandering    1 salivary gland, white prepupae    1 digestive system, larvae L3 wandering    1 digestive system, 1-day adult    6 digestive system, 4-day adult    6 digestive system, 20-day adult    4 fat body, larvae L3 wandering    0 fat body, white prepupae    2 fat body, pupae P8    31 carcass, larvae L3 wandering    37 carcass, 1-day adult    90 carcass, 4-day adult    76 carcass, 20-day adult    40 ovary, virgin 4-day female    0 ovary, mated 4-day female    0 testis, mated 4-day male    3 accessory gland, mated 4-day male    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr  (30) embryo 22-24hr  (33) larva L1    17 larva L2    16 larva L3 12hr old  (28) larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP  (34) pupae 4d postWPP  (56) adult male 01day  (37) adult male 05day  (35) adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr  30 embryo 22-24hr  (33) larva L1    17 larva L2    16 larva L3 12hr old  28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP  (34) pupae 4d postWPP  (56) adult male 01day  (37) adult male 05day  (35) adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    1 embryo 04-06hr    0 embryo 06-08hr    1 embryo 08-10hr    1 embryo 10-12hr    4 embryo 12-14hr    7 embryo 14-16hr    6 embryo 16-18hr    10 embryo 18-20hr    21 embryo 20-22hr    30 embryo 22-24hr    33 larva L1    17 larva L2    16 larva L3 12hr old    28 larva L3 puffstage 1-2    20 larva L3 puffstage 3-6    19 larva L3 puffstage 7-9    20 white prepupae new    12 white prepupae 12hr    10 white prepupae 24hr    6 pupae 2d postWPP    18 pupae 3d postWPP    34 pupae 4d postWPP    56 adult male 01day    37 adult male 05day    35 adult male 30day    22 adult female 01day    15 adult female 05day    6 adult female 30day    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    0 Schneider line 2 Sg4    0 embryonic 1182-4H    0 embryonic GM2    0 embryonic Kc167    3 embryonic S1    0 embryonic S3    0 leg disc CME L1    0 wing disc CME-W2    2 wing disc ML-DmD8    0 wing disc ML-DmD9    0 wing disc ML-DmD16-c3    0 wing disc ML-DmD21    0 wing disc ML-DmD32    0 haltere disc ML-DmD17-c3    0 eye-antennal disc ML-DmD11    0 antennal disc ML-DmD20-c5    0 mixed discs ML-DmD4-c1    0 CNS ML-DmBG1-c1    1 CNS ML-DmBG2-c2    1 tumorous blood cells mbn2    0 ovary fGS/OSS    0 ovary OSC    0 ovary OSS    0 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3  (27) Cadmium 50 mM 48 hrs, 4-day adult  (27) Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3  (33) Copper 15 mM 48 hrs, 4-day adult  (49) Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  (55) Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  (29) Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3  (31) Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  (28) Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3  27 Cadmium 50 mM 48 hrs, 4-day adult  27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3  (33) Copper 15 mM 48 hrs, 4-day adult  (49) Zinc 5 mM 12 hrs, larvae L3  (36) Zinc 4.5 mM 48 hrs, 4-day adult  (55) Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3  29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3  31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult  (40) Paraquat 10 mM 48 hrs, 4-day adult  28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    19 cold shock, 4-day adult    18 heat shock, 4-day adult    22 Cadmium 50 mM 6 hrs, larvae L3    20 Cadmium 50 mM 12 hrs, larvae L3    27 Cadmium 50 mM 48 hrs, 4-day adult    27 Cadmium 100 mM 48 hrs, 4-day adult    22 Copper 0.5 mM 12 hrs, larvae L3    33 Copper 15 mM 48 hrs, 4-day adult    49 Zinc 5 mM 12 hrs, larvae L3    36 Zinc 4.5 mM 48 hrs, 4-day adult    55 Ethanol 2.5% 3 hrs, larvae L3    17 Ethanol 5% 3 hrs, larvae L3    29 Ethanol 10% 3 hrs, larvae L3    19 Caffeine 1.5 mg/ml 4 hrs, larvae L3    31 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    22 Caffeine 25 mg/ml 48 hrs, 4-day adult    20 Paraquat 5 mM 48 hrs, 4-day adult    40 Paraquat 10 mM 48 hrs, 4-day adult    28 Rotenone 2 μg 12 hrs, larvae L3    19 Rotenone 8 μg 12 hrs, larvae L3    19 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_18 mE1_20_mRNA_expression_cluster_14
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0050296 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG30296-RD
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of RIC-3 Class Mutagen Stocks Known lesion RIC-3MB00827 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of RIC-3 Class Mutagen Stocks Known lesion RIC-3GD2118 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes RIC-3NIG.15652R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6071 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{NIG.15652R} NA
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system Mi{ET1}RIC-3MB00827 No
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 2 terms )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
chaperone-mediated protein folding inferred from direct assay (Lansdell et al., 2008) protein maturation by protein folding inferred from direct assay (Lansdell et al., 2008)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
unfolded protein binding inferred by curator from GO:0061077 (Lansdell et al., 2008)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
integral to membrane inferred from sequence model (Lansdell et al., 2008)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions RIC-3 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0050296
Orthologs
OrthoDB Orthologs (34) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6QRHPS Dipteran inclusive ortholog search EOG6GB7FK Insect inclusive ortholog search EOG64XHC6 Arthropod inclusive ortholog search EOG66M911 Metazoa inclusive ortholog search EOG63JQZ5
Orthologs in Drosophila Species (EOG6QRHPS)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\RIC-3     Drosophila simulans   Dsim\GD11556 Y   Drosophila sechellia   Dsec\GM15795 Y   Drosophila erecta   Dere\GG22077 Y   Drosophila yakuba   Dyak\GE12158 Y   Drosophila ananassae   Dana\GF11925 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15758 Y   Drosophila persimilis   Dper\GL10143 Y   Drosophila willistoni   Dwil\GK22960 Y   Drosophila virilis   Dvir\GJ21994 Y   Drosophila mojavensis   Dmoj\GI21070 Y   Drosophila grimshawi   Dgri\GH20524 Y
Orthologs in non-Drosophila Dipterans (EOG6GB7FK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL001760   Anopheles gambiae Malaria mosquito  Agam\AGAP005057
Orthologs in non-Dipteran Insects (EOG64XHC6)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB45497   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG004258   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16548   Atta cephalotes Leafcutter ant  Acep\ACEP26394   Camponotus floridanus Florida carpenter ant  Cflo\CFLO14409   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21250   Linepithema humile Argentine ant  Lhum\LH14779   Pogonomyrmex barbatus Red harvester ant  Pbar\PB13616   Solenopsis invicta Red fire ant  Sinv\SINV10440   Acyrthosiphon pisum Pea aphid  Apim\ACYPI000668   Bombyx mori Silkmoth  Bmor\BGIBMGA012664   Pediculus humanus Human body louse  Phum\PHUM200140   Tribolium castaneum Red flour beetle  Tcas\TC011925   Tribolium castaneum Red flour beetle  Tcas\TC000723   Tribolium castaneum Red flour beetle  Tcas\TC010054   Tribolium castaneum Red flour beetle  Tcas\TC005846   Tribolium castaneum Red flour beetle  Tcas\TC009815
Orthologs in non-Insect Arthropods (EOG66M911)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_303490   Ixodes scapularis Deer tick  Isca\ISCW009271
Orthologs in non-Arthropod Metazoa (EOG63JQZ5)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\ric-3
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD11556 Drosophila sechellia Dsec\GM15795 Drosophila erecta Dere\GG22077 Drosophila yakuba Dyak\GE12158 Drosophila ananassae Dana\GF11925 Drosophila pseudoobscura pseudoobscura Dpse\GA15758 Drosophila persimilis Dper\GL10143 Drosophila willistoni Dwil\GK22960 Drosophila virilis Dvir\GJ21994 Drosophila mojavensis Dmoj\GI21070 Drosophila grimshawi Dgri\GH20524
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	22906 y1 w67c23; Mi{ET1}RIC-3MB00827
Genomic Clones ( 2 )
	BACR10P11 BACR16B07 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 94 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	IP15284
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	GH16323 GH27828 RE11714 RE18580 RE37405 RE65192 RH04348 RH04948 RH05033 RH05764 RH21947 RH29072 RH40846 RH45714 RH46592 RH47205 RH58719 RH65163 RH66711 RH68164 RH74342 RH74614
Other clones	15894 28659 28860 29441 31143 31595 46937 100089 120999 146194 149949 156551 161758 166551 194268 214343.68 281117 281914 281980 283276 bs59f11 CK01.104A.H3 CK01.142C.D6 Dmel_dig_016239_0702_1935 EK035504 EK038338 EK087230 EK115847 EK126232 EK136811 EK137220 EK141639 EK161009 EK222832 EK252561 EK255863 EK259324 EK271412 EK291516 EK297362 EK298821 EK306462 EK308043 EK308535 EP01924 GH14953 HL05475 IP15484 IP15584 RH61181 RP004087709 RP004102194 RP004110465 RP004116239 RP004139942 RP004150464 RP004175165 RP004195022 RP004198538 RP004217020 RP004224559 RP004270531 RP004285576 RP004302199 RP004410833 RP004428994 RP004452692 RP004472850 RP004492546 RP004516234 RP004534100
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0050296 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37384
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: RIC-3 CG30296 (Lansdell et al., 2008)
Source for database merge of	Source for merge of: CG15652 CG9349 (FlyBase, 1996-, FlyBase Genome Annotators, 2002-2003)
Additional comments	Annotations CG15652 and CG9349 merged as CG30296 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) Source for merge of CG15652 CG9349 was a shared cDNA (date:010720). (FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_137693 NM_166418 NM_206188 NM_001103919 NM_001103921 NM_001169750 NM_001169751 NM_001169752 NM_001169753 NM_001169754 NM_001169755 NM_001169756 NM_001169757 NM_001169758 NM_001169759 NM_001274184 NM_001274185 RefSeq (Proteins) • NP_611537 NP_726018 NP_995910 NP_001097389 NP_001097391 NP_001163221 NP_001163222 NP_001163223 NP_001163224 NP_001163225 NP_001163226 NP_001163227 NP_001163228 NP_001163229 NP_001163230 NP_001261113 NP_001261114 DDBJ / EMBL / GenBank • AAF46656 AAF46657 AAS64752 ABV53863 ABV53865 ACZ94493 ACZ94494 ACZ94495 ACZ94496 ACZ94497 ACZ94498 ACZ94499 ACZ94500 ACZ94501 ACZ94502 AGB93645 AGB93646 AI238830 AW940572 BI631584 Entrez Gene - A searchable database of RefSeq genes. • 37384 UniProtKB/TrEMBL • E1JGP2 E1JGP3 E1JGP4 E1JGP5 E1JGP6 E1JGP7 E1JGP8 E1JGP9 E1JGQ0 E1JGQ1 Q9W2N3 Q9W2N4 Q058V3
Other Crossreferences
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0050296 DRSC - Results from RNAi screens. • FBgn0050296 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0050296 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG30296-RD FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0050296 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37384 modMine - Data generated by the modENCODE project. • FBgn0050296
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG9349 (Treinin, 2001.3.14, Lansdell et al., 2008) CG15652   CG30296 (Lansdell et al., 2008, Girard et al., 2006, Cammarato et al., 2011, Japanese National Institute of Genetics, 2012.5.21) DmRIC-3 (Lansdell et al., 2008) RIC-3 (Lansdell et al., 2008, )
Name Synonym
Secondary FlyBase IDs
	FBgn0034574 FBgn0034575
References ( 15 )
Research paper	Baycin-Hizal et al., 2011, J. Proteome Res. 10(6): 2777--2784 GlycoFly: A Database of Drosophila N-linked Glycoproteins Identified Using SPEG-MS Techniques. [FBrf0213834] Lansdell et al., 2008, J. Neurochem. 105(5): 1573--1581 Host-cell specific effects of the nicotinic acetylcholine receptor chaperone RIC-3 revealed by a comparison of human and Drosophila RIC-3 homologues. [FBrf0205266] Girard et al., 2006, Dev. Biol. 299(2): 530--542 Chromatin immunoprecipitation reveals a novel role for the Drosophila SoxNeuro transcription factor in axonal patterning. [FBrf0194303]
Supplementary material	Cammarato et al., 2011, PLoS ONE 6(4): Table S1. Proteins & Peptides. [FBrf0214682] Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase	Bellen, 2006.10.16, MBinsertSet693.xml MBinsertSet693.xml [FBrf0191807] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Treinin, 2001.3.14, FlyBase error report for CG9349 on Wed Mar 14 03:46:33 2001. FlyBase error report for CG9349 on Wed Mar 14 03:46:33 2001. [FBrf0135234] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2010-, Gene Ontology (GO) annotation review. Gene Ontology (GO) annotation review. [FBrf0216433] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]