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Gene Dmel\Sgf29

General Information
Symbol	Dmel\Sgf29	Species	D. melanogaster
Name	SAGA-associated factor 29 ortholog	Annotation symbol	CG30390
Feature type	protein_coding_gene	FlyBase ID	FBgn0050390
Gene Model Status	Current	Stock availability	5 publicly available
Also Known As	dSgf29
Genomic Location
Chromosome (arm)	2R	Recombination map
Cytogenetic map	57D8-57D8	Sequence location	2R:17,179,744..17,181,151 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene SAGA-associated factor 29 ortholog is referred to in FlyBase by the symbol Dmel\Sgf29 (CG30390, FBgn0050390). It is a protein_coding_gene from Drosophila melanogaster. There is experimental evidence that it has the molecular function: histone acetyltransferase activity. There is experimental evidence that it is involved in the biological process: histone acetylation; chromatin remodeling. 5 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: SGF29 tudor-like domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1623090_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of Sgf29. Gene sequence location is 2R:17179744..17180981.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03	Polypeptides Sgf29-PB Transcripts Sgf29-RB
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 57D8-57D8   Limits computationally determined from genome sequence between P{EP}CG4266EP2258 and P{EP}CG30394EP962&P{lacW}domk08108
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\Sgf29 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.51
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) Sgf29-RA FBtr0071617  NM_166436   1027   289 Sgf29-RB FBtr0342888     1150   289
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein Sgf29-PA   FBpp0071543   32.1   289   8.95     NP_726051   AAF46707 Sgf29-PB   FBpp0309689   32.1   289   8.95
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • SGF29 tudor-like domain (IPR010750)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE013599 AAF46707   AI259158   BI623388   BT014636   BT030796   CO301556   CO307864   CO326717   EC089040   EC260133
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9W2I4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Ada2/Gcn5/Ada3 transcription activator complex inferred from physical interaction with Ada2a (Suganuma et al., 2008) nucleus inferred from direct assay (Weake et al., 2011, Guelman et al., 2006) SAGA complex inferred from direct assay (Weake et al., 2011, Guelman et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    106.625 Larval Midgut    44.2 Larval Hindgut    35.2 Larval Malpighian Tubules    75.2 Larval Fat Body    42.2 Larval Salivary Gland    62.9 Larval Trachea    65.6 Larval Carcass    37.5 Adult Head    65.3 Adult Eye    67.85 Adult Brain    130.2 Adult Thoracic-Abdominal Ganglion    116.9 Adult Crop    64.5 Adult Midgut    54.7 Adult Hindgut    55.7 Adult Malpighian Tubules    74.8 Adult Fat Body    24.4 Adult Salivary Gland    70.8 Adult Heart    34.025 Adult VirginFemale Spermatheca    47.7 Adult InseminatedFemale Spermatheca    44.7 Adult Ovary    153.3 Adult Testis    33.7 Adult Male Accessory Gland    56.8 Adult Carcass    33.3 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    65.3   NA  Eye    67.85   NA  Brain    130.2   106.625  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    116.9   NA  Crop    64.5   no informative data  Midgut    54.7   no informative data  Hindgut    no informative data   75.2  Malpighian Tubules    74.8   42.2  Fat Body    no informative data   62.9  Salivary Gland    70.8   NA  Heart    34.025   65.6  Trachea    NA   NA  VirginFemale Spermatheca    no informative data   NA  InseminatedFemale Spermatheca    no informative data   NA  Ovary    153.3   NA  Testis    33.7   NA  Male Accessory Gland    no informative data   no informative data  Carcass    no informative data FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    8 central nervous system, larvae L3    7 central nervous system, pupae P8    5 head, virgin 1-day female    3 head, virgin 4-day female    3 head, virgin 20-day female    2 head, mated 1-day female    3 head, mated 4-day female    2 head, mated 20-day female    3 head, mated 1-day male    4 head, mated 4-day male    3 head, mated 20-day male    6 salivary gland, larvae L3 wandering    3 salivary gland, white prepupae    12 digestive system, larvae L3 wandering    10 digestive system, 1-day adult    3 digestive system, 4-day adult    3 digestive system, 20-day adult    3 fat body, larvae L3 wandering    1 fat body, white prepupae    2 fat body, pupae P8    9 carcass, larvae L3 wandering    7 carcass, 1-day adult    2 carcass, 4-day adult    2 carcass, 20-day adult    2 ovary, virgin 4-day female    11 ovary, mated 4-day female    13 testis, mated 4-day male    14 accessory gland, mated 4-day male    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-12 hour embryonic stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (29) embryo 02-04hr  (34) embryo 04-06hr  26 embryo 06-08hr  (28) embryo 08-10hr  (27) embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  29 embryo 02-04hr  (34) embryo 04-06hr  26 embryo 06-08hr  28 embryo 08-10hr  27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    29 embryo 02-04hr    34 embryo 04-06hr    26 embryo 06-08hr    28 embryo 08-10hr    27 embryo 10-12hr    24 embryo 12-14hr    14 embryo 14-16hr    15 embryo 16-18hr    12 embryo 18-20hr    9 embryo 20-22hr    15 embryo 22-24hr    13 larva L1    6 larva L2    4 larva L3 12hr old    4 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    8 larva L3 puffstage 7-9    10 white prepupae new    11 white prepupae 12hr    16 white prepupae 24hr    14 pupae 2d postWPP    10 pupae 3d postWPP    5 pupae 4d postWPP    6 adult male 01day    5 adult male 05day    6 adult male 30day    7 adult female 01day    9 adult female 05day    13 adult female 30day    14 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    12 Schneider line 2 Sg4    6 embryonic 1182-4H    5 embryonic GM2    5 embryonic Kc167    7 embryonic S1    12 embryonic S3    7 leg disc CME L1    4 wing disc CME-W2    2 wing disc ML-DmD8    3 wing disc ML-DmD9    7 wing disc ML-DmD16-c3    7 wing disc ML-DmD21    8 wing disc ML-DmD32    4 haltere disc ML-DmD17-c3    7 eye-antennal disc ML-DmD11    6 antennal disc ML-DmD20-c5    8 mixed discs ML-DmD4-c1    5 CNS ML-DmBG1-c1    6 CNS ML-DmBG2-c2    6 tumorous blood cells mbn2    6 ovary fGS/OSS    7 ovary OSC    7 ovary OSS    2 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    4 cold shock, 4-day adult    2 heat shock, 4-day adult    4 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    6 Cadmium 50 mM 48 hrs, 4-day adult    5 Cadmium 100 mM 48 hrs, 4-day adult    8 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    1 Zinc 5 mM 12 hrs, larvae L3    3 Zinc 4.5 mM 48 hrs, 4-day adult    2 Ethanol 2.5% 3 hrs, larvae L3    13 Ethanol 5% 3 hrs, larvae L3    5 Ethanol 10% 3 hrs, larvae L3    3 Caffeine 1.5 mg/ml 4 hrs, larvae L3    4 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    8 Caffeine 25 mg/ml 48 hrs, 4-day adult    4 Paraquat 5 mM 48 hrs, 4-day adult    8 Paraquat 10 mM 48 hrs, 4-day adult    8 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    3 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_17 mE1_20_mRNA_expression_cluster_04
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0050390 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG30390-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 Sgf29GD10067 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of Sgf29 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 5 )
For All Alleles Carried on Transgenic Constructs Show
Allele of Sgf29 Class Mutagen Stocks Known lesion Sgf29GD10067 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes Sgf29GL00597 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Sgf29HMS01916 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Sgf29KK107577 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes Sgf29NIG.10509R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2R)Exel6074 (Ryder, 2004.4.26) Df(2R)Exel6075 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{NIG.10509R} NA P{TRiP.GL00597} NA P{TRiP.HMS01916} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 7 unique terms )
Terms Based on Experimental Evidence ( 6 terms )
Molecular Function
CV term Evidence References
contributes_to histone acetyltransferase activity inferred from direct assay (Suganuma et al., 2008)
Biological Process
CV term Evidence References
chromatin remodeling inferred from direct assay (Suganuma et al., 2008) histone acetylation inferred from direct assay (Suganuma et al., 2008)
Cellular Component
CV term Evidence References
Ada2/Gcn5/Ada3 transcription activator complex inferred from physical interaction with Ada2a (Suganuma et al., 2008) nucleus inferred from direct assay (Weake et al., 2011, Guelman et al., 2006) SAGA complex inferred from direct assay (Weake et al., 2011, Guelman et al., 2006)
Terms Based on Predictions or Assertions ( 1 term )
Molecular Function
CV term Evidence References
methylated histone residue binding inferred from sequence or structural similarity with human CCDC101 (Curators, 2008--)
Biological Process ( 0 terms)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
protein-protein
Interacting group Assay References
Sgf29 - Ada2a anti tag coimmunoprecipitation, peptide massfingerprinting, molecular sieving (Suganuma et al., 2008, Suganuma et al., 2012) Sgf29 - Atac1 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Atac2 experimental knowledge based, anti tag coimmunoprecipitation, molecular sieving, peptide massfingerprinting (Guruharsha et al., 2011, Suganuma et al., 2012, Suganuma et al., 2008) Sgf29 - CG42678 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Chrac-14 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - D12 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Gcn5 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Hcf anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011) Sgf29 - MBD-R2 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Mes4 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Mocs2 anti tag coimmunoprecipitation, peptide massfingerprinting, anti bait coimmunoprecipitation, western blot, experimental knowledge based (Suganuma et al., 2008, Suganuma et al., 2012, Guruharsha et al., 2011) Sgf29 - NC2β experimental knowledge based (Guruharsha et al., 2011) Sgf29 - Rcd1 experimental knowledge based (Guruharsha et al., 2011) Sgf29 - dik experimental knowledge based (Guruharsha et al., 2011) Sgf29 - wds anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based (Mintseris et al., 2009.11.23, Guruharsha et al., 2011)
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions Sgf29 allele Gene References
External Data
Linkouts	BioGRID - A database of protein and genetic interactions • 63063 DroID - A comprehensive database of gene and protein interactions. • FBgn0050390 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37429
Orthologs
OrthoDB Orthologs (44) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG6VQB8G Dipteran inclusive ortholog search EOG63JCDM Insect inclusive ortholog search EOG63TXRK Arthropod inclusive ortholog search EOG6F1VK4 Metazoa inclusive ortholog search EOG69GZ9W
Orthologs in Drosophila Species (EOG6VQB8G)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\Sgf29     Drosophila simulans   Dsim\GD25209 Y   Drosophila sechellia   Dsec\GM15731 Y   Drosophila erecta   Dere\GG20786 Y   Drosophila yakuba   Dyak\GE13723 Y   Drosophila ananassae   Dana\GF12107 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA15811 Y   Drosophila persimilis   Dper\GL10755 Y   Drosophila willistoni   Dwil\GK21485 Y   Drosophila virilis   Dvir\GJ22385 Y   Drosophila mojavensis   Dmoj\GI20536 Y   Drosophila grimshawi   Dgri\GH21249 Y
Orthologs in non-Drosophila Dipterans (EOG63JCDM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL010025   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL009448   Aedes aegypti Yellow fever mosquito  Aaeg\AAEL013687   Anopheles gambiae Malaria mosquito  Agam\AGAP005116   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ004580
Orthologs in non-Dipteran Insects (EOG63TXRK)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\LOC408702   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG008976   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG003409   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH16318   Atta cephalotes Leafcutter ant  Acep\ACEP20497   Camponotus floridanus Florida carpenter ant  Cflo\CFLO21708   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21335   Linepithema humile Argentine ant  Lhum\LH16450   Pogonomyrmex barbatus Red harvester ant  Pbar\PB17311   Solenopsis invicta Red fire ant  Sinv\SINV26019   Acyrthosiphon pisum Pea aphid  Apim\ACYPI002035   Bombyx mori Silkmoth  Bmor\BGIBMGA001871   Pediculus humanus Human body louse  Phum\PHUM037540   Tribolium castaneum Red flour beetle  Tcas\TC008842
Orthologs in non-Insect Arthropods (EOG6F1VK4)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\JGI_V11_190655   Ixodes scapularis Deer tick  Isca\ISCW014696
Orthologs in non-Arthropod Metazoa (EOG69GZ9W)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\Y17G9B.8   Caenorhabditis elegans Nematode  Cele\T22B7.4   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_028054gn   Danio rerio Zebrafish  Drer\ccdc101   Xenopus tropicalis Western clawed frog  Xtro\ccdc101   Gallus gallus Domestic chicken  Ggal\CCDC101   Mus musculus House mouse  Mmus\Ccdc101   Rattus norvegicus Norway rat  Rnor\Ccdc101   Homo sapiens Human  Hsap\CCDC101   Homo sapiens Human  Hsap\ENSG00000258150   Homo sapiens Human  Hsap\ENSG00000258130
Human Orthologs (3)
Gene OMIM HGNC Hsap\CCDC101     Hsap\ENSG00000258150     Hsap\ENSG00000258130
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD25209 Drosophila sechellia Dsec\GM15731 Drosophila erecta Dere\GG20786 Drosophila yakuba Dyak\GE13723 Drosophila ananassae Dana\GF12107 Drosophila pseudoobscura pseudoobscura Dpse\GA15811 Drosophila persimilis Dper\GL10755 Drosophila willistoni Dwil\GK21485 Drosophila virilis Dvir\GJ22385 Drosophila mojavensis Dmoj\GI20536 Drosophila grimshawi Dgri\GH21249
Stocks & Reagents
Stocks Listed in FlyBase ( 5 )
Bloomington	36637 y1 sc* v1; P{TRiP.GL00597}attP40 39000 y1 sc* v1; P{TRiP.HMS01916}attP2
VDRC	v101326 P{KK107577}VIE-260B v41740 w1118; P{GD10067}v41740 v41739 w1118; P{GD10067}v41739/CyO
Genomic Clones ( 2 )
	BACR12O13 BACR48K03 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 8 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RH55624
Other clones	FI01566
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	LP02508
Other clones	149853 214479.61 EK181408 EK255858 EP04511
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0050390 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37429
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: Sgf29 CG30390 (Weake et al., 2009)
Source for database merge of
Additional comments	Annotation CG10509 split into CG30390 and CG30392 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_166436 RefSeq (Proteins) • NP_726051 DDBJ / EMBL / GenBank • AAF46707 BI623388 Entrez Gene - A searchable database of RefSeq genes. • 37429 UniProtKB/TrEMBL • Q9W2I4
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • SGF29 tudor-like domain (IPR010750)
Linkouts
	BioGRID - A database of protein and genetic interactions • 63063 DroID - A comprehensive database of gene and protein interactions. • FBgn0050390 DRSC - Results from RNAi screens. • FBgn0050390 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0050390 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG30390-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0050390 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 37429 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 37429 modMine - Data generated by the modENCODE project. • FBgn0050390
Synonyms & Secondary IDs ( 5 )
Reported As
Symbol Synonym	CG10509   CG30390 (Furrer et al., 2010, Nagy et al., 2010, Ni et al., 2011.7.19, Keleman et al., 2009.8.5, Weake et al., 2009, Suganuma et al., 2008, Suganuma et al., 2010, Suganuma et al., 2012, Japanese National Institute of Genetics, 2012.5.21, Spedale et al., 2012, Ni et al., 2010.12.1) dSgf29 (Guelman et al., 2006, Weake et al., 2008) Sgf29 (Weake et al., 2011, Weake et al., 2009, Spedale et al., 2012)
Name Synonym	SAGA-associated factor 29 ortholog
Secondary FlyBase IDs
	FBgn0034613
References ( 25 )
Generate a list of	All references relating to this gene ( 25 )
List References by type	Research paper  ( 9 ) Supplementary material  ( 4 ) Review  ( 1 ) Personal communication to FlyBase  ( 7 ) FlyBase analysis  ( 3 ) Stock list  ( 1 )
Recent research papers ( 2 )
	Suganuma et al., 2012, Mol. Cell. Proteomics 11(5): 90--99 A Metazoan ATAC Acetyltransferase Subunit That Regulates Mitogen-activated Protein Kinase Signaling Is Related to an Ancient Molybdopterin Synthase Component. [FBrf0218284] Weake et al., 2011, Genes Dev. 25(14): 1499--1509 Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. [FBrf0214372] Show all research papers ...
Recent reviews ( 1 )
	Spedale et al., 2012, Genes Dev. 26(6): 527--541 ATAC-king the complexity of SAGA during evolution. [FBrf0219841] Show all reviews ...