FB2021_06, released December 14, 2021

Gene: Dmel\Sgf29

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General Information
Symbol
Dmel\Sgf29
Species
D. melanogaster
Name
SAGA-associated factor 29kDa
Annotation Symbol
CG30390
Feature Type
protein_coding_gene
FlyBase ID
FBgn0050390
Gene Model Status
Current
Stock Availability
5 publicly available
Gene Summary
SAGA-associated factor 29kDa (Sgf29) encodes a encodes subunit of some chromatin modifying complexes. [Date last reviewed: 2019-08-01] (FlyBase Gene Snapshot)
All Summaries
Also Known As

dSgf29

Key Links
Genomic Location
Cytogenetic map
57D8-57D8
Sequence location
Recombination map
2-94
RefSeq locus
NT_033778 REGION:21292239..21293646
Sequence
Get Decorated FASTA
Genomic Maps
Other Genome Views
The following external sites may use different assemblies or annotations than FlyBase.
NCBI
UCSC
Ensembl
PopFly
Function
GO Summary Ribbons
Gene Ontology (GO) Annotations (8 terms)
Molecular Function (1 term)
Terms Based on Experimental Evidence (0 terms)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
enables methylated histone binding
inferred from biological aspect of ancestor with PANTHER:PTN000488952
(assigned by GO_Central )
(Gaudet et al., 2011)
inferred from sequence or structural similarity with HGNC:25156
(FlyBase Curators, 2008--)
Biological Process (3 terms)
Terms Based on Experimental Evidence (3 terms)
CV Term
Evidence
References
involved_in chromatin remodeling
inferred from direct assay
(Suganuma et al., 2008)
involved_in histone acetylation
inferred from direct assay
(Suganuma et al., 2008)
involved_in histone H3 acetylation
inferred from direct assay
(Guelman et al., 2006)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
involved_in histone H3 acetylation
inferred from biological aspect of ancestor with PANTHER:PTN000488952
(assigned by GO_Central )
(Gaudet et al., 2011)
Cellular Component (4 terms)
Terms Based on Experimental Evidence (4 terms)
CV Term
Evidence
References
part_of ATAC complex
inferred from direct assay
(Suganuma et al., 2012)
inferred from physical interaction with FLYBASE:Ada2a; FB:FBgn0263738
(Suganuma et al., 2008)
part_of H3 histone acetyltransferase complex
inferred from direct assay
(Torres-Zelada et al., 2019)
located_in nucleus
inferred from direct assay
(Weake et al., 2011, Guelman et al., 2006)
part_of SAGA complex
inferred from direct assay
(Weake et al., 2011, Guelman et al., 2006)
Terms Based on Predictions or Assertions (1 term)
CV Term
Evidence
References
part_of SAGA complex
inferred from biological aspect of ancestor with PANTHER:PTN000488952
(assigned by GO_Central )
(Gaudet et al., 2011)
Gene Group (FlyBase)
Protein Family (UniProt)
-
Protein Signatures (InterPro)
Summaries
Gene Snapshot
SAGA-associated factor 29kDa (Sgf29) encodes a encodes subunit of some chromatin modifying complexes. [Date last reviewed: 2019-08-01]
Gene Group (FlyBase)
ADA COMPLEX -
The Ada2/Gcn5/Ada3 transcription activator (ADA) complex is a Gcn5-containing histone acetyltransferase complex that regulates transcription by acetylating core histones, preferentially histone H3 and nucleosomal substrates. (Adapted from FBrf0242086, FBrf0247978 and FBrf0248705).
CHAT COMPLEX -
The chiffon histone acetyltransferase (CHAT) complex is a unique Gcn5 complex specific to insects that shows characteristic histone acetyltransferase activity towards histone H3. (Adapted from FBrf0241207, FBrf0247978 and FBrf0248705).
ATAC COMPLEX -
The Ada2a-containing (ATAC) complex is a metazoan histone acetyltransferase complex. It positively regulates gene transcription and, although it does not have any intrinsic remodeling activity, facilitates nucleosome sliding of ISWI and SWI-SNF families of chromatin-remodeling complexes. (Adapted from FBrf0204126).
SAGA COMPLEX -
The Spt-Ada-Gcn5 Acetyltransferase (SAGA) complex is a chromatin modifying complex. SAGA can acetylate and deubiquitinate histone residues. Also SAGA has been shown to regulate the transcriptional activation of a subset of genes. (Adapted from FBrf0228923, FBrf0219841 and FBrf0233349).
Gene Model and Products
Number of Transcripts
2
Number of Unique Polypeptides
1

Please see the JBrowse view of Dmel\Sgf29 for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)
Isoform displayed:
Pfam protein domains
InterPro name
classification
start
end
Protein Domains (via SMART)
Isoform displayed:
SMART protein domains
InterPro name
classification
start
end
Comments on Gene Model

Gene model reviewed during 5.51

Sequence Ontology: Class of Gene
nuclear_gene
protein_coding_gene
Transcript Data
Annotated Transcripts
Name
FlyBase ID
RefSeq ID
Length (nt)
Assoc. CDS (aa)
Sgf29-RA
FBtr0071617
NM_166436
1027
289
Sgf29-RB
FBtr0342888
NM_001299744
1150
289
Additional Transcript Data and Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name
FlyBase ID
Predicted MW (kDa)
Length (aa)
Theoretical pI
RefSeq ID
GenBank
Sgf29-PA
FBpp0071543
32.1
289
8.95
NP_726051
AAF46707
Sgf29-PB
FBpp0309689
32.1
289
8.95
NP_001286673
AHN56468
Polypeptides with Identical Sequences

The group(s) of polypeptides indicated below share identical sequence to each other.

289 aa isoforms: Sgf29-PA, Sgf29-PB
Additional Polypeptide Data and Comments
Reported size (kDa)
Comments
External Data
Crossreferences
InterPro - A database of protein families, domains and functional sites
Linkouts
Sequences Consistent with the Gene Model
Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\Sgf29 using the Feature Mapper tool.

External Data
Crossreferences
Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
Linkouts
Expression Data
Expression Summary Ribbons
Colored tiles in ribbon indicate that expression data has been curated by FlyBase for that anatomical location. Colorless tiles indicate that there is no curated data for that location.
For complete stage-specific expression data, view the modENCODE Development RNA-Seq section under High-Throughput Expression below.
Transcript Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
 
Subcellular Localization
CV Term
Evidence
References
part_of ATAC complex
inferred from direct assay
(Suganuma et al., 2012)
inferred from physical interaction with FLYBASE:Ada2a; FB:FBgn0263738
(Suganuma et al., 2008)
part_of H3 histone acetyltransferase complex
inferred from direct assay
(Torres-Zelada et al., 2019)
located_in nucleus
inferred from direct assay
(Weake et al., 2011, Guelman et al., 2006)
part_of SAGA complex
inferred from direct assay
(Weake et al., 2011, Guelman et al., 2006)
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools

GBrowse - Visual display of RNA-Seq signals

View Dmel\Sgf29 in GBrowse 2
RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region
Bulk Downloads
RNA-Seq RPKM values for all genes
Reference
See Gelbart and Emmert, 2013 for analysis details and data files for all genes.
Developmental Proteome: Life Cycle
Developmental Proteome: Embryogenesis
External Data and Images
Linkouts
DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
Flygut - An atlas of the Drosophila adult midgut
Images
FlyBase Wiki
Image Based Resources
Alleles, Insertions, Transgenic Constructs, and Aberrations
Classical and Insertion Alleles ( 0 )
For All Classical and Insertion Alleles Show
 
Other relevant insertions
Transgenic Constructs ( 6 )
For All Alleles Carried on Transgenic Constructs Show
Transgenic constructs containing/affecting coding region of Sgf29
Transgenic constructs containing regulatory region of Sgf29
Aberrations (Deficiencies and Duplications) ( 2 )
Inferred from experimentation ( 2 )
Gene disrupted in
Df(2R)Exel6074
(Ryder, 2004.4.26)
Df(2R)Exel6075
(Ryder, 2004.4.26)
Inferred from location ( 0 )
Alleles Representing Disease-Implicated Variants
Phenotypes
For more details about a specific phenotype click on the relevant allele symbol.
Lethality
Allele
viable, with Dcr-2UAS.cDa, Scer\GAL4elav.PLu
viable, with Scer\GAL4Mef2.PR
viable, with Scer\GAL4pnr-MD237
viable, with Scer\GAL4tin.CΔ4
Phenotype manifest in
Allele
Orthologs
Downloads
Download All DIOPT Orthologs
Download All OrthoDB Orthologs
Human Orthologs (via DIOPT v8.0)
Homo sapiens (Human) (4)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Hsap\SGF29
13 of 15
Yes
Yes
1  
Hsap\LOC388242
1 of 15
No
Yes
Hsap\LOC613038
1 of 15
No
Yes
Hsap\TEK
1 of 15
No
No
Model Organism Orthologs (via DIOPT v8.0)
Mus musculus (laboratory mouse) (1)
Species\Gene Symbol
Score
Best Score
Best Reverse Score
Source
Compara
eggNOG
Hieranoid
Homologene
Inparanoid
Isobase
OMA
OrthoDB
OrthoFinder
OrthoInspector
orthoMCL
Panther
Phylome
RoundUp
TreeFam
ZFIN
Alignment
Complementation?
Transgene?
Mmus\Sgf29
13 of 15
Yes
Yes
Rattus norvegicus (Norway rat) (1)
Rnor\Sgf29
13 of 13
Yes
Yes
Xenopus tropicalis (Western clawed frog) (1)
Xtro\sgf29
9 of 12
Yes
Yes
Danio rerio (Zebrafish) (1)
Drer\sgf29
13 of 15
Yes
Yes
Caenorhabditis elegans (Nematode, roundworm) (2)
Cele\Y17G9B.8
13 of 15
Yes
Yes
Cele\T22B7.4
6 of 15
No
Yes
Arabidopsis thaliana (thale-cress) (2)
Atha\SGF29a
6 of 9
Yes
Yes
Atha\SGF29b
5 of 9
No
Yes
Saccharomyces cerevisiae (Brewer's yeast) (1)
Scer\SGF29
3 of 15
Yes
Yes
Schizosaccharomyces pombe (Fission yeast) (1)
Spom\sgf29
1 of 12
Yes
Yes
Ortholog(s) in Drosophila Species (via OrthoDB v9.1) ( EOG09190D1P )
Organism
Common Name
Gene
AAA Syntenic Ortholog
Multiple Dmel Genes in this Orthologous Group
Drosophila suzukii
Spotted wing Drosophila
Dsuz\DS10_00002219
Drosophila simulans
Dsim\GD25209
Drosophila sechellia
Dsec\GM15731
Drosophila erecta
Dere\GG20786
Drosophila yakuba
Dyak\GE13723
Drosophila ananassae
Dana\GF12107
Drosophila pseudoobscura pseudoobscura
Dpse\GA15811
Drosophila persimilis
Dper\GL10755
Drosophila willistoni
Dwil\GK21485
Drosophila virilis
Dvir\GJ22385
Drosophila mojavensis
Dmoj\GI20536
Drosophila grimshawi
Dgri\GH21249
Orthologs in non-Drosophila Dipterans (via OrthoDB v9.1) ( EOG0915097E )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Musca domestica
House fly
Mdoa\17016231
Glossina morsitans
Tsetse fly
Gmor\GMOY006170
Lucilia cuprina
Australian sheep blowfly
Lcup\FF38_06831
Mayetiola destructor
Hessian fly
Mdes\Mdes004696
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL010025
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL009448
Aedes aegypti
Yellow fever mosquito
Aaeg\AAEL013687
Anopheles darlingi
American malaria mosquito
Adar\ADAC001473
Anopheles gambiae
Malaria mosquito
Agam\AGAP005116
Culex quinquefasciatus
Southern house mosquito
Cqui\CPIJ004580
Orthologs in non-Dipteran Insects (via OrthoDB v9.1) ( EOG090W0A5W )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Bombyx mori
Silkmoth
Bmor\BGIBMGA001871
Danaus plexippus
Monarch butterfly
Dple\DPOGS214657-PA
Heliconius melpomene
Postman butterfly
Hmel\HMEL007686
Apis florea
Little honeybee
Aflo\4074801492
Apis mellifera
Western honey bee
Amel\LOC408702
Bombus impatiens
Common eastern bumble bee
Bimp\BIMP16390
Bombus terrestris
Buff-tailed bumblebee
Bter\15209211
Linepithema humile
Argentine ant
Lhum\LH16450
Megachile rotundata
Alfalfa leafcutting bee
Mrot\MROTU:000b4e
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG008976
Nasonia vitripennis
Parasitic wasp
Nvit\Nasvi2EG003409
Dendroctonus ponderosae
Mountain pine beetle
Dpod\YQE_08769
Tribolium castaneum
Red flour beetle
Tcas\TC008842
Pediculus humanus
Human body louse
Phum\PHUM037540
Rhodnius prolixus
Kissing bug
Rpro\RPRC005276
Rhodnius prolixus
Kissing bug
Rpro\RPRC005193
Rhodnius prolixus
Kissing bug
Rpro\RPRC003077
Cimex lectularius
Bed bug
Clec\CLEC010632
Acyrthosiphon pisum
Pea aphid
Apim\ACYPI002035
Zootermopsis nevadensis
Nevada dampwood termite
Znev\Znev_08113
Orthologs in non-Insect Arthropods (via OrthoDB v9.1) ( EOG090X0A1W )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strigamia maritima
European centipede
Smar\SMAR008942
Ixodes scapularis
Black-legged tick
Isca\ISCW014696
Stegodyphus mimosarum
African social velvet spider
Smim\KFM76307.1
Stegodyphus mimosarum
African social velvet spider
Smim\KFM57408.1
Tetranychus urticae
Two-spotted spider mite
Turt\tetur09g03270
Daphnia pulex
Water flea
Dpux\DAPPUDRAFT_190655
Orthologs in non-Arthropod Metazoa (via OrthoDB v9.1) ( EOG091G0G88 )
Organism
Common Name
Gene
Multiple Dmel Genes in this Orthologous Group
Strongylocentrotus purpuratus
Purple sea urchin
Spur\Sp-Ccdc101
Ciona intestinalis
Vase tunicate
Cint\ENSCING00000012953
Gallus gallus
Domestic chicken
Ggal\CCDC101
Paralogs
Downloads
Download All DIOPT Paralogs
Paralogs (via DIOPT v8.0)
Drosophila melanogaster (Fruit fly) (0)
No records found.
Human Disease Associations
FlyBase Human Disease Model Reports
    Disease Model Summary Ribbon
    Disease Ontology (DO) Annotations
    Models Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Evidence
    References
    Potential Models Based on Orthology ( 0 )
    Human Ortholog
    Disease
    Evidence
    References
    Modifiers Based on Experimental Evidence ( 0 )
    Allele
    Disease
    Interaction
    References
    Disease Associations of Human Orthologs (via DIOPT v8.0 and OMIM)
    Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.
    Homo sapiens (Human)
    Gene name
    Score
    OMIM
    OMIM Phenotype
    DO term
    Complementation?
    Transgene?
    SGF29; SAGA complex associated factor 29
    13 of 15
    613374
         
        Functional Complementation Data
        Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.
        Interactions
        Summary of Physical Interactions
        esyN Network Diagram
        Show neighbor-neighbor interactions:
        Select Layout:
        Legend:
        Protein
        RNA
        Selected Interactor(s)
        Interactions Browser
        View in Interactions Browser
        Please see the Physical Interaction reports below for full details
        protein-protein
        Physical Interaction
        Assay
        References
        Sgf29 - Ada1-2
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Ada2a
        anti tag coimmunoprecipitation, peptide massfingerprinting, molecular sieving
        (Suganuma et al., 2012, Suganuma et al., 2010, Suganuma et al., 2008)
        Sgf29 - Ada2b
        anti tag coimmunoprecipitation, peptide massfingerprinting, affinity chromatography technology, molecular sieving, multidimensional protein identification technology, western blot
        (Soffers et al., 2019, Weake et al., 2011, Weake et al., 2009, Weake et al., 2008)
        Sgf29 - Ada3
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Weake et al., 2009)
        Sgf29 - Atac1
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Weake et al., 2009)
        Sgf29 - Atac2
        anti tag coimmunoprecipitation, peptide massfingerprinting, molecular sieving, experimental knowledge based
        (Suganuma et al., 2012, Guruharsha et al., 2011, Suganuma et al., 2010, Weake et al., 2009, Suganuma et al., 2008)
        Sgf29 - Atxn7
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Mohan et al., 2014, Weake et al., 2009)
        Sgf29 - Chrac-14
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - D12
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Suganuma et al., 2010)
        Sgf29 - Gcn5
        anti tag coimmunoprecipitation, peptide massfingerprinting, experimental knowledge based
        (Guruharsha et al., 2011, Weake et al., 2009)
        Sgf29 - Hcf
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - MBD-R2
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - Mocs2B
        experimental knowledge based, anti tag coimmunoprecipitation, peptide massfingerprinting, western blot, anti bait coimmunoprecipitation
        (Suganuma et al., 2012, Guruharsha et al., 2011, Suganuma et al., 2010, Weake et al., 2009, Suganuma et al., 2008)
        Sgf29 - NC2β
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - Nipped-A
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - PolE4
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - Rcd1
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - ReepA
        experimental knowledge based
        (Guruharsha et al., 2011)
        Sgf29 - Saf6
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Sf3b3
        anti tag coimmunoprecipitation, peptide massfingerprinting, two hybrid
        (Stegeman et al., 2016)
        Sgf29 - Sf3b5
        anti tag coimmunoprecipitation, peptide massfingerprinting, two hybrid
        (Stegeman et al., 2016)
        Sgf29 - Sgf11
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Spt20
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Stegeman et al., 2016, Weake et al., 2009)
        Sgf29 - Spt3
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Stegeman et al., 2016, Weake et al., 2009)
        Sgf29 - Spt7
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Taf10b
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Taf12
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - Taf9
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - e(y)2
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - not
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - wda
        anti tag coimmunoprecipitation, peptide massfingerprinting
        (Weake et al., 2009)
        Sgf29 - wds
        experimental knowledge based
        (Guruharsha et al., 2011)
        Summary of Genetic Interactions
        esyN Network Diagram
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        Starting gene(s)
        Interaction type
        Interacting gene(s)
        Reference
        External Data
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        DroID - A comprehensive database of gene and protein interactions.
        MIST (protein-protein) - An integrated Molecular Interaction Database
        Pathways
        Signaling Pathways (FlyBase)
        Metabolic Pathways
        External Data
        Linkouts
        Genomic Location and Detailed Mapping Data
        Chromosome (arm)
        2R
        Recombination map
        2-94
        Cytogenetic map
        57D8-57D8
        Sequence location
        FlyBase Computed Cytological Location
        Cytogenetic map
        Evidence for location
        57D8-57D8
        Limits computationally determined from genome sequence between P{EP}CG4266EP2258 and P{EP}CG30394EP962&P{lacW}domk08108
        Experimentally Determined Cytological Location
        Cytogenetic map
        Notes
        References
        Experimentally Determined Recombination Data
        Location

        2-94

        (FlyBase, 2016)

        2-101.0

        (Comeron et al., 2012)
        Left of (cM)
        Right of (cM)
        Notes
        Stocks and Reagents
        Stocks (5)
        Genomic Clones (20)
        cDNA Clones (8)
         

        Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.

        cDNA clones, fully sequenced
        BDGP DGC clones
        Other clones
        Drosophila Genomics Resource Center cDNA clones

        For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

        cDNA Clones, End Sequenced (ESTs)
        BDGP DGC clones
        Other clones
        RNAi and Array Information
        Linkouts
        DRSC - Results frm RNAi screens
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        Antibody Information
        Laboratory Generated Antibodies
         
        Commercially Available Antibodies
         
        Other Information
        Relationship to Other Genes
        Source for database identify of

        Source for identity of: Sgf29 CG30390

        (Weake et al., 2009)
        Source for database merge of
        Additional comments

        Annotation CG10509 split into CG30390 and CG30392 in release 3 of the genome annotation.

        (FlyBase Genome Annotators, 2002-2003)
        Other Comments
        Origin and Etymology
        Discoverer
        Etymology
        Identification
        External Crossreferences and Linkouts ( 30 )
        Sequence Crossreferences
        NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.
        GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.
        GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.
        RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.
        UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information
        Other crossreferences
        Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones
        DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species
        EMBL-EBI Single Cell Expression Atlas - Single cell expression across species
        Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.
        FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array
        FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data
        Flygut - An atlas of the Drosophila adult midgut
        GenomeRNAi - A database for cell-based and in vivo RNAi phenotypes and reagents
        iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)
        InterPro - A database of protein families, domains and functional sites
        KEGG Genes - Molecular building blocks of life in the genomic space.
        MARRVEL_MODEL - MARRVEL (model organism gene)
        modMine - A data warehouse for the modENCODE project
        Linkouts
        BioGRID - A database of protein and genetic interactions.
        DroID - A comprehensive database of gene and protein interactions.
        DRSC - Results frm RNAi screens
        FlyCyc Genes - Genes from a BioCyc PGDB for Dmel
        FlyMine - An integrated database for Drosophila genomics
        MIST (protein-protein) - An integrated Molecular Interaction Database
        Synonyms and Secondary IDs (7)
        Datasets (0)
        Study focus (0)
        Experimental Role
        Project
        Project Type
        Title
        References (52)