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Gene Dmel\CG31028

General Information
Symbol	Dmel\CG31028	Species	D. melanogaster
Name		Annotation symbol	CG31028
Feature type	protein_coding_gene	FlyBase ID	FBgn0051028
Gene Model Status	Current	Stock availability	4 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	99E1-99E1	Sequence location	3R:25,992,353..25,996,925 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG31028 (FBgn0051028). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: metal ion binding. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: oxidation-reduction process; superoxide metabolic process. 3 alleles are reported. No phenotypic data is available. It has 2 annotated transcripts and 2 annotated polypeptides. Protein features are: Superoxide dismutase, copper/zinc binding domain. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea. Comments on Affy2 ProbeSet: ProbeSet 1629991_a_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG31028. Gene sequence location is 3R:25992353..25996925.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features HFA15424 BKN26064
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 99E1-99E1   Limits computationally determined from genome sequence between P{PZ}ncd05884 and P{lacW}l(3)s2500s2500
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG31028 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene split based on EST data
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG31028-RC FBtr0290050  NM_170473   3771   1154 CG31028-RD FBtr0290051  NM_170472   3781   1166
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG31028-PC   FBpp0288489   129.4   1154   8.08     NP_733352   AAF57015 CG31028-PD   FBpp0288490   130.9   1166   8.08     NP_733351   AAN14221
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Superoxide dismutase, copper/zinc binding domain (IPR001424)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF57015   AE014297 AAN14221   BI357686   BI365153   BI566540   BI574510   BI585966   BI586344   BI629880   BT011091   CK135632   EC065503   GH841843
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q8IMI9 Q9VA99
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0051028    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0051028 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of extremely low expression. Peak expression observed during late pupal stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0051028 expression level Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr  (266) embryo 10-12hr  (390) embryo 12-14hr  (452) embryo 14-16hr  (953) embryo 16-18hr  (894) embryo 18-20hr  (535) embryo 20-22hr  (117) embryo 22-24hr  (196) larva L1  (146) larva L2  (372) larva L3 12hr old  (258) larva L3 puffstage 1-2  (250) larva L3 puffstage 3-6  (321) larva L3 puffstage 7-9  (282) white prepupae new  (363) white prepupae 12hr  (1008) white prepupae 24hr  (587) pupae 2d postWPP  (1414) pupae 3d postWPP  (403) pupae 4d postWPP  (247) adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP  1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0051028 expression level Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr  (266) embryo 10-12hr  (390) embryo 12-14hr  (452) embryo 14-16hr  (953) embryo 16-18hr  (894) embryo 18-20hr  (535) embryo 20-22hr  117 embryo 22-24hr  (196) larva L1  (146) larva L2  (372) larva L3 12hr old  (258) larva L3 puffstage 1-2  (250) larva L3 puffstage 3-6  (321) larva L3 puffstage 7-9  (282) white prepupae new  (363) white prepupae 12hr  (1008) white prepupae 24hr  (587) pupae 2d postWPP  (1414) pupae 3d postWPP  (403) pupae 4d postWPP  (247) adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP  1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3 embryo 02-04hr    13 embryo 04-06hr    25 embryo 06-08hr    94 embryo 08-10hr    266 embryo 10-12hr    390 embryo 12-14hr    452 embryo 14-16hr    953 embryo 16-18hr    894 embryo 18-20hr    535 embryo 20-22hr    117 embryo 22-24hr    196 larva L1    146 larva L2    372 larva L3 12hr old    258 larva L3 puffstage 1-2    250 larva L3 puffstage 3-6    321 larva L3 puffstage 7-9    282 white prepupae new    363 white prepupae 12hr    1008 white prepupae 24hr    587 pupae 2d postWPP    1414 pupae 3d postWPP    403 pupae 4d postWPP    247 adult male 01day    99 adult male 05day    30 adult male 30day    24 adult female 01day    76 adult female 05day    10 adult female 30day    10 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0051028    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0051028 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval trachea. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0051028 expression level Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0051028 expression level Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut    2.4 Larval Hindgut    46.3 Larval Malpighian Tubules    1.7 Larval Fat Body    2.2 Larval Salivary Gland    7.7 Larval Trachea    107.3 Larval Carcass    64.9 Adult Head no informative data Adult Eye    4.475 Adult Brain    2.9 Adult Thoracic-Abdominal Ganglion    1.2 Adult Crop    40.8 Adult Midgut    3 Adult Hindgut no informative data Adult Malpighian Tubules    2.1 Adult Fat Body    2.6 Adult Salivary Gland    1.4 Adult Heart    4.45 Adult VirginFemale Spermatheca    1.6 Adult InseminatedFemale Spermatheca    2 Adult Ovary    2.6 Adult Testis    7 Adult Male Accessory Gland    1.6 Adult Carcass    9.2 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System no informative data Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head no informative data Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut no informative data Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    no informative data   NA  Eye    4.475   NA  Brain    2.9   no informative data  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    1.2   NA  Crop    40.8   2.4  Midgut    3   46.3  Hindgut    no informative data   1.7  Malpighian Tubules    2.1   2.2  Fat Body    2.6   7.7  Salivary Gland    1.4   NA  Heart    4.45   107.3  Trachea    NA   NA  VirginFemale Spermatheca    1.6   NA  InseminatedFemale Spermatheca    2   NA  Ovary    2.6   NA  Testis    7   NA  Male Accessory Gland    1.6   64.9  Carcass    9.2 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_29
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051028 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31028-RA FlyExpress - Embryonic expression images (BDGP data) • Show all FlyExpress processed images for CG31028 Stages(s) 11-12 Stages(s) 13-16
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable, with Scer\GAL4pnr-MD237 CG31028GD5195 CG31028GD17057 Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of CG31028 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG31028 Class Mutagen Stocks Known lesion CG31028GD17057 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG31028GD5195 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG31028KK106064 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6214 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD5195} NA P{GD17057} NA P{KK106064} NA
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 3 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 3 terms )
Molecular Function
CV term Evidence References
metal ion binding inferred from electronic annotation with InterPro:IPR001424 (FlyBase Curators et al., 2004-)
Biological Process
CV term Evidence References
oxidation-reduction process inferred from electronic annotation with InterPro:IPR001424 (FlyBase Curators et al., 2004-) superoxide metabolic process inferred from electronic annotation with InterPro:IPR001424 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG31028 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0051028
Orthologs
Genome-wide drosophilid orthologs	Dana\GF16197 Dere\GG11957 Dgri\GH18386 Dmoj\GI23378 Dper\GL14064 Dpse\GA26944 Dsec\GM12175 Dsim\GD17268 Dvir\GJ10373 Dwil\GK13146 Dyak\GE23406
Curated drosophilid orthologs	Dpse\GA15948
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL002559-PA Aedes aegypti (mosquito) AGAP001623-PA Anopheles gambiae (mosquito) XP_396814.2 Apis mellifera (honey bee) XP_001946549.1 Acyrthosiphon pisum (pea aphid) 110288 Branchiostoma floridae (lancelet) BGIBMGA002311-PA Bombyx mori (silk worm) CN19104 Caenorhabditis brenneri (small nematode) CBP34542 Caenorhabditis briggsae (nematode) CPIJ017122 Culex pipens (mosquito) 192774 Daphnia pulex (daphnia) ISCW012983-PA Ixodes scapularis (deer tick) 238948 Lottia gigantea (owl limpet) 37745 Monocosta brevicollis (choanoflagellate) XP_001607852.1 Nasonia vitripennis (wasp) PHUM000026-PA Pediculus humanus (human body louse) XP_787771.2 Strongylocentrotus purpuratus (purple sea urchin) 58654 Trichoplax adhaerens (metazoa) XP_974671.2 Tribolium castaneum (red flour beetle) ENSTNIP00000005391 Tetraodon nigroviridis (green spotted pufferfish) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12059 NV10930 LH12163 ISCW012983 FBgn0240596 FBgn0215155 FBgn0197657 FBgn0188830 FBgn0167115 JGI_V11_192774 FBgn0248315 FBgn0151669 FBgn0146104 FBgn0125854 FBgn0104252 FBgn0093219 CPIJ017122 BGIBMGA002311 ACYPI005065 GB14567 AGAP001623 AAEL002559 PHUM228680 GLEAN_11770
Stocks & Reagents
Stocks Listed in FlyBase ( 4 )
VDRC	v100362 P{KK106064}VIE-260B v37901 w1118; P{GD5195}v37901 v46505 w1118; P{GD17057}v46505 v46506 w1118; P{GD17057}v46506/CyO
Genomic Clones ( 1 )
	BACR05L15 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 9 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE50384
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE44223 RH24420 RH25675 RH26274 RH36216
Other clones	118684 RH58813 RP003544885
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0051028 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43586
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Annotation CG2176 split into CG31028 and CG31030 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_170472 NM_170473 RefSeq (Proteins) • NP_733351 NP_733352 DDBJ / EMBL / GenBank • AAF57015 AAN14221 BI365153 BI629880 Entrez Gene - A searchable database of RefSeq genes. • 43586 UniProtKB/TrEMBL • Q8IMI9 Q9VA99
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Superoxide dismutase, copper/zinc binding domain (IPR001424)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0051028 DRSC - Results from RNAi screens. • FBgn0051028 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051028 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31028-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0051028 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43586 InParanoid A subset of ortholog calls from InParanoid. • AAEL002559-PA Aedes aegypti (mosquito) AGAP001623-PA Anopheles gambiae (mosquito) XP_396814.2 Apis mellifera (honey bee) XP_001946549.1 Acyrthosiphon pisum (pea aphid) 110288 Branchiostoma floridae (lancelet) BGIBMGA002311-PA Bombyx mori (silk worm) CN19104 Caenorhabditis brenneri (small nematode) CBP34542 Caenorhabditis briggsae (nematode) CPIJ017122 Culex pipens (mosquito) 192774 Daphnia pulex (daphnia) ISCW012983-PA Ixodes scapularis (deer tick) 238948 Lottia gigantea (owl limpet) 37745 Monocosta brevicollis (choanoflagellate) XP_001607852.1 Nasonia vitripennis (wasp) PHUM000026-PA Pediculus humanus (human body louse) XP_787771.2 Strongylocentrotus purpuratus (purple sea urchin) 58654 Trichoplax adhaerens (metazoa) XP_974671.2 Tribolium castaneum (red flour beetle) ENSTNIP00000005391 Tetraodon nigroviridis (green spotted pufferfish) modMine - Data generated by the modENCODE project. • FBgn0051028 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB12059 NV10930 LH12163 ISCW012983 FBgn0240596 FBgn0215155 FBgn0197657 FBgn0188830 FBgn0167115 JGI_V11_192774 FBgn0248315 FBgn0151669 FBgn0146104 FBgn0125854 FBgn0104252 FBgn0093219 CPIJ017122 BGIBMGA002311 ACYPI005065 GB14567 AGAP001623 AAEL002559 PHUM228680 GLEAN_11770
Synonyms & Secondary IDs ( 2 )
Reported As
Symbol Synonym	CG2176   CG31028 (Keleman et al., 2009.8.5, Ambrus et al., 2009)
Name Synonym
Secondary FlyBase IDs
	FBgn0039750
References ( 9 )
Research paper	Ambrus et al., 2009, Genetics 183(1): 79--92 Mosaic genetic screen for suppressors of the de2f1 mutant phenotype in Drosophila. [FBrf0209056]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]