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Gene Dmel\CG31109

General Information
Symbol	Dmel\CG31109	Species	D. melanogaster
Name		Annotation symbol	CG31109
Feature type	protein_coding_gene	FlyBase ID	FBgn0051109
Gene Model Status	Current	Stock availability	6 publicly available
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	96B19-96B19	Sequence location	3R:20,879,199..20,880,356 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG31109 (FBgn0051109). It is a protein_coding_gene from Drosophila melanogaster. An electronic pipeline based on InterPro domains suggests that it has the molecular function: zinc ion binding. The biological processes in which it is involved are not known. 4 alleles are reported. No phenotypic data is available. It has one annotated transcript and one annotated polypeptide. Protein features are: Zinc finger, AD-type. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult ovary. Comments on Affy2 ProbeSet: ProbeSet 1631719_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CG31109. Gene sequence location is 3R:20879199..20880356.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN32750 HFA14648
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 96B19-96B19   Limits computationally determined from genome sequence between P{PZ}ssh01207 and P{lacW}OstStt3j2D9
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG31109 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG31109-RA FBtr0084791  NM_170194   851   198
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG31109-PA   FBpp0084166   22.0   198   7.53     NP_733073   AAF56387
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, AD-type (IPR012934)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AE014297 AAF56387   AY071126 AAL48748   BI212184   BI215485   BI243272   CO188093   CO193209   CO310756   EC057744   EC076690   EC225161   EC236642
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VBY9
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0051109    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0051109 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of low expression. Peak expression observed within 00-18 hour embryonic stages, in adult female stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0051109 expression level Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3229) embryo 02-04hr  (2592) embryo 04-06hr  (2247) embryo 06-08hr  (1693) embryo 08-10hr  (1926) embryo 10-12hr  (1443) embryo 12-14hr  (1767) embryo 14-16hr  (845) embryo 16-18hr  (1027) embryo 18-20hr  (734) embryo 20-22hr  (805) embryo 22-24hr  (1243) larva L1  (461) larva L2  (453) larva L3 12hr old  (339) larva L3 puffstage 1-2  (445) larva L3 puffstage 3-6  (614) larva L3 puffstage 7-9  (882) white prepupae new  (778) white prepupae 12hr  (915) white prepupae 24hr  (1044) pupae 2d postWPP  (1149) pupae 3d postWPP  (651) pupae 4d postWPP  (348) adult male 01day  (559) adult male 05day  (777) adult male 30day  (693) adult female 01day  (490) adult female 05day  (1439) adult female 30day  (1431) Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3229) embryo 02-04hr  (2592) embryo 04-06hr  (2247) embryo 06-08hr  (1693) embryo 08-10hr  (1926) embryo 10-12hr  1443 embryo 12-14hr  (1767) embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day  1439 adult female 30day  1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0051109 expression level Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr  (3229) embryo 02-04hr  (2592) embryo 04-06hr  (2247) embryo 06-08hr  (1693) embryo 08-10hr  (1926) embryo 10-12hr  (1443) embryo 12-14hr  (1767) embryo 14-16hr  (845) embryo 16-18hr  (1027) embryo 18-20hr  (734) embryo 20-22hr  (805) embryo 22-24hr  (1243) larva L1  (461) larva L2  (453) larva L3 12hr old  (339) larva L3 puffstage 1-2  (445) larva L3 puffstage 3-6  (614) larva L3 puffstage 7-9  (882) white prepupae new  (778) white prepupae 12hr  (915) white prepupae 24hr  (1044) pupae 2d postWPP  (1149) pupae 3d postWPP  (651) pupae 4d postWPP  (348) adult male 01day  (559) adult male 05day  (777) adult male 30day  (693) adult female 01day  (490) adult female 05day  (1439) adult female 30day  (1431) Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr  (3229) embryo 02-04hr  (2592) embryo 04-06hr  2247 embryo 06-08hr  1693 embryo 08-10hr  1926 embryo 10-12hr  1443 embryo 12-14hr  1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day  1439 adult female 30day  1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    3229 embryo 02-04hr    2592 embryo 04-06hr    2247 embryo 06-08hr    1693 embryo 08-10hr    1926 embryo 10-12hr    1443 embryo 12-14hr    1767 embryo 14-16hr    845 embryo 16-18hr    1027 embryo 18-20hr    734 embryo 20-22hr    805 embryo 22-24hr    1243 larva L1    461 larva L2    453 larva L3 12hr old    339 larva L3 puffstage 1-2    445 larva L3 puffstage 3-6    614 larva L3 puffstage 7-9    882 white prepupae new    778 white prepupae 12hr    915 white prepupae 24hr    1044 pupae 2d postWPP    1149 pupae 3d postWPP    651 pupae 4d postWPP    348 adult male 01day    559 adult male 05day    777 adult male 30day    693 adult female 01day    490 adult female 05day    1439 adult female 30day    1431 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0051109    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0051109 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: Expression at moderate levels in the following post-embryonic organs or tissues: larval/adult central nervous system, adult ovary. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0051109 expression level Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0051109 expression level Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    110.75 Larval Midgut    26.3 Larval Hindgut    35.5 Larval Malpighian Tubules    41.8 Larval Fat Body    50.7 Larval Salivary Gland    58 Larval Trachea    89.5 Larval Carcass    35.875 Adult Head    50.5 Adult Eye    65 Adult Brain    132.2 Adult Thoracic-Abdominal Ganglion    102.9 Adult Crop    49.9 Adult Midgut    35.6 Adult Hindgut    40.3 Adult Malpighian Tubules    46.4 Adult Fat Body    31.7 Adult Salivary Gland    88.6 Adult Heart    45.6 Adult VirginFemale Spermatheca    30.9 Adult InseminatedFemale Spermatheca    29.9 Adult Ovary    236.2 Adult Testis    83.3 Adult Male Accessory Gland    59.7 Adult Carcass    37.7 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    50.5   NA  Eye    65   NA  Brain    132.2   110.75  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    102.9   NA  Crop    49.9   26.3  Midgut    35.6   35.5  Hindgut    40.3   41.8  Malpighian Tubules    46.4   50.7  Fat Body    31.7   58  Salivary Gland    88.6   NA  Heart    45.6   89.5  Trachea    NA   NA  VirginFemale Spermatheca    30.9   NA  InseminatedFemale Spermatheca    29.9   NA  Ovary    236.2   NA  Testis    83.3   NA  Male Accessory Gland    59.7   35.875  Carcass    37.7 modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010) mE2_34_mRNA_expression_cluster_01
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051109 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31109-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele viable CG31109f01847 viable, with Scer\GAL4pnr-MD237 CG31109GD8684 Sterility Allele fertile CG31109f01847 Phenotype manifest in Allele
Classical Alleles ( 2 )
For All Classical Alleles Show
Allele of CG31109 Class Mutagen Stocks Known lesion CG31109f01847 piggyBac transposase 2 -- CG31109e02288 1 --
Alleles Carried on Transgenic Constructs ( 2 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG31109 Class Mutagen Stocks Known lesion CG31109GD8684 in vitro construct - RNAi in vitro construct - regulatory fusion 2 Yes CG31109KK112750 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes
Aneuploid Aberrations
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD8684} NA P{KK112750} NA
Insertions
	Type of insertions Name Expression data miscellaneous insertions PBac{RB}CG31109e02288 NA PBac{WH}CG31109f01847 NA
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
zinc ion binding inferred from electronic annotation with InterPro:IPR012934 (FlyBase Curators et al., 2004-)
Biological Process ( 0 terms)
Cellular Component
CV term Evidence References
nucleus inferred from electronic annotation with InterPro:IPR012934 (FlyBase Curators et al., 2004-)
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG31109 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0051109
Orthologs
Genome-wide drosophilid orthologs	Dana\GF17108 Dere\GG12294 Dgri\GH22342 Dmoj\GI23979 Dper\GL21892 Dpse\GA16015 Dsec\GM17760 Dsim\GD18242 Dvir\GJ11182 Dwil\GK14356 Dyak\GE10747
Curated drosophilid orthologs	Dpse\GA16015
Linkouts	InParanoid A subset of ortholog calls from InParanoid. • AAEL004570-PA Aedes aegypti (mosquito) AGAP001400-PA Anopheles gambiae (mosquito) XP_001120653.1 Apis mellifera (honey bee) BGIBMGA013411-PA Bombyx mori (silk worm) 118046 Daphnia pulex (daphnia) XP_001599156.1 Nasonia vitripennis (wasp) PHUM003435-PA Pediculus humanus (human body louse) OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB15458 NV11269 LH20713 FBgn0228590 FBgn0216362 FBgn0198443 FBgn0189776 FBgn0172668 JGI_V11_118046 FBgn0076031 FBgn0159485 FBgn0146703 FBgn0129800 FBgn0104585 FBgn0099099 FBgn0094127 CPIJ017567 ACYPI30749 GB18674 AGAP012943 AGAP011486 AGAP001400 AAEL004570 AAEL003783 PHUM227230 PHUM261500 PHUM361850 PHUM361860 GLEAN_12638 GLEAN_01560
Stocks & Reagents
Stocks Listed in FlyBase ( 6 )
Bloomington	18480 w1118; PBac{WH}CG31109f01847
Harvard	- PBac{RB}CG31109e02288 - PBac{WH}CG31109f01847
VDRC	v104984 P{KK112750}VIE-260B v38857 w1118; P{GD8684}v38857 v38858 w1118; P{GD8684}v38858
Genomic Clones ( 2 )
	BACR03I15 BACR03L02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 10 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	RE17222
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	RE21896 RE40854
Other clones	99990 99994 107938 CK01.44C.G4 EC35288 EK037258 EK222437
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0051109 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43001
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG31109 BcDNA:RE17222 (FlyBase, 1996-)
Additional comments	Source for merge of CG31109 BcDNA:RE17222 was a shared cDNA (date:030728). (FlyBase Genome Annotators, 2002-2003, FlyBase, 1996-)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_170194 RefSeq (Proteins) • NP_733073 DDBJ / EMBL / GenBank • AAF56387 AAL48748 AY071126 BI212184 Entrez Gene - A searchable database of RefSeq genes. • 43001 UniProtKB/TrEMBL • Q9VBY9
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Zinc finger, AD-type (IPR012934)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0051109 DRSC - Results from RNAi screens. • FBgn0051109 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051109 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31109-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0051109 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 43001 InParanoid A subset of ortholog calls from InParanoid. • AAEL004570-PA Aedes aegypti (mosquito) AGAP001400-PA Anopheles gambiae (mosquito) XP_001120653.1 Apis mellifera (honey bee) BGIBMGA013411-PA Bombyx mori (silk worm) 118046 Daphnia pulex (daphnia) XP_001599156.1 Nasonia vitripennis (wasp) PHUM003435-PA Pediculus humanus (human body louse) modMine - Data generated by the modENCODE project. • FBgn0051109 OrthoDB (Arthropod subset) The hierarchical catalog of eukaryotic orthologs. • PB15458 NV11269 LH20713 FBgn0228590 FBgn0216362 FBgn0198443 FBgn0189776 FBgn0172668 JGI_V11_118046 FBgn0076031 FBgn0159485 FBgn0146703 FBgn0129800 FBgn0104585 FBgn0099099 FBgn0094127 CPIJ017567 ACYPI30749 GB18674 AGAP012943 AGAP011486 AGAP001400 AAEL004570 AAEL003783 PHUM227230 PHUM261500 PHUM361850 PHUM361860 GLEAN_12638 GLEAN_01560
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	BcDNA:RE17222   CG13649   CG31109 (Chung et al., 2007, Keleman et al., 2009.8.5)
Name Synonym
Secondary FlyBase IDs
	FBgn0039267 FBgn0047157
References ( 11 )
Research paper	Chung et al., 2007, Mol. Biol. Evol. 24(9): 1934--1943 Lineage-specific expansion of the zinc finger associated domain ZAD. [FBrf0200529]
Supplementary material	The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518]
Personal communication to FlyBase	Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Bloomington Drosophila Stock Center, 2004.11.6, Exelixis insertion alleles that are not in FlyBase. Exelixis insertion alleles that are not in FlyBase. [FBrf0179797] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]
Computer file	BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. Berkeley Drosophila Genome Project. [FBrf0125078]