FlyBase Gene Report: Dmel\salsa

General Information

Symbol

Dmel\salsa

Species

D. melanogaster

Name

salsa

Annotation Symbol

CG31368

Feature Type

protein_coding_gene

FlyBase ID

FBgn0051368

Gene Model Status

Current

Stock Availability

7 publicly available

Enzyme Name (EC)

RNA 3'-5' helicase (5.6.2.6)

Gene Summary

a helicase - a component of the NineTeen Complex (NTC), also known as Pre-mRNA-processing factor 19 (Prp19) complex - regulates distinct spliceosome conformational changes necessary for splicing, rate-limiting for splicing of a subset of small first introns during oogenesis, including the first intron of gurken (Interactive Fly, salsa )

Contribute a Gene Snapshot for this gene.

All Summaries

Alliance
Auto summary
Gene Group
Interactive Fly

Key Links

Genomic Location

Cytogenetic map

87A1-87A1

Sequence location

3R:11,882,790..11,892,382 [+]

Recombination map

3-51

RefSeq locus

NT_033777 REGION:11882790..11892382

Sequence

Get Decorated FASTA

Genomic Maps

JBrowse

Other Genome Views

The following external sites may use different assemblies or annotations than FlyBase.

Function

Gene Ontology (GO) Annotations (10 terms)

Molecular Function (5 terms)

Terms Based on Experimental Evidence (0 terms)

Terms Based on Predictions or Assertions (5 terms)

CV Term

Evidence

References

enables 3'-5' RNA helicase activity

inferred from sequence or structural similarity with UniProtKB:O60306

(Gene Ontology Curators, 2002-)

enables helicase activity

inferred from electronic annotation with InterPro:IPR041677

(InterPro Project Members, 2004-)

enables mRNA binding

inferred from biological aspect of ancestor with PANTHER:PTN000094619

(GO Reference Genome Project, 2011-)

enables RNA binding

inferred from sequence or structural similarity with UniProtKB:O60306

(Gene Ontology Curators, 2002-)

enables single-stranded RNA binding

inferred from sequence or structural similarity with UniProtKB:O60306

(Gene Ontology Curators, 2002-)

Biological Process (1 term)

Terms Based on Experimental Evidence (1 term)

CV Term

Evidence

References

involved_in mRNA splicing, via spliceosome

inferred from mutant phenotype

(Rathore et al., 2020)

Terms Based on Predictions or Assertions (1 term)

CV Term

Evidence

References

involved_in mRNA splicing, via spliceosome

inferred from electronic annotation with InterPro:IPR026300

(InterPro Project Members, 2004-)

inferred by curator from GO:0071011,GO:0071013

(Herold et al., 2009)

Cellular Component (4 terms)

Terms Based on Experimental Evidence (3 terms)

CV Term

Evidence

References

part_of catalytic step 2 spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

part_of precatalytic spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

part_of Prp19 complex

inferred from direct assay

(Guilgur et al., 2014)

Terms Based on Predictions or Assertions (2 terms)

CV Term

Evidence

References

part_of catalytic step 2 spliceosome

inferred from biological aspect of ancestor with PANTHER:PTN000094619

(GO Reference Genome Project, 2011-)

part_of spliceosomal complex

inferred from electronic annotation with InterPro:IPR026300

(InterPro Project Members, 2004-)

Gene Group (FlyBase)

SPLICEOSOME COMPLEX B

SPLICEOSOME COMPLEX C

SPLICEOSOME COMPLEX P

UPF1-LIKE RNA HELICASES

Protein Family (UniProt)

Protein Signatures (InterPro)

Catalytic Activity (EC/Rhea)

3'-5' RNA helicase activity

n ATP + n H2O + wound RNA = n ADP + n phosphate + unwound RNA (5.6.2.6)

Summaries

Gene Group (FlyBase)

SPLICEOSOME COMPLEX B -: Nuclear pre-mRNA splicing is catalyzed by the spliceosome which assembles in a step-wise manner. After the assembly of complex A on pre-mRNA, the U4-U6 and U5 snRNPs are recruited as a preassembled tri-snRNP to form complex B. U5 snRNP binds exons at the 5' site. (Adapted from PMID:24452469 and PMID:23118483).
SPLICEOSOME COMPLEX C -: Nuclear pre-mRNA splicing is catalyzed by the spliceosome which assembles in a step-wise manner. Complex B undergoes a number of structural rearrangements and U4 and U1 snRNPs dissociate to generate complex C, the catalytic spliceosome. (Adapted from PMID:24452469 and PMID:23118483).
SPLICEOSOME COMPLEX P -: Nuclear pre-mRNA splicing is catalyzed by the spliceosome which assembles in a step-wise manner. Complex P, the post-spliceosomal complex, is formed after the catalytic removal of the intron by complex C. Complex P contains the lariat intron and spliced exons. (Adapted from PMID:24452469 and PMID:23118483).
UPF1-LIKE RNA HELICASES -: RNA helicases of helicase superfamily SF1 are also referred to as UPF1-like helicases owing to their similarity with the prototype member, UPF1. SF1 family helicases are thought to mediate their effect by translocation on the nucleic acid, translocating in the 5'-3' direction. UPF1 is a central component of the nonsense mediated mRNA decay (NMD) pathway, which involves the step-wise assembly and disassembly of several protein factors to mediate target mRNA degradation. In the NMD pathway, UPF1 employs its catalytic activity to remodel mRNPs containing premature termination codons. (Adapted from PMID:29378013.)

Summary (Interactive Fly)

Interactive Fly

Gene Model and Products

Number of Transcripts

Number of Unique Polypeptides

Please see the JBrowse view of Dmel\salsa for information on other features

To submit a correction to a gene model please use the Contact FlyBase form

Protein Domains (via Pfam)

Isoform displayed:

Pfam protein domains

InterPro name

classification

start

end

Protein Domains (via SMART)

Isoform displayed:

SMART protein domains

InterPro name

classification

start

end

Structure

Protein 3D structure (Predicted by AlphaFold) (AlphaFold entry Q7KSN8)

If you don't see a structure in the viewer, refresh your browser.

Model Confidence:

Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)

AlphaFold produces a per-residue confidence score (pLDDT) between 0 and 100. Some regions with low pLDDT may be unstructured in isolation.

Experimentally Determined Structures

Crossreferences

Comments on Gene Model

Gene model reviewed during 5.49

Transcript Data

Annotated Transcripts

Name

FlyBase ID

RefSeq ID

Length (nt)

Assoc. CDS (aa)

salsa-RC

FBtr0301041

NM_169439

4621

1483

salsa-RD

FBtr0301042

NM_206476

4630

1486

Additional Transcript Data and Comments

Reported size (kB)

Comments

External Data

Crossreferences

Polypeptide Data

Annotated Polypeptides

Name

FlyBase ID

Predicted MW (kDa)

Length (aa)

Theoretical pI

UniProt

RefSeq ID

GenBank

salsa-PC

FBpp0290263

172.0

1483

6.00

FBpp0290264

172.3

1486

6.00

Q7KSN8

NP_996198

AAS65141

Polypeptides with Identical Sequences

None of the polypeptides share 100% sequence identity.

Additional Polypeptide Data and Comments

Reported size (kDa)

Comments

External Data

Crossreferences

InterPro - A database of protein families, domains and functional sites

Linkouts

Sequences Consistent with the Gene Model

Mapped Features

Click to get a list of regulatory features (enhancers, TFBS, etc.) and gene disruptions (point mutations, indels, etc.) within or overlapping Dmel\salsa using the Feature Mapper tool.

External Data

Crossreferences

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG31368_1

Linkouts

Expression Data

Testis-specificity index

The testis specificity index was calculated from modENCODE tissue expression data by Vedelek et al., 2018 to indicate the degree of testis enrichment compared to other tissues. Scores range from -2.52 (underrepresented) to 5.2 (very high testis bias).

-0.44

Transcript Expression

in situ

Stage

Tissue/Position (including subcellular localization)

Reference

embryonic stage 1 -- 3

organism | ubiquitous

Comment: maternally deposited

(Fisher et al., 2012)

embryonic stage 4 -- 6

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 7 -- 8

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 9 -- 10

organism | ubiquitous

(Fisher et al., 2012)

embryonic stage 11 -- 12

anterior midgut primordium

(Fisher et al., 2012)

central brain primordium

(Fisher et al., 2012)

organism | ubiquitous

(Fisher et al., 2012)

posterior midgut primordium

(Fisher et al., 2012)

ventral nerve cord primordium

(Fisher et al., 2012)

embryonic stage 13 -- 16

embryonic brain

(Fisher et al., 2012)

embryonic/larval midgut

(Fisher et al., 2012)

larval nervous system

(Fisher et al., 2012)

larval visceral muscle cell

(Fisher et al., 2012)

gonad

(Fisher et al., 2012)

organism | faint | ubiquitous

(Fisher et al., 2012)

larval ventral nerve cord

(Fisher et al., 2012)

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Polypeptide Expression

Additional Descriptive Data

Marker for

Subcellular Localization

CV Term

Evidence

References

part_of catalytic step 2 spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

part_of precatalytic spliceosome

inferred from high throughput direct assay

(Herold et al., 2009)

part_of Prp19 complex

inferred from direct assay

(Guilgur et al., 2014)

Expression Deduced from Reporters

High-Throughput Expression Data

Associated Tools

JBrowse - Visual display of RNA-Seq signals

View Dmel\salsa in JBrowse

RNA-Seq by Region - Search RNA-Seq expression levels by exon or genomic region

View exonic expression by developmental stage for Dmel\salsa

View exonic expression by tissue for Dmel\salsa

Bulk Downloads

RNA-Seq RPKM values for all genes

Reference

See Gelbart and Emmert, 2013 for analysis details and data files for all genes.

Developmental Proteome: Life Cycle

Developmental Proteome: Embryogenesis

External Data and Images

Linkouts

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0051368

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

41437/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0051368

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0051368

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0051368

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG31368

Flygut - An atlas of the Drosophila adult midgut

FBgn0051368

Images

FlyExpress - Embryonic expression images (BDGP data)

Show all FlyExpress processed images for Dmel\salsa

Stages(s) 1-3
Stages(s) 4-6
Stages(s) 7-8
Stages(s) 9-10
Stages(s) 11-12
Stages(s) 13-16

FlyBase Wiki

Image Based Resources

Alleles, Insertions, Transgenic Constructs, and Aberrations

Classical and Insertion Alleles ( 11 )

For All Classical and Insertion Alleles Show

Other relevant insertions

Transgenic Constructs ( 6 )

For All Alleles Carried on Transgenic Constructs Show

Transgenic constructs containing/affecting coding region of salsa

Transgenic constructs containing regulatory region of salsa

Aberrations (Deficiencies and Duplications) ( 1 )

Inferred from experimentation ( 1 )

Gene partially disrupted in

Df(3R)mthl5-AD5

(Patel et al., 2016)

Inferred from location ( 13 )

Variants

Variant Molecular Consequences

Alleles Representing Disease-Implicated Variants

Phenotypes

For more details about a specific phenotype click on the relevant allele symbol.

Lethality

Allele

lethal, with Scer\GAL4^nub-AC-62

salsa^HMC03852

lethal | female limited, with Scer\GAL4^dome-PG14

salsa^HMC03852

Sterility

Allele

female sterile, with Scer\GAL4^VP16.otu

salsa^HMC03852

Other Phenotypes

Allele

abnormal cell migration | oogenesis, with Scer\GAL4^c306

salsa^HMC03852

majority die during embryonic stage, with Scer\GAL4^{VP16.nanos.UTR}

visible | embryonic stage, with Scer\GAL4^{VP16.nanos.UTR}

Phenotype manifest in

Allele

border follicle cell, with Scer\GAL4^c306

salsa^HMC03852

dorsal appendage, with Scer\GAL4^{VP16.nanos.UTR}

nurse cell, with Scer\GAL4^{VP16.nanos.UTR}

Orthologs

Downloads

Download All DIOPT Orthologs

Human Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Homo sapiens (Human) (9)

Hsap\AQR

14 of 14

Yes

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

1 of 14

Model Organism Orthologs (via DIOPT v9.1)

Species\Gene Symbol

Score

Best Score

Best Reverse Score

Source

Alignment

Complementation?

Transgene?

Rattus norvegicus (Norway rat) (1)

Rnor\Aqr

14 of 14

Yes

Mus musculus (laboratory mouse) (2)

Mmus\Aqr

14 of 14

Yes

Mmus\Helz2

1 of 14

Xenopus tropicalis (Western clawed frog) (5)

Xtro\aqr

8 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

Danio rerio (Zebrafish) (4)

Drer\aqr

14 of 14

Yes

Drer\helz2a

1 of 14

Drer\helz2b

1 of 14

Yes

Drer\setx

1 of 14

Caenorhabditis elegans (Nematode, roundworm) (5)

Cele\emb-4

13 of 14

Yes

Cele\C05C10.2

1 of 14

Yes

Cele\C44H9.4

1 of 14

Cele\eri-7

1 of 14

Cele\smg-2

1 of 14

Anopheles gambiae (African malaria mosquito) (7)

Agam\AgaP_AGAP004028

11 of 12

Yes

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

1 of 12

Arabidopsis thaliana (thale-cress) (18)

Atha\EMB2765

13 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Yes

1 of 13

1 of 13

1 of 13

1 of 13

1 of 13

Saccharomyces cerevisiae (Brewer's yeast) (4)

Scer\ECM32

1 of 13

Yes

Scer\HCS1

1 of 13

Yes

Scer\NAM7

1 of 13

Yes

Scer\SEN1

1 of 13

Yes

Schizosaccharomyces pombe (Fission yeast) (3)

Spom\cwf11

11 of 12

Yes

Spom\sen1

1 of 12

Spom\SPBC29A10.10c

1 of 12

Escherichia coli (enterobacterium) (0)

Other Organism Orthologs (via OrthoDB)

Data provided directly from OrthoDB:salsa. Refer to their site for version information.

Paralogs

Downloads

Download All DIOPT Paralogs

Paralogs (via DIOPT v9.1)

Gene Symbol

Score

Source

Alignment

Drosophila melanogaster (Fruit fly) (8)

3 of 13

3 of 13

3 of 13

3 of 13

3 of 13

2 of 13

2 of 13

2 of 13

Human Disease Associations

FlyBase Human Disease Model Reports

Disease Ontology (DO) Annotations

Models Based on Experimental Evidence ( 0 )

Allele

Disease

Evidence

References

Potential Models Based on Orthology ( 0 )

Human Ortholog

Disease

Evidence

References

Modifiers Based on Experimental Evidence ( 0 )

Allele

Disease

Interaction

References

Disease Associations of Human Orthologs (via DIOPT v9.1 and OMIM)

Note that ortholog calls supported by only 1 or 2 algorithms (DIOPT score < 3) are not shown.

Homo sapiens (Human)

Gene name

Score

OMIM

OMIM Phenotype

DO term

Complementation?

Transgene?

AQR; aquarius intron-binding spliceosomal factor

14 of 14

610548

Functional Complementation Data

Functional complementation data is computed by FlyBase using a combination of the orthology data obtained from DIOPT and OrthoDB and the allele-level genetic interaction data curated from the literature.

Interactions

Summary of Physical Interactions

esyN Network Diagram

Show neighbor-neighbor interactions:

Off

Show/hide secondary interactors
(data from AllianceMine provided by esyN)

Select Layout:

Force Directed

Circle

Concentric

Legend:

Protein

RNA

Selected Interactor(s)

Other Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please see the Physical Interaction reports below for full details

protein-protein

Physical Interaction

Assay

References

salsa - Prp19

anti tag coimmunoprecipitation, peptide massfingerprinting, western blot

(Rathore et al., 2020, Guilgur et al., 2014)

salsa - fand

anti tag coimmunoprecipitation, peptide massfingerprinting, western blot

(Rathore et al., 2020, Guilgur et al., 2014)

Summary of Genetic Interactions

esyN Network Diagram

Show/hide secondary interactors
(data from AllianceMine provided by esyN)

esyN Network Key:

Suppression

Enhancement

Other Interaction Browsers

View in FlyBase Interactions Browser View in MIST tool (external link)

Please look at the allele data for full details of the genetic interactions

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

salsa

suppressible

grk

(Rathore et al., 2020)

Starting gene(s)

Interaction type

Interacting gene(s)

Reference

grk

suppressible

salsa

(Rathore et al., 2020)

External Data

Linkouts

BioGRID - A database of protein and genetic interactions.

66556

DroID - A comprehensive database of gene and protein interactions.

FBgn0051368

MIST (protein-protein) - An integrated Molecular Interaction Database

41437

Pathways

Signaling Pathways (FlyBase)

Metabolic Pathways

FlyBase

External Links

External Data

Linkouts

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Spliceosome

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

Class of Gene

nuclear_gene

protein_coding_gene

Genomic Location and Detailed Mapping Data

Chromosome (arm)

Recombination map

3-51

Cytogenetic map

87A1-87A1

Sequence location

3R:11,882,790..11,892,382 [+]

FlyBase Computed Cytological Location

Cytogenetic map

Evidence for location

87A1-87A1

Limits computationally determined from genome sequence between P{EP}Lk6^EP886 and P{PZ}svp⁰⁷⁸⁴²

Experimentally Determined Cytological Location

Cytogenetic map

Notes

References

Experimentally Determined Recombination Data

Location

3-51

(FlyBase, 2016)

3-48.9

(Comeron et al., 2012)

Left of (cM)

Right of (cM)

Notes

Stocks and Reagents

Stocks (7)

Aberrations including deletions of this gene Aberrations including duplications of this gene

Bloomington

53812

y¹ w^*; Mi{MIC}salsa^MI10113

23513

w¹¹¹⁸; Mi{ET1}salsa^MB03076 mthl5^MB03076

55172

y¹ sc^* v¹ sev²¹; P{TRiP.HMC03852}attP40

76719

y¹ w^*; Mi{Trojan-GAL4.0}salsa^{MI10113-TG4.0}/TM3, Sb¹ Ser¹

92658

y¹ w^*; TI{CRIMIC.TG4.1}mthl5^{CR02149-TG4.1} salsa^{CR02149-TG4.1-X}/TM3, Sb¹ Ser¹

14730R-2

v110348

Genomic Clones (24)

Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete

cDNA Clones (29)

Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see JBrowse for alignment of the cDNAs and ESTs to the gene model.

cDNA clones, fully sequenced

BDGP DGC clones

Other clones

Drosophila Genomics Resource Center cDNA clones

For each fully sequenced cDNA the DGRC maintains various forms of the cDNA (e.g tagged or untagged) in several different host vectors for subsequent cloning and expression in Drosophila and Drosophila cell lines.

FBgn0051368

cDNA Clones, End Sequenced (ESTs)

BDGP DGC clones

RE41746

Other clones

RNAi and Array Information

Linkouts

DRSC - Results frm RNAi screens

FBgn0051368

Antibody Information

Laboratory Generated Antibodies

Commercially Available Antibodies

Cell Line Information

Publicly Available Cell Lines

Other Stable Cell Lines

Other Comments

Relationship to Other Genes

Source for database merge of

Source for merge of: CG14729 CG14730

(FlyBase Genome Annotators, 2002-2003)

Additional comments

Annotations CG14729 and CG14730 merged as CG31368 in release 3 of the genome annotation.

(FlyBase Genome Annotators, 2002-2003)

Nomenclature History

Source for database identify of

Source for identity of: salsa CG31368

(Rathore et al., 2020)

Nomenclature comments

Etymology

The gene is named 'salsa' based on the interaction of the encoded protein with the fandango protein.

(Rathore et al., 2020)

Synonyms and Secondary IDs (5)

Reported As

Symbol Synonym

CG14729

(Dimova et al., 2003)

CG14730

CG31368

(Lee et al., 2024, Nieken et al., 2023, Miao et al., 2022, Pennemann et al., 2021, Rathore et al., 2020, Gene Disruption Project members, 2018-, Çiçek et al., 2016, Gene Disruption Project members, 2016-, Horan et al., 2015, Guilgur et al., 2014, Le Thomas et al., 2013, Webber et al., 2013, Christis and Munro, 2012, Japanese National Institute of Genetics, 2012.5.21, Ni et al., 2010.12.1, Herold et al., 2009, Keleman et al., 2009.8.5, Liu et al., 2009)

Salsa

(Rathore et al., 2020)

salsa

(Rathore et al., 2020)

Name Synonyms

salsa

Secondary FlyBase IDs

FBgn0037959
FBgn0037961

Datasets (0)

Study focus (0)

Experimental Role

Project

Project Type

Title

Study result (0)

Result

Result Type

Title

External Crossreferences and Linkouts ( 63 )

Sequence Crossreferences

NCBI Gene - Gene integrates information from a wide range of species. A record may include nomenclature, Reference Sequences (RefSeqs), maps, pathways, variations, phenotypes, and links to genome-, phenotype-, and locus-specific resources worldwide.

41437

GenBank Nucleotide - A collection of sequences from several sources, including GenBank, RefSeq, TPA, and PDB.

GenBank Protein - A collection of sequences from several sources, including translations from annotated coding regions in GenBank, RefSeq and TPA, as well as records from SwissProt, PIR, PRF, and PDB.

RefSeq - A comprehensive, integrated, non-redundant, well-annotated set of reference sequences including genomic, transcript, and protein.

UniProt/GCRP - The gene-centric reference proteome (GCRP) provides a 1:1 mapping between genes and UniProt accessions in which a single 'canonical' isoform represents the product(s) of each protein-coding gene.

Q7KSN8

UniProt/TrEMBL - Automatically annotated and unreviewed records of protein sequence and functional information

Other crossreferences

AlphaFold DB - AlphaFold provides open access to protein structure predictions for the human proteome and other key proteins of interest, to accelerate scientific research.

Q7KSN8

BDGP expression data - Patterns of gene expression in Drosophila embryogenesis

FBgn0051368

DRscDB - A single-cell RNA-seq resource for data mining and data comparison across species

41437/tissue=All

EMBL-EBI Single Cell Expression Atlas - Single cell expression across species

FBgn0051368

FlyAtlas2 - A Drosophila melanogaster expression atlas with RNA-Seq, miRNA-Seq and sex-specific data

FBgn0051368

FlyMine - An integrated database for Drosophila genomics

FBgn0051368

InterPro - A database of protein families, domains and functional sites

KEGG Genes - Molecular building blocks of life in the genomic space.

dme:Dmel_CG31368

MARRVEL_MODEL - MARRVEL (model organism gene)

41437

Linkouts

BioGRID - A database of protein and genetic interactions.

66556

Drosophila Genomics Resource Center - Drosophila Genomics Resource Center (DGRC) cDNA clones

FBgn0051368

DroID - A comprehensive database of gene and protein interactions.

FBgn0051368

DRSC - Results frm RNAi screens

FBgn0051368

Eukaryotic Promoter Database - A collection of databases of experimentally validated promoters for selected model organisms.

CG31368_1

FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array

FBgn0051368

FlyCyc Genes - Genes from a BioCyc PGDB for Dmel

FBGN0051368

Fly-FISH - A database of Drosophila embryo and larvae mRNA localization patterns

CG31368

Flygut - An atlas of the Drosophila adult midgut

FBgn0051368

FlyMet - A comprehensive tissue-specific metabolomics resource for Drosophila.

FBgn0051368

iBeetle-Base - RNAi phenotypes in the red flour beetle (Tribolium castaneum)

TC033521

Interactive Fly - A cyberspace guide to Drosophila development and metazoan evolution

Interactive Fly

KEGG Pathways - A collection of manually drawn pathway maps representing knowledge of molecular interaction, reaction and relation networks.

Spliceosome

MIST (protein-protein) - An integrated Molecular Interaction Database

41437

Reactome - An open-source, open access, manually curated and peer-reviewed pathway database.

References (50)

The following external sites may use different assemblies or annotations than FlyBase.

-0.44

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