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Gene Dmel\tRNA:CR31432

General Information
Symbol	Dmel\tRNA:CR31432	Species	D. melanogaster
Name	transfer RNA:CR31432	Annotation symbol	CR31432
Feature type	tRNA_gene	FlyBase ID	FBgn0051432
Gene Model Status	Current	Stock availability	None publicly available
Also Known As	tRNAThr3
Genomic Location
Chromosome (arm)	3R	Recombination map
Cytogenetic map	87B6-87B6	Sequence location	3R:8,148,285..8,148,356 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	The gene transfer RNA:CR31432 is referred to in FlyBase by the symbol Dmel\tRNA:CR31432 (CR31432, FBgn0051432). It is a tRNA_gene from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: ACA codon-amino acid adaptor activity. It is reported to be involved in the biological process: translation. No alleles are reported. It has one annotated transcript. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely low expression to a trough of no expression detected. Peak expression observed during early pupal stages, in adult male stages. CAVEAT: These RNA-Seq temporal profiles depend upon RNA-Seq reads that are uniquely placed in the genome. For this reason, genes such as histones, Stellates and many classes of RNA genes that are present in multiple exact or near exact copies in the genome, expression levels may be reported as much lower than their true values. Summary of FlyAtlas Anatomical Expression Data: No FlyAtlas data available because no Affy2 ProbeSet aligns to an exon of tRNA:CR31432. Comments on Affy2 ProbeSet: No relevant information because no Affy2 ProbeSet aligns to an exon of tRNA:CR31432. Gene sequence location is 3R:8148285..8148356.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 87B6-87B6   Limits computationally determined from genome sequence between P{PZ}svp07842 and P{lacW}Vha55j2E9
Experimentally Determined Cytological Location
Cytogenetic map Notes References 87B-87B   (determined by in situ hybridisation)   (Tonzetich et al., 1990) 87B-87B   (determined by in situ hybridisation)   (Hayashi et al., 1982)
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\tRNA:CR31432 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   tRNA:CR31432-RA FBtr0082616     72
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Treatments RNA-Seq
Expression Clusters
External Data & Images
Linkouts
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 0 )
For All Classical Alleles Show
Allele of tRNA:CR31432 Class Mutagen Stocks Known lesion
Alleles Carried on Transgenic Constructs ( 0 )
For All Alleles Carried on Transgenic Constructs Show
Allele of tRNA:CR31432 Class Mutagen Stocks Known lesion
Aneuploid Aberrations
Disrupted in	Df(3R)Exel6164 (Ryder, 2004.4.26) Df(3R)Exel6165 (Ryder, 2004.4.26) Df(3R)Exel7314 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data
Gene Ontology: Function, Process & Cellular Component ( 4 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 4 terms )
Molecular Function
CV term Evidence References
ACA codon-amino acid adaptor activity inferred from sequence model (Lowe, 2002.3.8) triplet codon-amino acid adaptor activity non-traceable author statement (FlyBase, 1992-)
Biological Process
CV term Evidence References
translation inferred by curator from GO:0033439 (Lowe, 2002.3.8) non-traceable author statement (FlyBase, 1992-)
Cellular Component
CV term Evidence References
cytosol inferred by curator from GO:0033439 (Lowe, 2002.3.8) non-traceable author statement (FlyBase, 1992-)
Sequence Ontology: Class of Gene
	nuclear_gene (Lowe, 2002.3.8) tRNA_gene (Lowe, 2002.3.8)
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions tRNA:CR31432 allele Gene References
External Data
Linkouts
Orthologs
OrthoDB Orthologs (0) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search No orthologs identified Dipteran inclusive ortholog search No orthologs identified Insect inclusive ortholog search No orthologs identified Arthropod inclusive ortholog search No orthologs identified Metazoa inclusive ortholog search No orthologs identified
Orthologs in Drosophila Species (None identified)
No orthologies identified
Orthologs in non-Drosophila Dipterans (None identified)
No non-Drosophilid orthologies identified
Orthologs in non-Dipteran Insects (None identified)
No non-Dipteran orthologies identified
Orthologs in non-Insect Arthropods (None identified)
No non-Insect Arthropod orthologies identified
Orthologs in non-Arthropod Metazoa (None identified)
No non-Arthropod Metazoa orthologies identified
Human Orthologs (0)
Gene OMIM HGNC
AAA Orthologs (0) based on analysis using Dmel annotation version 4.3
No orthologs identified
Stocks & Reagents
Stocks Listed in FlyBase ( 0 )
Genomic Clones ( 1 )
	BACR44K17 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772291
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of	Source for identity of: tRNA:CR31432 CR31432 (FlyBase, 1996-)
Source for database merge of	Source for merge of: CR31432 tRNA:T:TGT:AE002708-b (FlyBase, 1996-)
Additional comments
Other Comments
	New annotation (CR31432) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003) tRNA gene: amino acid=Thr, anticodon=TGT. (FlyBase, 1996-)
External Crossreferences & Linkouts
Sequence Crossreferences
	Entrez Gene - A searchable database of RefSeq genes. • 3772291
Other Crossreferences
Linkouts
	FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0051432 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 3772291 modMine - Data generated by the modENCODE project. • FBgn0051432
Synonyms & Secondary IDs ( 10 )
Reported As
Symbol Synonym	AE002708.trna55-ThrTGT (Lowe, 2002.3.8) CR31432   tRNA:CR31432   tRNA:T3:87BC   tRNA:T:TGT:AE002708-b   tRNA:thr3:87BC   tRNAThr (Guerrero and Maggert, 2008) tRNAThr3 (Tonzetich et al., 1990, Hayashi et al., 1982)
Name Synonym	CR31432   transfer RNA:CR31432   transfer RNA:thr3:87BC
Secondary FlyBase IDs
	FBgn0011989 FBgn0060037
References ( 10 )
Research paper	Tonzetich et al., 1990, J. Mol. Evol. 30(2): 182--188 Conservatism of sites of tRNA loci among the linkage groups of several Drosophila species. [FBrf0052463] Hayashi et al., 1982, Chromosoma 86(2): 279--292 Localization of tRNA genes of Drosophila melanogaster by in situ hybridization. [FBrf0037644] Hayashi et al., 1980, Chromosoma 76: 65--84 Hybridization of tRNAs of Drosophila melanogaster to polytene chromosomes. [FBrf0034275]
Personal communication to FlyBase	Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Lowe, 2002.3.8, tRNAscan-SE analysis of the Drosophila melanogaster genome. tRNAscan-SE analysis of the Drosophila melanogaster genome. [FBrf0145624]
Abstract	Guerrero and Maggert, 2008, A. Dros. Res. Conf. 49: 533B tRNA genes: a potential role as boundary elements in Drosophila melanogaster. Paola Guerrero, Keith Maggert. Department of Biology, Texas A&M University, College Station TX 77843. [FBrf0203843] Hayashi et al., 1980, Genetics 94(4/2): s42--s43 In situ hybridization of tRNAs in Drosophila melanogaster. [FBrf0034923]
FlyBase analysis	FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]