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Gene Dmel\CG31678

General Information
Symbol	Dmel\CG31678	Species	D. melanogaster
Name		Annotation symbol	CG31678
Feature type	protein_coding_gene	FlyBase ID	FBgn0051678
Gene Model Status	Current	Stock availability	11 publicly available
Also Known As	38D.30
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	38D2-38D4	Sequence location	2L:20,659,132..20,675,941 [-]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents Beta	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CG31678 (FBgn0051678). It is a protein_coding_gene from Drosophila melanogaster. Its molecular function is unknown. There is experimental evidence that it is involved in the biological process: lateral inhibition. 10 alleles are reported. The phenotype of these alleles is annotated with: mesothoracic tergum. It has 3 annotated transcripts and 3 annotated polypeptides. Protein features are: Galactose-binding domain-like; Sad1/UNC-like, C-terminal. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. Comments on Affy2 ProbeSet: ProbeSet 1640130_at completely aligns to an exonic region common to each of the 2 FlyBase-annotated transcript isoforms of CG31678. Gene sequence location is 2L:20659132..20675941.
User Contributed Data
	Beta version, feedback welcome
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
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FB2013_03
FB2013_02
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 38D2-38D4   Limits computationally determined from genome sequence between P{lacW}k02501&P{lacW}k14810 and P{PZ}Hr3802306&P{PZ}dia1
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CG31678 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Gene model reviewed during 5.48 Low-frequency RNA-Seq exon junction(s) not annotated. Gene model includes transcripts encoding non-overlapping portions of the full CDS.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt) Associated CDS (aa) CG31678-RB FBtr0290059  NM_165336   4987   1417 CG31678-RC FBtr0290060  NM_001144372   4496   1252 CG31678-RD FBtr0336828  NM_001273706   1174   261
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Polypeptide Data
Annotated Polypeptides
Name FlyBase ID Predicted MW (kDa) Length (aa) Theoretical pI RefSeq ID GenBank protein CG31678-PB   FBpp0288498   154.5   1417   5.04     NP_724277   AAF53910 CG31678-PC   FBpp0288499   137.3   1252   5.15     NP_001137844   ACL83050 CG31678-PD   FBpp0307792   28.2   261   5.89     NP_001260635   AGB93170
Additional Polypeptide Data & Comments
Reported size (kDa)
Comments
External Data
Linkouts
Crossreferences	InterPro domains - A database of protein families, domains, and functional sites • Galactose-binding domain-like (IPR008979) Sad1/UNC-like, C-terminal (IPR012919)
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence Protein sequence Name AA539724   AE014134 AAF53910   AC002443   AC002445   AE014134 ACL83050   AE014134 AGB93170   AI543281   AW942466   AY089453 AAL90191   BF497478   BF498468   BF502762   BF505167   BF506198   BG631966   BG639982   BG640409   BI355294   BI355328   BI640978   BT010056 AAQ22525   CL526143   CO180628   CO186584   CO282487   CO292047   CO304705   CO331272   CO339463   CO339891   CO342656   CZ477009   CZ478952   CZ486734   DN153957   EC057396   EC061344   EC073274   EC201075   EC210820   EC213720   EC217677   EC249047   EC252010   EC252789   ES696137   L80118
UniProtKB/Swiss-Prot
UniProtKB/TrEMBL	Q9VIK7 B7YZY0 Q8T3X4
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Polypeptide Expression
Additional Descriptive Data
Marker for
Subcellular Localization (GO Cellular Component)
CV term Evidence References
Expression Deduced from Reporters
High-Throughput Expression Data
Associated Tools
Reference	See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes.
FlyAtlas Anatomy Microarray
FlyAtlas Anatomical Expression Data (FlyAtlas-RNA.adult) (FlyAtlas-RNA.larva)    Styles Linear Logarithmic Heatmap Back-to-back    Scales gene max expression Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: High or moderate levels of expression observed in all larval and adult organs/tissues. Expression at high levels in the following post-embryonic organs or tissues: adult central nervous system. Expression at moderate levels in the following post-embryonic organs or tissues: adult head, adult eye, larval central nervous system, adult crop, larval/adult midgut, larval/adult hindgut, larval/adult Malpighian tubules, adult heart, larval/adult fat body, larval/adult salivary gland, larval trachea, adult female reproductive system, adult male reproductive system, larval/adult carcass. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (>999.999) Linear, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain  (753.7) Adult Thoracic-Abdominal Ganglion  (939.4) Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  Very high  log, scaled to maximum expression level Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain  753.7 Adult Thoracic-Abdominal Ganglion  (939.4) Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    220.825 Larval Midgut    145.8 Larval Hindgut    154.7 Larval Malpighian Tubules    419.4 Larval Fat Body    210.2 Larval Salivary Gland    440.3 Larval Trachea    146.375 Larval Carcass    130.725 Adult Head    340.1 Adult Eye    296.525 Adult Brain    753.7 Adult Thoracic-Abdominal Ganglion    939.4 Adult Crop    144.4 Adult Midgut    164.4 Adult Hindgut    219.2 Adult Malpighian Tubules    253.3 Adult Fat Body    112.6 Adult Salivary Gland    410.8 Adult Heart    154.2 Adult VirginFemale Spermatheca    101.6 Adult InseminatedFemale Spermatheca    130.9 Adult Ovary    309 Adult Testis    113.4 Adult Male Accessory Gland    457.1 Adult Carcass    135 Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body     Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut     Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body     Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass     FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    340.1   NA  Eye    296.525   NA  Brain    753.7   220.825  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    939.4   NA  Crop    144.4   145.8  Midgut    164.4   154.7  Hindgut    219.2   419.4  Malpighian Tubules    253.3   210.2  Fat Body    112.6   440.3  Salivary Gland    410.8   NA  Heart    154.2   146.375  Trachea    NA   NA  VirginFemale Spermatheca    101.6   NA  InseminatedFemale Spermatheca    130.9   NA  Ovary    309   NA  Testis    113.4   NA  Male Accessory Gland    457.1   130.725  Carcass    135 FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
modENCODE Anatomy RNA-Seq
modENCODE Tissue Expression Data (modENCODE_mRNA-Seq_tissues)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    189 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3    9 central nervous system, pupae P8  (28) head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (189) digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male  26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (189) digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    189 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Extremely high  log, scaled to maximum expression level Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    189 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Moderate expression Tissue   Expression Level imaginal disc, larvae L3 wandering  26 central nervous system, larvae L3    9 central nervous system, pupae P8  28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (189) digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male  26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae  (189) digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Tissue   Expression Level imaginal disc, larvae L3 wandering    26 central nervous system, larvae L3    9 central nervous system, pupae P8    28 head, virgin 1-day female    6 head, virgin 4-day female    6 head, virgin 20-day female    8 head, mated 1-day female    6 head, mated 4-day female    6 head, mated 20-day female    7 head, mated 1-day male    9 head, mated 4-day male    11 head, mated 20-day male    12 salivary gland, larvae L3 wandering    2 salivary gland, white prepupae    189 digestive system, larvae L3 wandering    5 digestive system, 1-day adult    3 digestive system, 4-day adult    5 digestive system, 20-day adult    5 fat body, larvae L3 wandering    2 fat body, white prepupae    9 fat body, pupae P8    14 carcass, larvae L3 wandering    7 carcass, 1-day adult    3 carcass, 4-day adult    5 carcass, 20-day adult    6 ovary, virgin 4-day female    15 ovary, mated 4-day female    12 testis, mated 4-day male    26 accessory gland, mated 4-day male    15 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Tissue   Expression Level imaginal disc, larvae L3 wandering     central nervous system, larvae L3     central nervous system, pupae P8     head, virgin 1-day female     head, virgin 4-day female     head, virgin 20-day female     head, mated 1-day female     head, mated 4-day female     head, mated 20-day female     head, mated 1-day male     head, mated 4-day male     head, mated 20-day male     salivary gland, larvae L3 wandering     salivary gland, white prepupae     digestive system, larvae L3 wandering     digestive system, 1-day adult     digestive system, 4-day adult     digestive system, 20-day adult     fat body, larvae L3 wandering     fat body, white prepupae     fat body, pupae P8     carcass, larvae L3 wandering     carcass, 1-day adult     carcass, 4-day adult     carcass, 20-day adult     ovary, virgin 4-day female     ovary, mated 4-day female     testis, mated 4-day male     accessory gland, mated 4-day male
modENCODE Development RNA-Seq
modENCODE Temporal Expression Data (modENCODE_mRNA-Seq_U)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of moderately high expression to a trough of moderate expression. Peak expression observed within 00-12 hour embryonic stages, at stages throughout the pupal period, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new  (31) white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP  (41) pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Extremely high  log, scaled to maximum expression level Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new  31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP  (41) pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    23 embryo 02-04hr    15 embryo 04-06hr    15 embryo 06-08hr    20 embryo 08-10hr    16 embryo 10-12hr    11 embryo 12-14hr    11 embryo 14-16hr    11 embryo 16-18hr    11 embryo 18-20hr    9 embryo 20-22hr    8 embryo 22-24hr    8 larva L1    8 larva L2    7 larva L3 12hr old    7 larva L3 puffstage 1-2    5 larva L3 puffstage 3-6    9 larva L3 puffstage 7-9    11 white prepupae new    31 white prepupae 12hr    14 white prepupae 24hr    19 pupae 2d postWPP    41 pupae 3d postWPP    14 pupae 4d postWPP    10 adult male 01day    16 adult male 05day    22 adult male 30day    19 adult female 01day    10 adult female 05day    12 adult female 30day    13 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     modENCODE Temporal Expression Data (Graveley et al., 2011)
modENCODE Cell Lines RNA-Seq
modENCODE Cell Line Expression Data (modENCODE_mRNA-Seq_cell.A) (modENCODE_mRNA-Seq_cell.B)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2  (33) ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Extremely high  log, scaled to maximum expression level Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High  log, scaled to Moderate expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2  (38) tumorous blood cells mbn2  (33) ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Cell Line   Expression Level Schneider line 2 S2R+    17 Schneider line 2 Sg4    9 embryonic 1182-4H    15 embryonic GM2    17 embryonic Kc167    14 embryonic S1    22 embryonic S3    13 leg disc CME L1    14 wing disc CME-W2    10 wing disc ML-DmD8    12 wing disc ML-DmD9    11 wing disc ML-DmD16-c3    12 wing disc ML-DmD21    6 wing disc ML-DmD32    9 haltere disc ML-DmD17-c3    14 eye-antennal disc ML-DmD11    14 antennal disc ML-DmD20-c5    5 mixed discs ML-DmD4-c1    7 CNS ML-DmBG1-c1    14 CNS ML-DmBG2-c2    38 tumorous blood cells mbn2    33 ovary fGS/OSS    8 ovary OSC    12 ovary OSS    5 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Cell Line   Expression Level Schneider line 2 S2R+     Schneider line 2 Sg4     embryonic 1182-4H     embryonic GM2     embryonic Kc167     embryonic S1     embryonic S3     leg disc CME L1     wing disc CME-W2     wing disc ML-DmD8     wing disc ML-DmD9     wing disc ML-DmD16-c3     wing disc ML-DmD21     wing disc ML-DmD32     haltere disc ML-DmD17-c3     eye-antennal disc ML-DmD11     antennal disc ML-DmD20-c5     mixed discs ML-DmD4-c1     CNS ML-DmBG1-c1     CNS ML-DmBG2-c2     tumorous blood cells mbn2     ovary fGS/OSS     ovary OSC     ovary OSS
modENCODE Treatments RNA-Seq
modENCODE Treatment Expression Data (modENCODE_mRNA-Seq_treatments)    Styles Linear Logarithmic Heatmap    Scales gene max expression Moderate expression bin max High expression bin max Extremely high expression bin max [download data (TSV)] Guide to modENCODE expression level colors   No/Extremely low expression (0 - 0)   Very low expression (1 - 3)   Low expression (4 - 10)   Moderate expression (11 - 25)   Moderately high expression (26 - 50)   High expression (51 - 100)   Very high expression (101 - 1000)   Extremely high expression (>1000) Linear, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  Linear, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Extremely high  log, scaled to maximum expression level Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate  log, scaled to Moderate expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high  log, scaled to High expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Treatment   Expression Level extended cold, 4-day adult    13 cold shock, 4-day adult    11 heat shock, 4-day adult    8 Cadmium 50 mM 6 hrs, larvae L3    3 Cadmium 50 mM 12 hrs, larvae L3    3 Cadmium 50 mM 48 hrs, 4-day adult    7 Cadmium 100 mM 48 hrs, 4-day adult    15 Copper 0.5 mM 12 hrs, larvae L3    2 Copper 15 mM 48 hrs, 4-day adult    10 Zinc 5 mM 12 hrs, larvae L3    5 Zinc 4.5 mM 48 hrs, 4-day adult    8 Ethanol 2.5% 3 hrs, larvae L3    15 Ethanol 5% 3 hrs, larvae L3    4 Ethanol 10% 3 hrs, larvae L3    4 Caffeine 1.5 mg/ml 4 hrs, larvae L3    5 Caffeine 2.5 mg/ml 48 hrs, 4-day adult    10 Caffeine 25 mg/ml 48 hrs, 4-day adult    9 Paraquat 5 mM 48 hrs, 4-day adult    13 Paraquat 10 mM 48 hrs, 4-day adult    16 Rotenone 2 μg 12 hrs, larvae L3    4 Rotenone 8 μg 12 hrs, larvae L3    4 Expression Level Scale  Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Treatment   Expression Level extended cold, 4-day adult     cold shock, 4-day adult     heat shock, 4-day adult     Cadmium 50 mM 6 hrs, larvae L3     Cadmium 50 mM 12 hrs, larvae L3     Cadmium 50 mM 48 hrs, 4-day adult     Cadmium 100 mM 48 hrs, 4-day adult     Copper 0.5 mM 12 hrs, larvae L3     Copper 15 mM 48 hrs, 4-day adult     Zinc 5 mM 12 hrs, larvae L3     Zinc 4.5 mM 48 hrs, 4-day adult     Ethanol 2.5% 3 hrs, larvae L3     Ethanol 5% 3 hrs, larvae L3     Ethanol 10% 3 hrs, larvae L3     Caffeine 1.5 mg/ml 4 hrs, larvae L3     Caffeine 2.5 mg/ml 48 hrs, 4-day adult     Caffeine 25 mg/ml 48 hrs, 4-day adult     Paraquat 5 mM 48 hrs, 4-day adult     Paraquat 10 mM 48 hrs, 4-day adult     Rotenone 2 μg 12 hrs, larvae L3     Rotenone 8 μg 12 hrs, larvae L3
Expression Clusters
	A cluster of genes with similar mRNA expression dynamics across development. (The modENCODE Consortium, 2010, Graveley et al., 2011) mE2_34_mRNA_expression_cluster_27 mE1_20_mRNA_expression_cluster_09
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051678 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31678-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Lethality Allele lethal | pupal stage, with Scer\GAL4pnr-MD237 CG31678GD411 viable CG31678EY09774 Sterility Allele fertile CG31678EY09774 Other Phenotypes Allele body color defective, with Scer\GAL4pnr-MD237 CG31678GD411 visible, with Scer\GAL4pnr-MD237 CG31678GD411 Phenotype manifest in Allele chaeta | supernumerary, with Scer\GAL4pnr-MD237 CG31678GD411 mesothoracic tergum, with Scer\GAL4pnr-MD237 CG31678GD411
Classical Alleles ( 7 )
For All Classical Alleles Show
Allele of CG31678 Class Mutagen Stocks Known lesion CG31678d09918 P-element activity 3 -- CG31678CB-0652-3 1 -- CG31678e01133 piggyBac transposase 1 -- CG31678EY09774 P-element activity 1 -- CG31678f04203 piggyBac transposase 1 -- CG31678KG07890 P-element activity 1 -- CG31678MI04603 1 --
Alleles Carried on Transgenic Constructs ( 3 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CG31678 Class Mutagen Stocks Known lesion CG31678GD411 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG31678KK100542 in vitro construct - RNAi in vitro construct - regulatory fusion 1 Yes CG31678NIG.17465R in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel7078 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data UAS construct P{GD411} NA P{KK100542} NA P{NIG.17465R} NA
Insertions
	Type of insertions Name Expression data insertion of mobile activating element P{EPgy2}CG31678EY09774 NA P{XP}CG31678d09918 NA miscellaneous insertions Mi{MIC}CG31678MI04603 NA P{RS3}CG31678CB-0652-3 NA P{SUPor-P}CG31678KG07890 NA P{SUPor-P}KG10394 NA PBac{RB}CG31678e01133 NA PBac{WH}CG31678f04203 NA
Gene Ontology: Function, Process & Cellular Component ( 1 unique term )
Terms Based on Experimental Evidence ( 1 term )
Molecular Function ( 0 terms)
Biological Process
CV term Evidence References
lateral inhibition inferred from mutant phenotype (Mummery-Widmer et al., 2009)
Cellular Component ( 0 terms)
Terms Based on Predictions or Assertions ( 0 terms )
Sequence Ontology: Class of Gene
	nuclear_gene   protein_coding_gene
Interactions & Pathways
Summary of Physical Interactions
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CG31678 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0051678 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35327
Orthologs
OrthoDB Orthologs (41) - based on analysis using Dmel annotation version 5.41
OrthoDB Ortholog Groups
	OrthoDB orthology group searches (Waterhouse et al., 2011, Nucleic Acids Res. 39(Database issue): D283--D288) Drosophila inclusive ortholog search EOG64XK28 Dipteran inclusive ortholog search EOG6RBQSP Insect inclusive ortholog search EOG6T76Z8 Arthropod inclusive ortholog search EOG6V6WXM Metazoa inclusive ortholog search EOG6F28W3
Orthologs in Drosophila Species (EOG64XK28)
Organism Common Name Gene AAA Syntenic Ortholog Multiple Dmel Genes in this Orthologous Group Drosophila melanogaster fruit fly  Dmel\CG31678     Drosophila simulans   Dsim\GD21690 Y   Drosophila sechellia   Dsec\GM23316 Y   Drosophila erecta   Dere\GG21560 Y   Drosophila yakuba   Dyak\GE13552 Y   Drosophila ananassae   Dana\GF14555 Y   Drosophila pseudoobscura pseudoobscura   Dpse\GA26023 Y   Drosophila persimilis   Dper\GL19600 Y   Drosophila persimilis   Dper\GL14568     Drosophila willistoni   Dwil\GK15092 Y   Drosophila virilis   Dvir\GJ17429 Y   Drosophila mojavensis   Dmoj\GI19642 Y   Drosophila grimshawi   Dgri\GH10851 Y
Orthologs in non-Drosophila Dipterans (EOG6RBQSP)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Aedes aegypti Yellow fever mosquito  Aaeg\AAEL002235   Anopheles gambiae Malaria mosquito  Agam\AGAP008473   Culex quinquefasciatus Southern house mosquito  Cqui\CPIJ003500
Orthologs in non-Dipteran Insects (EOG6T76Z8)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Apis mellifera Western honey bee  Amel\GB55936   Nasonia vitripennis Parasitic wasp  Nvit\Nasvi2EG012930   Acromyrmex echinatior Panamanian leafcutter ant  Aech\AECH20808   Atta cephalotes Leafcutter ant  Acep\ACEP13764   Camponotus floridanus Florida carpenter ant  Cflo\CFLO18653   Harpegnathos saltator Jerdons jumping ant  Hsal\HSAL21219   Linepithema humile Argentine ant  Lhum\LH22721   Pogonomyrmex barbatus Red harvester ant  Pbar\PB19037   Acyrthosiphon pisum Pea aphid  Apim\ACYPI009282   Bombyx mori Silkmoth  Bmor\BGIBMGA006036   Pediculus humanus Human body louse  Phum\PHUM248060   Tribolium castaneum Red flour beetle  Tcas\TC013018
Orthologs in non-Insect Arthropods (EOG6V6WXM)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Daphnia pulex Water flea  Dpux\COI   Daphnia pulex Water flea  Dpux\JGI_V11_335634   Daphnia pulex Water flea  Dpux\COI   Daphnia pulex Water flea  Dpux\COI   Ixodes scapularis Deer tick  Isca\ISCW000835
Orthologs in non-Arthropod Metazoa (EOG6F28W3)
Organism Common Name Gene Multiple Dmel Genes in this Orthologous Group Caenorhabditis elegans Nematode  Cele\R12E2.2   Strongylocentrotus purpuratus Purple sea urchin  Spur\SPU_004147gn   Danio rerio Zebrafish  Drer\si:ch211-184m19.1   Xenopus tropicalis Western clawed frog  Xtro\c1orf9   Gallus gallus Domestic chicken  Ggal\C1orf9   Mus musculus House mouse  Mmus\AI848100   Rattus norvegicus Norway rat  Rnor\Dd25   Homo sapiens Human  Hsap\C1orf9
Human Orthologs (1)
Gene OMIM HGNC Hsap\C1orf9
AAA Orthologs (11) based on analysis using Dmel annotation version 4.3
Organism Gene Drosophila simulans Dsim\GD21690 Drosophila sechellia Dsec\GM23316 Drosophila erecta Dere\GG21560 Drosophila yakuba Dyak\GE13552 Drosophila ananassae Dana\GF14555 Drosophila pseudoobscura pseudoobscura Dpse\GA26023 Drosophila persimilis Dper\GL19600 Drosophila willistoni Dwil\GK15092 Drosophila virilis Dvir\GJ17429 Drosophila mojavensis Dmoj\GI19642 Drosophila grimshawi Dgri\GH10851
Stocks & Reagents
Stocks Listed in FlyBase ( 11 )
Bloomington	8400 w1118; P{XP}CG31678d09918 P{neoFRT}42D 8403 w1118; P{XP}CG31678d09918 P{neoFRT}40A 17601 y1 w67c23; P{EPgy2}CG31678EY09774 38140 y1 w*; Mi{MIC}CG31678MI04603/SM6a 14926 y1; P{SUPor-P}CG31678KG07890/CyO; ry506
Harvard	- P{XP}CG31678d09918 - PBac{RB}CG31678e01133 - PBac{WH}CG31678f04203
Kyoto	123272 w1118; P{RS3}CG31678CB-0652-3
VDRC	v103705 P{KK100542}VIE-260B v1473 w1118; P{GD411}v1473/CyO
Genomic Clones ( 1 )
	BACR31P14 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 31 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones	AT26765 LD18032
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones	AT07340 AT08610 AT11654 AT12879 AT18575 GM30393 SD09817 SD09989 SD11421 SD24031
Other clones	32317 39780 43207 71091 103442 122903 214435.4 214449.5 EC02934 EK021335 EK141911 EK160601 EK199054 EK245823 EK298958 EP02048 EP09561 EP15301 GM30293
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0051678 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35327
Antibody Information
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of	Source for merge of: CG17465 CG17466 (FlyBase Genome Annotators, 2002-2003)
Additional comments	Annotations CG17465 and CG17466 merged as CG31678 in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
Other Comments
External Crossreferences & Linkouts
Sequence Crossreferences
	RefSeq (Transcripts) • NM_165336 NM_001144372 NM_001273706 RefSeq (Proteins) • NP_724277 NP_001137844 NP_001260635 DDBJ / EMBL / GenBank • AA539724 AAF53910 AAL90191 AAQ22525 AC002443 AC002445 ACL83050 AGB93170 AW942466 AY089453 BG631966 BT010056 CL526143 CZ477009 CZ478952 CZ486734 L80118 Entrez Gene - A searchable database of RefSeq genes. • 35327 UniProtKB/TrEMBL • B7YZY0 Q8T3X4 Q9VIK7
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Galactose-binding domain-like (IPR008979) Sad1/UNC-like, C-terminal (IPR012919)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0051678 DRSC - Results from RNAi screens. • FBgn0051678 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051678 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31678-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0051678 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 35327 InterologFinder Protein-protein interactions (PPI) from both known and predicted PPI data sets. • 35327 modMine - Data generated by the modENCODE project. • FBgn0051678
Synonyms & Secondary IDs ( 4 )
Reported As
Symbol Synonym	38D.30 (McGill Drosophila Genome Project, 2001.9.25, Butler, 2001, Butler et al., 2001) CG17465   CG17466   CG31678 (Immonen and Ritchie, 2012, Keleman et al., 2009.8.5, Japanese National Institute of Genetics, 2012.5.21)
Name Synonym
Secondary FlyBase IDs
	FBgn0032874 FBgn0032875
References ( 19 )
Research paper	Immonen and Ritchie, 2012, Proc. Biol. Sci. 279(1732): 1359--1365 The genomic response to courtship song stimulation in female Drosophila melanogaster. [FBrf0217554] Butler et al., 2001, Genetics 158(4): 1597--1614 Map position and expression of the genes in the 38 region of Drosophila. [FBrf0138405]
Supplementary material	Graveley et al., 2011, Nature 471(7339): Supplementary Table 33. Fuzzy Cluster Members. [FBrf0213980] The modENCODE Consortium, 2010, Science 330(6012): DataS14: Gene co-expression clusters. [FBrf0213979] Mummery-Widmer et al., 2009, Nature 458(7241): Supplementary Table 2 - Genome-wide bristle screen results. [FBrf0214518] Butler, 2001, Genetics 158(4): Supplemental Material 3. Gene predictions and transcripts of the cytological region 38. [FBrf0139854]
Personal communication to FlyBase	Bellen, 2012.3.15, set978.xml set978.xml [FBrf0217771] Keleman et al., 2009.8.5, RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi-phiC31 construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0208510] Dickson et al., 2007.7.18, RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center RNAi construct and insertion data submitted by the Vienna Drosophila RNAi Center [FBrf0200327] Gene Disruption Project members and Exelixis, 2005, Genomic mapping of Exelixis insertion collection. (Computer file) Genomic mapping of Exelixis insertion collection. (Computer file) [FBrf0184340] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335] Gene Disruption Project members, 2001-, (Computer file) (Computer file) [FBrf0132177] McGill Drosophila Genome Project, 2001.9.25, FASTA sequences of Gene Predictions of the 38 region. FASTA sequences of Gene Predictions of the 38 region. [FBrf0139855] BDGP Project Members, 2000-, Berkeley Drosophila Genome Project. (Computer file) Berkeley Drosophila Genome Project. (Computer file) [FBrf0125078]
FlyBase analysis	FlyBase Curators, 2008, Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. Insertion identifiers and alleles based on genomic location of insertions with respect to gene annotations. [FBrf0202955] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1992-, FlyBase curation. FlyBase curation. [FBrf0105495]
Stock list	Japanese National Institute of Genetics, 2012.5.21, RNAi stocks available from NIG-FLY. RNAi stocks available from NIG-FLY. [FBrf0218457]