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Gene Dmel\CR31824

General Information
Symbol	Dmel\CR31824	Species	D. melanogaster
Name		Annotation symbol	CR31824
Feature type	pseudogene_attribute	FlyBase ID	FBgn0051824
Gene Model Status	Current	Stock availability	1 publicly available
Genomic Location
Chromosome (arm)	2L	Recombination map
Cytogenetic map	35D6-35D6	Sequence location	2L:15,887,905..15,888,583 [+]
Genomic Maps Select View:Gene Models/EvidenceExpression/RegulationMegaViewGene Disruptions, Stocks and Reagents modENCODE GBrowse	Decorated FastA GenBankGFF Gene region Extended Gene region CDSIntronsExonsTranslationsTranscripts3' UTR5' UTR
Summary Information
Automatically generated summary See sections below for more information	This gene is referred to in FlyBase by the symbol Dmel\CR31824 (FBgn0051824). It is a pseudogene_attribute from Drosophila melanogaster. Based on sequence similarity, it is predicted to have molecular function: serine-type endopeptidase activity. An electronic pipeline based on InterPro domains suggests that it is involved in the biological process: proteolysis. 2 alleles are reported. No phenotypic data is available. It has one annotated transcript. Protein features are: Peptidase S1/S6, chymotrypsin/Hap; Peptidase cysteine/serine, trypsin-like. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely low expression to a trough of no expression detected. Peak expression observed within 12-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult male stages. Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. Comments on Affy2 ProbeSet: ProbeSet 1636212_at completely aligns to an exonic region of the only FlyBase-annotated transcript isoform of CR31824. Gene sequence location is 2L:15887905..15888583.
Recent Updates
Description	What does this section display? This section contains items that were added to this record for each release. It currently only tracks new links between this FlyBase report and other FlyBase data classes (e.g. genes, references, stocks) or controlled vocabulary terms (e.g. GO, anatomy terms). What does this section not display? This section does not currently display links that were removed or gene model changes.
Update Feed	Click the icon below to subscribe to this FlyBase record and receive updates automatically through your feed reader.
FB2011_10
FB2012_01	Sequence features BKN25053 HFA01517
All updates	Click here to see a list of all updates to this record from FB2010_08 and on.
Detailed Mapping Data
FlyBase Computed Cytological Location
Cytogenetic map Evidence for location 35D6-35D6   Limits computationally determined from genome sequence between P{lacW}CycEk05007&P{lacW}CycEk02602 and P{EP}crpEP721&P{lacW}crpk07829
Experimentally Determined Cytological Location
Cytogenetic map Notes References
Experimentally Determined Recombination Data
Location
Left of (cM)
Right of (cM)
Notes
Gene Model & Products
Please see the GBrowse view of Dmel\CR31824 for information on other features To submit a correction to a gene model please use the Contact FlyBase form
Comments on Gene Model
	Pseudogene similar to trypsins; dispersed family; partial.
Transcript Data
Annotated Transcripts
Name FlyBase ID RefSeq ID Length (nt)   CR31824-RB FBtr0303311     679
Additional Transcript Data & Comments
Reported size (kB)
Comments
External Data
Crossreferences
Sequences Consistent with the Gene Model
DDBJ / EMBL / GenBank	DNA sequence   Name
Mapped Features
Mapped Features have been reorganized, please see this article for details. Additional mapped features and mutations can be found on GBrowse or related reports. Type Symbol & Location Additional Notes References
External Data
Linkouts
Crossreferences
Expression Data
Transcript Expression
Additional Descriptive Data
Marker for
Subcellular Localization
CV Term
Notes
High-Throughput Expression Data
or
See Gelbart and Emmert, 2010.10.13 for analysis details and data files for all genes. modENCODE Temporal Expression Data for FBgn0051824    Styles Linear Logarithmic Heatmap    Scales max expr for FBgn0051824 Very low expression bin max Moderate expression bin max High expression bin max Extremely high expression bin max Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of extremely low expression to a trough of no expression detected. Peak expression observed within 12-24 hour embryonic stages, during late larval stages, at stages throughout the pupal period, in adult male stages. [download data (TSV)] Guide to modENCODE expression level colors   No expression (0 - 0)   Extremely low expression (1 - 10)   Very low expression (11 - 100)   Low expression (101 - 400)   Moderate expression (401 - 1400)   Moderately high expression (1401 - 4000)   High expression (4001 - 10000)   Very high expression (10001 - 100000)   Extremely high expression (100001 - 2000000) Linear, scaled to maximum FBgn0051824 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low  Linear, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  Linear, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  Linear, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  Linear, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  log, scaled to maximum FBgn0051824 expression level Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low  log, scaled to Very low expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low  log, scaled to Moderate expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high  log, scaled to High expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high  log, scaled to Extremely high expression Developmental Stage   Expression Level embryo 00-02hr    0 embryo 02-04hr    0 embryo 04-06hr    0 embryo 06-08hr    0 embryo 08-10hr    0 embryo 10-12hr    0 embryo 12-14hr    0 embryo 14-16hr    3 embryo 16-18hr    0 embryo 18-20hr    1 embryo 20-22hr    0 embryo 22-24hr    0 larva L1    0 larva L2    0 larva L3 12hr old    0 larva L3 puffstage 1-2    0 larva L3 puffstage 3-6    7 larva L3 puffstage 7-9    2 white prepupae new    3 white prepupae 12hr    5 white prepupae 24hr    10 pupae 2d postWPP    5 pupae 3d postWPP    1 pupae 4d postWPP    1 adult male 01day    2 adult male 05day    1 adult male 30day    0 adult female 01day    0 adult female 05day    0 adult female 30day    0 Expression Level Scale  None   Extremely low   Very low   Low   Moderate   Moderately high   High   Very high   Extremely high  Heatmap Developmental Stage   Expression Level embryo 00-02hr     embryo 02-04hr     embryo 04-06hr     embryo 06-08hr     embryo 08-10hr     embryo 10-12hr     embryo 12-14hr     embryo 14-16hr     embryo 16-18hr     embryo 18-20hr     embryo 20-22hr     embryo 22-24hr     larva L1     larva L2     larva L3 12hr old     larva L3 puffstage 1-2     larva L3 puffstage 3-6     larva L3 puffstage 7-9     white prepupae new     white prepupae 12hr     white prepupae 24hr     pupae 2d postWPP     pupae 3d postWPP     pupae 4d postWPP     adult male 01day     adult male 05day     adult male 30day     adult female 01day     adult female 05day     adult female 30day     FlyAtlas Anatomical Expression Data for FBgn0051824    Styles Linear Logarithmic Heatmap Back-to-back    Scales max expr for FBgn0051824 Moderate expression bin max High level expression bin max Very high expression bin max Summary of FlyAtlas Anatomical Expression Data: No expression detected in any larval or adult organs/tissues. [download data (TSV)] Guide to FlyAtlas expression level colors   No expression (0 - 9.999)   Low expression (10 - 99.999)   Moderate expression (100 - 499.999)   High level expression (500 - 999.999)   Very high expression (1000 - 25000) Linear, scaled to maximum FBgn0051824 expression level Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low  Linear, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  Linear, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Linear, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to maximum FBgn0051824 expression level Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low  log, scaled to Moderate expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High  log, scaled to High level expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  log, scaled to Very high expression Tissue   Expression Level Larval Central Nervous System    6 Larval Midgut    2.6 Larval Hindgut    5.9 Larval Malpighian Tubules    8 Larval Fat Body no informative data Larval Salivary Gland    8.5 Larval Trachea    1.775 Larval Carcass    9.825 Adult Head    7.2 Adult Eye    0.95 Adult Brain    5 Adult Thoracic-Abdominal Ganglion    6.7 Adult Crop    7.9 Adult Midgut no informative data Adult Hindgut    6.6 Adult Malpighian Tubules    7.2 Adult Fat Body no informative data Adult Salivary Gland    6.1 Adult Heart    1.175 Adult VirginFemale Spermatheca    6.8 Adult InseminatedFemale Spermatheca    6.6 Adult Ovary    5 Adult Testis    4.6 Adult Male Accessory Gland    6.9 Adult Carcass no informative data Expression Level Scale  None   Low   Moderate   High   Very high  Heatmap Tissue   Expression Level Larval Central Nervous System     Larval Midgut     Larval Hindgut     Larval Malpighian Tubules     Larval Fat Body no informative data Larval Salivary Gland     Larval Trachea     Larval Carcass     Adult Head     Adult Eye     Adult Brain     Adult Thoracic-Abdominal Ganglion     Adult Crop     Adult Midgut no informative data Adult Hindgut     Adult Malpighian Tubules     Adult Fat Body no informative data Adult Salivary Gland     Adult Heart     Adult VirginFemale Spermatheca     Adult InseminatedFemale Spermatheca     Adult Ovary     Adult Testis     Adult Male Accessory Gland     Adult Carcass no informative data FlyAtlas Organ/Tissue Expression, larval vs. adult Larval Expression Level Tissue Adult Expression Level   NA  Head    7.2   NA  Eye    0.95   NA  Brain    5   6  Central Nervous System    NA   NA  Thoracic-Abdominal Ganglion    6.7   NA  Crop    7.9   2.6  Midgut    no informative data   5.9  Hindgut    6.6   8  Malpighian Tubules    7.2   no informative data  Fat Body    no informative data   8.5  Salivary Gland    6.1   NA  Heart    1.175   1.775  Trachea    NA   NA  VirginFemale Spermatheca    6.8   NA  InseminatedFemale Spermatheca    6.6   NA  Ovary    5   NA  Testis    4.6   NA  Male Accessory Gland    6.9   9.825  Carcass    no informative data modENCODE Temporal Expression Data (Graveley et al., 2011) FlyAtlas Anatomical Expression Data (Chintapalli et al., 2007)
Expression Clusters
External Data & Images
Linkouts	FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051824 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31824-RA
Alleles & Phenotypes
Summary of Allele Phenotypes
Phenotype manifest in Allele
Classical Alleles ( 1 )
For All Classical Alleles Show
Allele of CR31824 Class Mutagen Stocks Known lesion CR31824MB03060 1 --
Alleles Carried on Transgenic Constructs ( 1 )
For All Alleles Carried on Transgenic Constructs Show
Allele of CR31824 Class Mutagen Stocks Known lesion CR31824GD8874 in vitro construct - RNAi in vitro construct - regulatory fusion 0 Yes
Aneuploid Aberrations
Disrupted in	Df(2L)Exel6037 (Ryder, 2004.4.26)
Transgenic Constructs & Insertions
Transgenic Constructs
	Type of construct Name Expression data
Insertions
	Type of insertions Name Expression data insertion of enhancer trap binary system Mi{ET1}CR31824MB03060 No
Gene Ontology: Function, Process & Cellular Component ( 2 unique terms )
Terms Based on Experimental Evidence ( 0 terms )
Terms Based on Predictions or Assertions ( 2 terms )
Molecular Function
CV term Evidence References
serine-type endopeptidase activity inferred from sequence or structural similarity with InterPro:IPR001254 (FlyBase Genome Annotators, 2004)
Biological Process
CV term Evidence References
proteolysis inferred from electronic annotation with InterPro:IPR001254 (FlyBase Curators et al., 2004-)
Cellular Component ( 0 terms)
Sequence Ontology: Class of Gene
	non_protein_coding_gene (FlyBase Genome Annotators, 2010) nuclear_gene   pseudogene_attribute (FlyBase Genome Annotators, 2010)
Interactions & Pathways
Summary of Physical Interactions
Protein-protein
Interacting group Assay References
Summary of Genetic Interactions
Interacts with	Please look at the allele data for full details of the genetic interactions CR31824 allele Gene References
External Data
Linkouts	DroID - A comprehensive database of gene and protein interactions. • FBgn0051824
Orthologs
Genome-wide drosophilid orthologs	Dana\GF14925 Dere\GG25177 Dgri\GH10385 Dper\GL15299 Dsec\GM19451 Dsim\GD24025 Dvir\GJ18040 Dwil\GK19369 Dyak\GE21177
Curated drosophilid orthologs
Linkouts
Stocks & Reagents
Stocks Listed in FlyBase ( 1 )
Bloomington	23509 w1118; Mi{ET1}CR31824MB03060
Genomic Clones ( 2 )
	BACR06K01 BACR12D02 Please Note FlyBase no longer curates genomic clone accessions so this list may not be complete
cDNA Clones ( 0 )
	Please Note This section lists cDNAs and ESTs that fall within the genomic extent of the gene model, which may include cDNAs and ESTs of genes within introns, or of overlapping genes. Please see GBrowse for alignment of the cDNAs and ESTs to the gene model.
cDNA Clones, Fully Sequenced
BDGP DGC clones
Other clones
cDNA Clones, End Sequenced (ESTs)
BDGP DGC clones
Other clones
RNAi & Array Information
Linkouts	DRSC - Results from RNAi screens. • FBgn0051824 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 318963
Other Information
Discoverer
Etymology
Identification
Relationship to Other Genes
Source for database identity of
Source for database merge of
Additional comments	Release 1 annotation CG18629 corresponds to part of release 3.2 annotation CG31824. (FlyBase, 1996-)
Other Comments
	Annotation CG31824 renamed CR31824 in release 5.28 of the genome annotation. (FlyBase Genome Annotators, 2010) New annotation (CG31824) in release 3 of the genome annotation. (FlyBase Genome Annotators, 2002-2003)
External Crossreferences & Linkouts
Sequence Crossreferences
	DDBJ / EMBL / GenBank • AAN10917 Entrez Gene - A searchable database of RefSeq genes. • 318963 UniProtKB/TrEMBL • Q8IP34
Other Crossreferences
	InterPro domains - A database of protein families, domains, and functional sites • Peptidase S1/S6, chymotrypsin/Hap (IPR001254) Peptidase cysteine/serine, trypsin-like (IPR009003)
Linkouts
	DroID - A comprehensive database of gene and protein interactions. • FBgn0051824 DRSC - Results from RNAi screens. • FBgn0051824 FLIGHT - Cell culture data for RNAi and other high-throughput technologies • FBgn0051824 FlyAtlas - Adult expression by tissue, using Affymetrix Dros2 array • CG31824-RA FlyMine - Integrated genomics database for Drosophila, Anopheles, and C.elegans • FBgn0051824 GenomeRNAi - GenomeRNAi – A database for cell-based and in vivo RNAi phenotypes and reagents • 318963 modMine - Data generated by the modENCODE project. • FBgn0051824
Synonyms & Secondary IDs ( 3 )
Reported As
Symbol Synonym	CG18629   CG31824 (Obbard et al., 2009, ) CR31824 (FlyBase Genome Annotators, 2010)
Name Synonym
Secondary FlyBase IDs
	FBgn0032574
References ( 9 )
Research paper	Obbard et al., 2009, PLoS Genet. 5(10): e1000698 Quantifying adaptive evolution in the Drosophila immune system. [FBrf0208979]
Supplementary material	Dietzl et al., 2007, Nature 448(7150): Supplementary Table 1. [FBrf0202579]
Personal communication to FlyBase	Bellen, 2007.4.5, batch731.xml batch731.xml [FBrf0191801] FlyBase Curators et al., 2004-, Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. Gene Ontology annotation in FlyBase through association of InterPro records with GO terms. [FBrf0174215] Ryder, 2004.4.26, Exelixis CG deletion data. Exelixis CG deletion data. [FBrf0184335]
FlyBase analysis	FlyBase Genome Annotators, 2010, Changes affecting gene model number or type in release 5.28 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 5.28 of the annotated D.melanogaster genome. [FBrf0210498] FlyBase Genome Annotators, 2004, Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. Changes affecting gene model number or type in release 3.2 of the annotated D.melanogaster genome. [FBrf0166453] FlyBase Genome Annotators, 2002-2003, Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. Changes affecting gene model number or type in releases 3.0 and 3.1 of the annotated D.melanogaster genome. [FBrf0148886] FlyBase, 1996-, FlyBase inference based on genome sequence analysis. FlyBase inference based on genome sequence analysis. [FBrf0104946]